Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34177 * 125.43737 * 2 1 4 4 C 1.47026 * 105.95242 * 179.97438 * 3 2 1 5 5 C 1.47374 * 127.19118 * 180.02562 * 4 3 2 6 6 O 1.21619 * 119.99945 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00284 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00071 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47257 * 35.00264 * 8 7 5 10 10 C 1.52994 * 109.47552 * 274.99897 * 8 7 5 11 11 C 1.53003 * 109.46862 * 154.99929 * 8 7 5 12 12 H 1.09000 * 109.46911 * 60.00123 * 11 8 7 13 13 C 1.53004 * 109.47381 * 300.00334 * 11 8 7 14 14 N 1.46503 * 109.47361 * 180.02562 * 11 8 7 15 15 C 1.34774 * 120.00062 * 205.00221 * 14 11 8 16 16 O 1.21286 * 120.00106 * 359.97438 * 15 14 11 17 17 C 1.50699 * 119.99988 * 180.02562 * 15 14 11 18 18 S 1.80997 * 109.47307 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00186 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00193 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00329 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99547 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00147 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46949 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47044 * 119.99915 * 23 21 19 26 26 H 1.48500 * 109.46946 * 239.99913 * 23 21 19 27 27 C 1.36422 * 105.61531 * 0.02562 * 4 3 2 28 28 O 1.33648 * 108.39435 * 359.97438 * 27 4 3 29 29 H 1.09003 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47551 * 300.02279 * 1 2 3 31 31 H 1.09003 * 109.47068 * 60.02464 * 1 2 3 32 32 H 1.07999 * 127.02292 * 359.97438 * 3 2 1 33 33 H 0.97006 * 119.99417 * 359.97438 * 7 5 4 34 34 H 1.08994 * 109.47115 * 60.00267 * 10 8 7 35 35 H 1.09004 * 109.47260 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.47139 * 300.00439 * 10 8 7 37 37 H 1.08994 * 109.47047 * 59.99372 * 13 11 8 38 38 H 1.08997 * 109.47240 * 180.02562 * 13 11 8 39 39 H 1.09007 * 109.46746 * 300.00095 * 13 11 8 40 40 H 0.97001 * 119.99647 * 24.99974 * 14 11 8 41 41 H 1.09004 * 109.47068 * 299.99678 * 17 15 14 42 42 H 1.09004 * 109.47291 * 59.99504 * 17 15 14 43 43 H 0.97007 * 119.99706 * 180.02562 * 22 21 19 44 44 H 1.08001 * 125.79864 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4124 0.0014 6 8 4.8319 2.6266 0.0011 7 7 6.1068 0.8074 0.0014 8 6 7.3308 1.6122 0.0016 9 1 7.1719 2.5151 0.5912 10 6 7.6881 1.9977 -1.4353 11 6 8.4752 0.7999 0.6112 12 1 8.6341 -0.1030 0.0216 13 6 8.1180 0.4144 2.0482 14 7 9.6992 1.6049 0.6120 15 6 10.9036 1.0000 0.6121 16 8 10.9741 -0.2108 0.6120 17 6 12.1627 1.8281 0.6135 18 16 13.6045 0.7340 0.6140 19 6 14.8972 1.9312 0.6149 20 1 14.6579 2.9844 0.6145 21 6 16.2232 1.5209 0.6149 22 7 16.5149 0.2373 0.6138 23 14 17.5937 2.7902 0.6166 24 1 17.0055 4.1537 0.6170 25 1 18.4321 2.6119 1.8291 26 1 18.4329 2.6141 -0.5958 27 6 3.5790 -0.7583 0.0004 28 8 2.2852 -1.0935 0.0002 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5141 0.8897 31 1 -0.3633 0.5135 -0.8902 32 1 1.9595 2.1230 -0.0004 33 1 6.1630 -0.1610 0.0013 34 1 6.8729 2.5764 -1.8695 35 1 8.5991 2.5962 -1.4351 36 1 7.8470 1.0948 -2.0248 37 1 7.2072 -0.1843 2.0480 38 1 8.9334 -0.1639 2.4826 39 1 7.9590 1.3174 2.6377 40 1 9.6428 2.5733 0.6125 41 1 12.1844 2.4579 -0.2760 42 1 12.1834 2.4564 1.5041 43 1 17.4416 -0.0494 0.6142 44 1 4.4103 -1.4477 0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333824205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -68.917253 kcal Electronic energy + Delta-G solvation = -25996.561472 eV Core-core repulsion = 22041.697419 eV Total energy + Delta-G solvation = -3954.864053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.01326 -40.23577 -39.21045 -36.79676 -34.18020 -33.53696 -32.63144 -32.44151 -31.08692 -30.08809 -28.52281 -27.12209 -25.50148 -24.77664 -23.55589 -21.54800 -21.17697 -20.66965 -19.96540 -18.32306 -17.81756 -16.86550 -16.78025 -16.66780 -15.81700 -15.75826 -15.19158 -15.04002 -14.81745 -14.75304 -14.09848 -13.91089 -13.76070 -13.67605 -13.59476 -13.53361 -13.23472 -13.22072 -12.74372 -12.56297 -12.47403 -12.28621 -12.03262 -11.84352 -11.55818 -11.08007 -11.03417 -10.92561 -10.76268 -10.37729 -10.20673 -9.82174 -9.54887 -9.43770 -9.09345 -9.04752 -8.95850 -8.25536 -6.51772 -6.23405 -3.93880 0.90553 1.59827 2.34624 2.56497 3.01630 3.03411 3.10957 3.20851 3.28388 3.34072 3.72493 4.03904 4.18749 4.19487 4.28800 4.50813 4.72066 4.80106 4.92039 4.93934 5.01370 5.10443 5.12174 5.13514 5.24953 5.30395 5.31286 5.47606 5.50453 5.50811 5.63355 5.68007 5.85453 5.86918 5.89703 6.00284 6.10113 6.11437 6.13653 6.53793 6.56571 7.11270 7.58672 7.63521 7.87266 8.34100 8.55105 9.22403 10.84076 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.040081 B = 0.001684 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.420406 B =16626.016050 C =17004.673593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.014 4.014 3 C -0.163 4.163 4 C -0.231 4.231 5 C 0.591 3.409 6 O -0.533 6.533 7 N -0.718 5.718 8 C 0.138 3.862 9 H 0.095 0.905 10 C -0.164 4.164 11 C 0.138 3.862 12 H 0.093 0.907 13 C -0.164 4.164 14 N -0.730 5.730 15 C 0.536 3.464 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.020 3.980 28 O -0.172 6.172 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.159 0.841 33 H 0.399 0.601 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.400 0.600 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.243 0.107 -1.323 31.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.063 4.063 3 C -0.183 4.183 4 C -0.236 4.236 5 C 0.378 3.622 6 O -0.410 6.410 7 N -0.370 5.370 8 C 0.033 3.967 9 H 0.113 0.887 10 C -0.222 4.222 11 C 0.032 3.968 12 H 0.111 0.889 13 C -0.222 4.222 14 N -0.385 5.385 15 C 0.323 3.677 16 O -0.390 6.390 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.050 4.050 28 O -0.068 6.068 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.177 0.823 33 H 0.233 0.767 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.234 0.766 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -31.146 -1.455 -1.324 31.208 hybrid contribution 1.053 2.329 0.009 2.556 sum -30.093 0.874 -1.315 30.135 Atomic orbital electron populations 1.20354 0.84560 1.04274 1.03948 1.22358 0.94224 0.83549 1.06160 1.22475 0.89888 0.99810 1.06118 1.21480 0.94660 0.93264 1.14155 1.17223 0.82035 0.87103 0.75820 1.90800 1.87027 1.13593 1.49607 1.45763 1.05101 1.10181 1.75919 1.21160 0.82928 0.94870 0.97733 0.88689 1.22181 1.02272 1.02280 0.95481 1.21003 0.83633 0.95061 0.97124 0.88903 1.22198 1.01900 1.02006 0.96119 1.45937 1.04740 1.09978 1.77883 1.20302 0.83978 0.88683 0.74787 1.90699 1.86670 1.14161 1.47479 1.23537 0.97984 1.03889 1.05044 1.85378 0.92392 1.08846 1.96724 1.22914 0.92445 0.94147 1.58849 0.90848 1.24991 0.98123 0.95938 0.94509 1.70029 1.19377 1.13932 1.46962 0.86115 0.80828 0.80651 0.77905 1.19602 1.20562 1.20566 1.24436 0.84411 0.95362 1.00778 1.83744 1.16439 1.35593 1.70979 0.90330 0.89404 0.89412 0.82315 0.76653 0.91880 0.90950 0.92086 0.92027 0.91242 0.92329 0.76616 0.89135 0.89137 0.92235 0.77137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.40 36.01 0.37 0.12 16 2 C -0.01 -0.10 7.28 -35.74 -0.26 -0.36 16 3 C -0.16 -1.39 10.90 -37.45 -0.41 -1.80 16 4 C -0.23 -2.05 6.31 -103.27 -0.65 -2.70 16 5 C 0.59 6.20 7.78 -12.54 -0.10 6.10 16 6 O -0.53 -7.58 16.65 5.26 0.09 -7.49 16 7 N -0.72 -5.82 4.37 -54.90 -0.24 -6.06 16 8 C 0.14 1.28 2.21 -67.94 -0.15 1.13 16 9 H 0.10 0.97 7.58 -51.93 -0.39 0.58 16 10 C -0.16 -1.56 9.33 37.15 0.35 -1.21 16 11 C 0.14 1.45 2.21 -67.92 -0.15 1.30 16 12 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 13 C -0.16 -1.67 9.33 37.16 0.35 -1.33 16 14 N -0.73 -9.00 4.38 -53.80 -0.24 -9.24 16 15 C 0.54 9.42 7.81 -10.99 -0.09 9.33 16 16 O -0.52 -11.03 15.53 5.55 0.09 -10.95 16 17 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 23 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.02 0.13 11.61 30.08 0.35 0.48 16 28 O -0.17 -1.28 10.52 7.66 0.08 -1.20 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.40 2.20 7.36 -40.82 -0.30 1.90 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.68 7.45 -51.93 -0.39 0.29 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.50 7.44 -51.93 -0.39 0.11 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.40 3.94 8.39 -40.82 -0.34 3.60 16 41 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 42 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.21 0.50 7.47 -52.49 -0.39 0.11 16 LS Contribution 393.15 15.07 5.92 5.92 Total: -1.00 -37.32 393.15 -7.13 -44.46 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.37 Total: 1.87 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 0.03 Total: -4.55 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.26 Total: -40.53 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.25 Total: -19.63 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.32 -7.13 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333824205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.461 kcal (2) G-P(sol) polarization free energy of solvation -37.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds