Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35132 * 125.61877 * 2 1 4 4 C 1.40367 * 107.11389 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.64330 * 180.02562 * 4 3 2 6 6 C 1.36543 * 106.71117 * 0.02562 * 4 3 2 7 7 C 1.46659 * 125.99049 * 179.97438 * 6 4 3 8 8 O 1.21695 * 119.99844 * 359.97438 * 7 6 4 9 9 N 1.34770 * 119.99947 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99875 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47295 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47289 * 294.99658 * 11 10 9 13 13 C 1.53005 * 109.47452 * 174.99734 * 11 10 9 14 14 N 1.46506 * 109.47289 * 54.99786 * 11 10 9 15 15 C 1.34774 * 120.00251 * 205.00099 * 14 11 10 16 16 O 1.21282 * 119.99905 * 0.02562 * 15 14 11 17 17 C 1.50696 * 119.99967 * 180.02562 * 15 14 11 18 18 S 1.81007 * 109.47019 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99724 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00304 * 359.97438 * 19 18 17 21 21 C 1.38803 * 119.99673 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99962 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99808 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47419 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.47049 * 119.99946 * 23 21 19 26 26 H 1.48498 * 109.47265 * 239.99896 * 23 21 19 27 27 O 1.33937 * 125.61256 * 180.33300 * 2 1 3 28 28 H 1.08997 * 109.47550 * 89.99508 * 1 2 3 29 29 H 1.09004 * 109.47141 * 209.99953 * 1 2 3 30 30 H 1.09005 * 109.47020 * 329.99340 * 1 2 3 31 31 H 1.07996 * 126.44086 * 0.04115 * 3 2 1 32 32 H 1.08996 * 109.47224 * 269.97671 * 5 4 3 33 33 H 1.08999 * 109.47386 * 29.98441 * 5 4 3 34 34 H 1.09001 * 109.46822 * 149.97516 * 5 4 3 35 35 H 0.96999 * 120.00413 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.47485 * 59.99811 * 10 9 7 37 37 H 1.09008 * 109.47071 * 299.99783 * 10 9 7 38 38 H 1.09001 * 109.46812 * 300.00216 * 13 11 10 39 39 H 1.09002 * 109.46935 * 59.99874 * 13 11 10 40 40 H 1.08992 * 109.47061 * 179.97438 * 13 11 10 41 41 H 0.97006 * 119.99584 * 25.00028 * 14 11 10 42 42 H 1.09007 * 109.47090 * 299.99748 * 17 15 14 43 43 H 1.08990 * 109.47220 * 59.99884 * 17 15 14 44 44 H 0.97005 * 120.00123 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6530 -0.0006 5 6 4.8617 1.5142 -0.0003 6 6 3.5823 -0.7118 -0.0015 7 6 4.7414 -1.6103 -0.0029 8 8 5.8680 -1.1502 -0.0038 9 7 4.5588 -2.9456 -0.0043 10 6 5.7166 -3.8432 -0.0051 11 6 5.2360 -5.2957 -0.0059 12 1 4.7098 -5.5048 0.9255 13 6 6.4400 -6.2313 -0.1326 14 7 4.3301 -5.5097 -1.1373 15 6 3.4086 -6.4919 -1.0864 16 8 3.3290 -7.1984 -0.1037 17 6 2.4773 -6.7124 -2.2503 18 16 1.3656 -8.0921 -1.8806 19 6 0.4165 -8.1264 -3.3647 20 1 0.6198 -7.4160 -4.1523 21 6 -0.5925 -9.0666 -3.5216 22 7 -0.8400 -9.9328 -2.5619 23 14 -1.5992 -9.1026 -5.0947 24 1 -1.1260 -8.0330 -6.0098 25 1 -1.4402 -10.4237 -5.7541 26 1 -3.0314 -8.8801 -4.7711 27 8 2.2869 -1.0889 -0.0063 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 1.9613 2.1260 0.0006 32 1 5.1599 1.7222 -1.0278 33 1 4.6514 2.4519 0.5140 34 1 5.6684 0.9912 0.5134 35 1 3.6609 -3.3124 -0.0039 36 1 6.3186 -3.6606 0.8851 37 1 6.3187 -3.6588 -0.8950 38 1 6.9662 -6.0222 -1.0640 39 1 7.1139 -6.0721 0.7092 40 1 6.0975 -7.2661 -0.1327 41 1 4.3936 -4.9444 -1.9230 42 1 1.8908 -5.8098 -2.4224 43 1 3.0591 -6.9432 -3.1426 44 1 -1.5449 -10.5901 -2.6716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285711570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -98.487012 kcal Electronic energy + Delta-G solvation = -26476.096363 eV Core-core repulsion = 22519.950069 eV Total energy + Delta-G solvation = -3956.146294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.77155 -41.09400 -40.35069 -37.55559 -35.40902 -34.69874 -34.58240 -33.41198 -32.66099 -30.08627 -28.97050 -28.84431 -27.66097 -26.67710 -23.08882 -22.71166 -22.29086 -21.64687 -20.70534 -19.89402 -19.21376 -17.99799 -17.67012 -17.55831 -17.02572 -16.88129 -16.39049 -16.28795 -16.15992 -15.71310 -15.31684 -14.80116 -14.66693 -14.55561 -14.15691 -14.09712 -14.06663 -13.90999 -13.76808 -13.63517 -13.59164 -13.28763 -13.26815 -13.15895 -12.97901 -12.91642 -12.59821 -12.58041 -12.08887 -11.70791 -11.31087 -11.16097 -10.96826 -10.67778 -10.35426 -10.27297 -10.21886 -9.44545 -8.66148 -8.35164 -6.12552 -0.05272 1.26381 1.29248 1.40923 1.46360 1.56106 1.58023 1.60448 2.01858 2.05634 2.25156 2.29021 2.99213 3.31359 3.49056 3.56613 3.76635 3.81009 3.95849 4.02379 4.21738 4.31269 4.43386 4.46731 4.50422 4.54235 4.55983 4.63124 4.68373 4.72933 4.74318 4.76593 4.96131 4.98056 5.09678 5.15446 5.24228 5.30760 5.42024 5.44326 5.49638 5.83122 6.19792 6.29366 6.44166 6.89782 7.06633 7.20963 8.74156 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.002689 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.825473 B =10410.410864 C =12536.383807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.026 3.974 3 C -0.231 4.231 4 C -0.087 4.087 5 C -0.092 4.092 6 C -0.126 4.126 7 C 0.606 3.394 8 O -0.544 6.544 9 N -0.715 5.715 10 C 0.121 3.879 11 C 0.136 3.864 12 H 0.079 0.921 13 C -0.156 4.156 14 N -0.712 5.712 15 C 0.539 3.461 16 O -0.558 6.558 17 C -0.132 4.132 18 S -0.147 6.147 19 C -0.545 4.545 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.273 1.273 27 O -0.177 6.177 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.183 0.817 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.043 0.957 41 H 0.414 0.586 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.792 24.635 3.536 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.027 4.027 3 C -0.250 4.250 4 C -0.090 4.090 5 C -0.148 4.148 6 C -0.177 4.177 7 C 0.394 3.606 8 O -0.425 6.425 9 N -0.366 5.366 10 C -0.002 4.002 11 C 0.031 3.969 12 H 0.098 0.902 13 C -0.215 4.215 14 N -0.367 5.367 15 C 0.325 3.675 16 O -0.436 6.436 17 C -0.283 4.283 18 S 0.080 5.920 19 C -0.693 4.693 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.199 1.199 27 O -0.074 6.074 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.200 0.800 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.250 0.750 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.321 23.315 5.238 26.030 hybrid contribution -0.999 0.373 -2.087 2.343 sum 9.322 23.688 3.151 25.651 Atomic orbital electron populations 1.20663 0.82078 1.05816 1.05247 1.23600 0.95717 0.83639 0.99719 1.21815 0.90908 1.01090 1.11151 1.21012 0.97719 0.92063 0.98185 1.20438 0.92720 0.98395 1.03254 1.21785 0.82233 0.94630 1.19045 1.16558 0.85986 0.81689 0.76414 1.90822 1.22850 1.76404 1.52411 1.45901 1.11402 1.05127 1.74169 1.21794 0.87719 0.85821 1.04881 1.21225 0.91440 0.94020 0.90219 0.90238 1.22070 0.96760 0.98512 1.04157 1.45894 1.34871 1.34792 1.21169 1.19983 0.80341 0.79826 0.87353 1.90704 1.71232 1.47009 1.34606 1.23385 1.00473 1.04095 1.00327 1.85550 1.39653 1.40010 1.26776 1.23224 1.21329 1.21414 1.03311 0.90058 1.26107 0.97754 0.93973 1.01292 1.70183 1.31537 1.18458 1.34557 0.84925 0.77552 0.78584 0.77007 1.18101 1.20019 1.19870 1.84020 1.15882 1.35932 1.71533 0.88258 0.90095 0.86367 0.79990 0.90282 0.89290 0.91121 0.75503 0.88507 0.89094 0.90526 0.89193 0.93828 0.74971 0.87367 0.87428 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.41 71.23 0.74 -0.08 16 2 C 0.03 0.45 7.31 24.97 0.18 0.63 16 3 C -0.23 -3.75 10.73 22.07 0.24 -3.51 16 4 C -0.09 -1.78 6.20 -19.74 -0.12 -1.90 16 5 C -0.09 -1.55 9.81 71.24 0.70 -0.85 16 6 C -0.13 -2.95 7.13 24.07 0.17 -2.78 16 7 C 0.61 14.37 7.79 86.44 0.67 15.04 16 8 O -0.54 -14.76 14.74 -4.33 -0.06 -14.82 16 9 N -0.72 -14.21 5.38 -467.10 -2.51 -16.72 16 10 C 0.12 2.00 5.23 86.38 0.45 2.45 16 11 C 0.14 2.70 2.73 44.99 0.12 2.82 16 12 H 0.08 1.93 7.58 -2.39 -0.02 1.91 16 13 C -0.16 -2.84 9.48 71.98 0.68 -2.16 16 14 N -0.71 -16.41 4.52 -442.52 -2.00 -18.41 16 15 C 0.54 18.64 7.81 87.66 0.68 19.33 16 16 O -0.56 -24.38 15.52 -3.04 -0.05 -24.43 16 17 C -0.13 -5.03 6.16 71.23 0.44 -4.59 16 18 S -0.15 -7.99 20.57 -56.49 -1.16 -9.16 16 19 C -0.54 -30.69 9.50 67.96 0.65 -30.04 16 20 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 21 C 0.01 0.76 5.49 84.86 0.47 1.23 16 22 N -0.91 -55.38 13.22 21.65 0.29 -55.10 16 23 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 27 O -0.18 -4.01 10.40 -5.17 -0.05 -4.06 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.44 6.45 -2.39 -0.02 1.43 16 35 H 0.41 8.35 7.89 -92.71 -0.73 7.61 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.34 8.14 -2.38 -0.02 1.33 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.41 7.35 8.60 -92.70 -0.80 6.56 16 42 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 43 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 44 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -79.18 393.42 2.06 -77.13 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -0.49 Total: 24.83 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 6.08 Total: -4.42 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -4.23 Total: -90.22 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.16 Total: -43.31 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.16 kcal Total: -79.18 2.06 -77.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285711570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.360 kcal (2) G-P(sol) polarization free energy of solvation -79.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds