Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47199 * 2 1 4 4 O 1.33655 * 125.80192 * 270.34909 * 3 2 1 5 5 C 1.34213 * 110.91275 * 180.14449 * 4 3 2 6 6 C 1.34178 * 109.12071 * 359.54836 * 5 4 3 7 7 C 1.36414 * 125.80485 * 89.99521 * 3 2 1 8 8 C 1.47377 * 127.19315 * 0.03784 * 7 3 2 9 9 O 1.21617 * 120.00022 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00392 * 179.97438 * 8 7 3 11 11 C 1.46504 * 119.99928 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46848 * 180.02562 * 11 10 8 13 13 N 1.46495 * 109.47059 * 180.02562 * 12 11 10 14 14 C 1.46500 * 120.00043 * 269.99943 * 13 12 11 15 15 C 1.34783 * 119.99835 * 89.99568 * 13 12 11 16 16 O 1.21277 * 120.00145 * 0.02562 * 15 13 12 17 17 C 1.50700 * 119.99557 * 179.97438 * 15 13 12 18 18 S 1.81006 * 109.46607 * 180.02562 * 17 15 13 19 19 C 1.76204 * 99.99759 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99903 * 359.97438 * 19 18 17 21 21 C 1.38791 * 119.99908 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00556 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00251 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46603 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47065 * 119.99929 * 23 21 19 26 26 H 1.48490 * 109.47528 * 240.00287 * 23 21 19 27 27 H 1.08991 * 109.47332 * 300.00423 * 1 2 3 28 28 H 1.09005 * 109.46497 * 60.00672 * 1 2 3 29 29 H 1.08996 * 109.46844 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47052 * 239.99496 * 2 1 3 31 31 H 1.09000 * 109.46447 * 119.99833 * 2 1 3 32 32 H 1.08002 * 125.44315 * 179.81711 * 5 4 3 33 33 H 1.08004 * 127.02354 * 180.30025 * 6 5 4 34 34 H 0.96994 * 119.99598 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47042 * 299.99431 * 11 10 8 36 36 H 1.08999 * 109.47079 * 59.99891 * 11 10 8 37 37 H 1.09005 * 109.46852 * 300.00022 * 12 11 10 38 38 H 1.08997 * 109.46874 * 59.99957 * 12 11 10 39 39 H 1.09000 * 109.46944 * 90.00151 * 14 13 12 40 40 H 1.09004 * 109.46894 * 209.99806 * 14 13 12 41 41 H 1.08998 * 109.46823 * 330.00049 * 14 13 12 42 42 H 1.08994 * 109.47840 * 300.00240 * 17 15 13 43 43 H 1.09001 * 109.46845 * 60.01206 * 17 15 13 44 44 H 0.96993 * 120.00397 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2868 2.1601 -1.0840 5 6 2.7241 3.3812 -0.7391 6 6 2.7575 3.4745 0.5990 7 6 2.2983 2.1732 1.1063 8 6 2.1553 1.7667 2.5157 9 8 1.7605 0.6494 2.7892 10 7 2.4620 2.6331 3.5015 11 6 2.3192 2.2291 4.9025 12 6 2.7291 3.3891 5.8120 13 7 2.5870 2.9850 7.2129 14 6 1.3195 3.2052 7.9139 15 6 3.6222 2.4104 7.8569 16 8 4.6716 2.2284 7.2768 17 6 3.4761 1.9952 9.2982 18 16 5.0270 1.2611 9.8747 19 6 4.5849 0.8780 11.5368 20 1 3.5944 1.1103 11.8993 21 6 5.5098 0.2787 12.3803 22 7 6.7175 -0.0031 11.9389 23 14 5.0415 -0.1269 14.1426 24 1 3.6370 0.2878 14.3894 25 1 5.1717 -1.5893 14.3654 26 1 5.9429 0.5979 15.0738 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0006 4.1652 -1.4286 33 1 3.0593 4.3307 1.1839 34 1 2.7765 3.5243 3.2833 35 1 1.2809 1.9626 5.0998 36 1 2.9589 1.3688 5.0995 37 1 3.7674 3.6561 5.6148 38 1 2.0891 4.2490 5.6148 39 1 0.6780 2.3332 7.7872 40 1 1.5137 3.3624 8.9749 41 1 0.8241 4.0840 7.5011 42 1 3.2401 2.8686 9.9059 43 1 2.6729 1.2636 9.3859 44 1 7.3640 -0.4216 12.5286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296052979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = -88.142497 kcal Electronic energy + Delta-G solvation = -26010.167238 eV Core-core repulsion = 22054.469516 eV Total energy + Delta-G solvation = -3955.697722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.57767 -41.03888 -40.37920 -37.20258 -35.77093 -34.96910 -34.59146 -33.79203 -31.88020 -30.01041 -29.41182 -27.70611 -27.45840 -25.43360 -24.21932 -23.56344 -21.95177 -21.14838 -20.45901 -19.55645 -18.89735 -18.11276 -17.50836 -17.31848 -17.06118 -16.89143 -16.75002 -16.44674 -16.28214 -15.79977 -15.57280 -15.30873 -14.86970 -14.67470 -14.46773 -14.33663 -14.23898 -13.92855 -13.59673 -13.57624 -13.29057 -13.24637 -13.15545 -13.06390 -12.91509 -12.63205 -12.51550 -12.37111 -12.00231 -11.70562 -11.20304 -11.16499 -10.93689 -10.86674 -10.27271 -10.23073 -9.81906 -9.56818 -8.68352 -8.35372 -6.13824 0.28627 1.12380 1.23092 1.41181 1.42705 1.51343 1.56716 1.75989 1.95948 2.26130 2.26698 2.43824 2.98864 3.25611 3.53941 3.67146 3.71327 3.81440 3.90439 4.01206 4.12751 4.20522 4.27121 4.28522 4.39767 4.42475 4.48406 4.58708 4.68555 4.72069 4.73610 4.87552 4.93181 4.96448 4.99260 5.06948 5.20877 5.28845 5.39643 5.41521 5.52790 6.02406 6.18397 6.20496 6.46460 7.05916 7.08842 7.14451 8.74150 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022078 B = 0.001825 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.916616 B =15339.043809 C =15561.406341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.056 4.056 3 C 0.070 3.930 4 O -0.181 6.181 5 C -0.030 4.030 6 C -0.196 4.196 7 C -0.268 4.268 8 C 0.583 3.417 9 O -0.577 6.577 10 N -0.706 5.706 11 C 0.115 3.885 12 C 0.113 3.887 13 N -0.609 5.609 14 C 0.069 3.931 15 C 0.530 3.470 16 O -0.561 6.561 17 C -0.124 4.124 18 S -0.157 6.157 19 C -0.543 4.543 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.273 1.273 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.250 0.750 33 H 0.184 0.816 34 H 0.416 0.584 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.131 0.869 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.539 11.953 -24.844 32.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 C 0.017 3.983 4 O -0.077 6.077 5 C -0.094 4.094 6 C -0.215 4.215 7 C -0.273 4.273 8 C 0.372 3.628 9 O -0.459 6.459 10 N -0.359 5.359 11 C -0.011 4.011 12 C -0.011 4.011 13 N -0.343 5.343 14 C -0.073 4.073 15 C 0.318 3.682 16 O -0.439 6.439 17 C -0.275 4.275 18 S 0.071 5.929 19 C -0.691 4.691 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.201 1.201 26 H -0.199 1.199 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.266 0.734 33 H 0.202 0.798 34 H 0.254 0.746 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.148 0.852 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.124 0.876 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.171 10.781 -25.732 31.758 hybrid contribution -0.636 0.130 1.870 1.979 sum -15.807 10.911 -23.863 30.632 Atomic orbital electron populations 1.21639 0.92548 1.03402 1.01811 1.20409 0.97656 0.86235 1.04992 1.23051 0.96991 0.94829 0.83439 1.83792 1.65159 1.24129 1.34605 1.24749 1.01891 0.85791 0.97011 1.23195 1.05783 0.97231 0.95280 1.21199 1.15483 0.97900 0.92675 1.17566 0.76398 0.83969 0.84828 1.90759 1.48590 1.21840 1.84699 1.45431 1.67810 1.17600 1.05018 1.21545 1.01335 0.97954 0.80216 1.21626 1.03957 0.96469 0.79004 1.47713 1.13781 1.60900 1.11875 1.22181 0.83287 1.03546 0.98243 1.20211 0.83372 0.76593 0.88039 1.90691 1.29459 1.55009 1.68777 1.23381 1.03602 1.04842 0.95649 1.85613 1.15637 1.78306 1.13376 1.23223 1.02411 1.46748 0.96739 0.89791 1.26156 0.94249 0.94501 1.04414 1.70194 1.05670 1.40762 1.38220 0.84888 0.79009 0.77981 0.75958 1.17868 1.20076 1.19854 0.93869 0.91454 0.90114 0.88072 0.89052 0.73380 0.79844 0.74629 0.90806 0.95001 0.90543 0.85160 0.91605 0.90344 0.87286 0.86926 0.87617 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.90 71.98 0.71 -1.44 16 2 C -0.06 -1.01 5.94 29.85 0.18 -0.84 16 3 C 0.07 1.39 6.63 25.26 0.17 1.56 16 4 O -0.18 -2.92 10.52 4.47 0.05 -2.88 16 5 C -0.03 -0.30 12.03 66.89 0.80 0.50 16 6 C -0.20 -2.47 10.60 23.65 0.25 -2.22 16 7 C -0.27 -5.52 6.31 -18.99 -0.12 -5.64 16 8 C 0.58 14.84 7.81 86.65 0.68 15.52 16 9 O -0.58 -18.98 14.84 -4.08 -0.06 -19.04 16 10 N -0.71 -14.18 5.55 -466.40 -2.59 -16.77 16 11 C 0.11 2.71 6.00 86.38 0.52 3.23 16 12 C 0.11 2.23 5.57 86.38 0.48 2.71 16 13 N -0.61 -15.14 2.87 -846.75 -2.43 -17.57 16 14 C 0.07 1.09 10.29 127.77 1.31 2.41 16 15 C 0.53 19.76 7.69 87.66 0.67 20.43 16 16 O -0.56 -26.19 15.44 -3.02 -0.05 -26.24 16 17 C -0.12 -4.94 4.71 71.24 0.34 -4.60 16 18 S -0.16 -8.80 20.57 -56.49 -1.16 -9.96 16 19 C -0.54 -31.18 9.50 67.95 0.65 -30.53 16 20 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 21 C 0.01 0.65 5.49 84.85 0.47 1.12 16 22 N -0.91 -56.53 13.22 21.65 0.29 -56.24 16 23 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 24 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 2.11 6.48 -2.39 -0.02 2.09 16 32 H 0.25 0.12 8.06 -2.91 -0.02 0.10 16 33 H 0.18 1.12 7.74 -2.91 -0.02 1.10 16 34 H 0.42 5.34 7.64 -92.71 -0.71 4.63 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.80 7.42 -2.38 -0.02 1.78 16 38 H 0.13 1.34 7.89 -2.39 -0.02 1.32 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.28 6.44 -2.39 -0.02 1.27 16 41 H 0.11 0.93 7.89 -2.39 -0.02 0.91 16 42 H 0.11 3.97 7.40 -2.40 -0.02 3.96 16 43 H 0.11 3.88 8.11 -2.39 -0.02 3.86 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -87.82 390.55 3.49 -84.33 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.31 Total: 16.33 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 7.10 Total: 2.20 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -4.74 Total: -90.58 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -0.06 Total: -48.16 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.16 Total: -9.96 kcal Total: -87.82 3.49 -84.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296052979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.808 kcal (2) G-P(sol) polarization free energy of solvation -87.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds