Wall clock time and date at job start Sat Apr 11 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34177 * 125.43737 * 2 1 4 4 C 1.47026 * 105.95242 * 179.97438 * 3 2 1 5 5 C 1.47374 * 127.19118 * 180.02562 * 4 3 2 6 6 O 1.21619 * 119.99945 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00284 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00071 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47257 * 35.00264 * 8 7 5 10 10 C 1.52994 * 109.47552 * 274.99897 * 8 7 5 11 11 C 1.53003 * 109.46862 * 154.99929 * 8 7 5 12 12 H 1.09000 * 109.46911 * 60.00123 * 11 8 7 13 13 C 1.53004 * 109.47381 * 300.00334 * 11 8 7 14 14 N 1.46503 * 109.47361 * 180.02562 * 11 8 7 15 15 C 1.34774 * 120.00062 * 205.00221 * 14 11 8 16 16 O 1.21286 * 120.00106 * 359.97438 * 15 14 11 17 17 C 1.50699 * 119.99988 * 180.02562 * 15 14 11 18 18 S 1.80997 * 109.47307 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00186 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00193 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00329 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99547 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00147 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46949 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47044 * 119.99915 * 23 21 19 26 26 H 1.48500 * 109.46946 * 239.99913 * 23 21 19 27 27 C 1.36422 * 105.61531 * 0.02562 * 4 3 2 28 28 O 1.33648 * 108.39435 * 359.97438 * 27 4 3 29 29 H 1.09003 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47551 * 300.02279 * 1 2 3 31 31 H 1.09003 * 109.47068 * 60.02464 * 1 2 3 32 32 H 1.07999 * 127.02292 * 359.97438 * 3 2 1 33 33 H 0.97006 * 119.99417 * 359.97438 * 7 5 4 34 34 H 1.08994 * 109.47115 * 60.00267 * 10 8 7 35 35 H 1.09004 * 109.47260 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.47139 * 300.00439 * 10 8 7 37 37 H 1.08994 * 109.47047 * 59.99372 * 13 11 8 38 38 H 1.08997 * 109.47240 * 180.02562 * 13 11 8 39 39 H 1.09007 * 109.46746 * 300.00095 * 13 11 8 40 40 H 0.97001 * 119.99647 * 24.99974 * 14 11 8 41 41 H 1.09004 * 109.47068 * 299.99678 * 17 15 14 42 42 H 1.09004 * 109.47291 * 59.99504 * 17 15 14 43 43 H 0.97007 * 119.99706 * 180.02562 * 22 21 19 44 44 H 1.08001 * 125.79864 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4124 0.0014 6 8 4.8319 2.6266 0.0011 7 7 6.1068 0.8074 0.0014 8 6 7.3308 1.6122 0.0016 9 1 7.1719 2.5151 0.5912 10 6 7.6881 1.9977 -1.4353 11 6 8.4752 0.7999 0.6112 12 1 8.6341 -0.1030 0.0216 13 6 8.1180 0.4144 2.0482 14 7 9.6992 1.6049 0.6120 15 6 10.9036 1.0000 0.6121 16 8 10.9741 -0.2108 0.6120 17 6 12.1627 1.8281 0.6135 18 16 13.6045 0.7340 0.6140 19 6 14.8972 1.9312 0.6149 20 1 14.6579 2.9844 0.6145 21 6 16.2232 1.5209 0.6149 22 7 16.5149 0.2373 0.6138 23 14 17.5937 2.7902 0.6166 24 1 17.0055 4.1537 0.6170 25 1 18.4321 2.6119 1.8291 26 1 18.4329 2.6141 -0.5958 27 6 3.5790 -0.7583 0.0004 28 8 2.2852 -1.0935 0.0002 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5141 0.8897 31 1 -0.3633 0.5135 -0.8902 32 1 1.9595 2.1230 -0.0004 33 1 6.1630 -0.1610 0.0013 34 1 6.8729 2.5764 -1.8695 35 1 8.5991 2.5962 -1.4351 36 1 7.8470 1.0948 -2.0248 37 1 7.2072 -0.1843 2.0480 38 1 8.9334 -0.1639 2.4826 39 1 7.9590 1.3174 2.6377 40 1 9.6428 2.5733 0.6125 41 1 12.1844 2.4579 -0.2760 42 1 12.1834 2.4564 1.5041 43 1 17.4416 -0.0494 0.6142 44 1 4.4103 -1.4477 0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333824205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:39 Heat of formation + Delta-G solvation = -95.655847 kcal Electronic energy + Delta-G solvation = -25997.720944 eV Core-core repulsion = 22041.697419 eV Total energy + Delta-G solvation = -3956.023525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.56235 -41.21341 -40.37130 -37.84564 -35.21001 -34.57655 -34.10744 -33.24842 -32.15481 -30.89880 -29.87410 -27.65498 -27.54787 -25.51359 -24.41958 -22.19630 -22.07570 -21.75305 -20.81575 -19.87510 -18.78386 -18.01530 -17.63502 -17.32495 -16.89752 -16.87255 -16.70701 -16.43086 -15.97942 -15.78819 -15.43111 -14.98542 -14.78418 -14.48311 -14.41290 -14.37701 -14.01003 -13.79144 -13.77617 -13.75488 -13.35085 -13.22980 -13.14670 -12.91439 -12.74035 -12.69549 -12.59304 -12.51294 -11.81535 -11.68635 -11.26421 -11.15249 -10.93927 -10.85750 -10.38379 -10.26153 -10.06716 -9.54863 -8.64697 -8.34486 -6.11503 0.32263 1.01763 1.26038 1.41436 1.45586 1.56722 1.62002 1.82953 1.93633 2.27457 2.28329 2.48384 3.00030 3.32122 3.38833 3.59674 3.65185 3.86552 3.97742 4.02193 4.09060 4.31682 4.36925 4.43220 4.46063 4.52182 4.53988 4.69250 4.71390 4.73851 4.74388 4.85240 4.88989 4.96457 5.10757 5.19825 5.24573 5.29711 5.39391 5.43206 5.49288 6.00538 6.20703 6.42572 6.48540 7.07569 7.12494 7.23478 8.74844 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.040081 B = 0.001684 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.420406 B =16626.016050 C =17004.673593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.011 4.011 3 C -0.193 4.193 4 C -0.263 4.263 5 C 0.593 3.407 6 O -0.578 6.578 7 N -0.704 5.704 8 C 0.149 3.851 9 H 0.090 0.910 10 C -0.161 4.161 11 C 0.142 3.858 12 H 0.087 0.913 13 C -0.160 4.160 14 N -0.707 5.707 15 C 0.542 3.458 16 O -0.559 6.559 17 C -0.132 4.132 18 S -0.147 6.147 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.043 3.957 28 O -0.178 6.178 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.154 0.846 33 H 0.414 0.586 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.062 0.938 40 H 0.415 0.585 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.483 0.801 -1.333 32.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 C -0.212 4.212 4 C -0.268 4.268 5 C 0.382 3.618 6 O -0.459 6.459 7 N -0.356 5.356 8 C 0.044 3.956 9 H 0.108 0.892 10 C -0.219 4.219 11 C 0.037 3.963 12 H 0.105 0.895 13 C -0.218 4.218 14 N -0.361 5.361 15 C 0.328 3.672 16 O -0.436 6.436 17 C -0.283 4.283 18 S 0.081 5.919 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.027 4.027 28 O -0.073 6.073 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.171 0.829 33 H 0.251 0.749 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.252 0.748 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -32.431 -0.756 -1.334 32.467 hybrid contribution 1.275 2.097 0.009 2.454 sum -31.156 1.342 -1.325 31.214 Atomic orbital electron populations 1.20529 0.82232 1.05323 1.05083 1.22889 0.95516 0.82881 1.04615 1.22609 0.90448 1.00262 1.07913 1.21463 0.94094 0.94386 1.16851 1.17445 0.82817 0.86651 0.74883 1.90773 1.87634 1.15510 1.51964 1.45596 1.04134 1.10888 1.75020 1.20953 0.82716 0.94511 0.97421 0.89163 1.22152 1.02060 1.02289 0.95440 1.21069 0.82902 0.94679 0.97650 0.89510 1.22157 1.02067 1.02250 0.95323 1.45668 1.03808 1.10961 1.75690 1.19931 0.84733 0.87793 0.74792 1.90692 1.87257 1.15778 1.49898 1.23390 0.95487 1.02656 1.06816 1.85514 0.96564 1.12834 1.97036 1.23251 0.93060 0.94454 1.58695 0.90004 1.26086 1.00993 0.98145 0.93777 1.70183 1.20103 1.16311 1.48114 0.84933 0.77057 0.78079 0.78060 1.18138 1.19970 1.19959 1.25108 0.84893 0.94972 0.97739 1.83784 1.16914 1.35818 1.70809 0.89273 0.88237 0.88248 0.82874 0.74891 0.92740 0.90656 0.91863 0.89550 0.93714 0.91844 0.74778 0.87182 0.87347 0.92011 0.73366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.40 71.24 0.74 0.36 16 2 C -0.01 -0.13 7.28 24.76 0.18 0.05 16 3 C -0.19 -3.24 10.90 23.65 0.26 -2.98 16 4 C -0.26 -4.42 6.31 -18.99 -0.12 -4.54 16 5 C 0.59 11.99 7.78 86.65 0.67 12.66 16 6 O -0.58 -16.55 16.65 -4.09 -0.07 -16.62 16 7 N -0.70 -10.21 4.37 -445.86 -1.95 -12.16 16 8 C 0.15 2.52 2.21 44.99 0.10 2.62 16 9 H 0.09 1.71 7.58 -2.39 -0.02 1.69 16 10 C -0.16 -2.85 9.33 71.98 0.67 -2.18 16 11 C 0.14 2.77 2.21 44.99 0.10 2.87 16 12 H 0.09 1.90 7.58 -2.39 -0.02 1.88 16 13 C -0.16 -2.99 9.33 71.98 0.67 -2.32 16 14 N -0.71 -16.24 4.38 -442.51 -1.94 -18.17 16 15 C 0.54 18.59 7.81 87.66 0.68 19.27 16 16 O -0.56 -24.04 15.53 -3.05 -0.05 -24.08 16 17 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 18 S -0.15 -7.96 20.57 -56.49 -1.16 -9.13 16 19 C -0.55 -30.90 9.50 67.95 0.65 -30.25 16 20 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 21 C 0.01 0.84 5.49 84.86 0.47 1.30 16 22 N -0.91 -55.43 13.22 21.65 0.29 -55.14 16 23 Si 1.00 43.38 29.55 68.60 2.03 45.40 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C 0.04 0.45 11.61 67.40 0.78 1.23 16 28 O -0.18 -2.27 10.52 4.51 0.05 -2.23 16 29 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.41 3.49 7.36 -92.70 -0.68 2.80 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.28 7.45 -2.39 -0.02 1.26 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.18 7.44 -2.39 -0.02 1.16 16 38 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.42 7.20 8.39 -92.71 -0.78 6.42 16 41 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 42 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 43 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 44 H 0.25 0.25 7.47 -2.91 -0.02 0.23 16 Total: -1.00 -83.88 393.15 3.06 -80.82 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -0.42 Total: 17.81 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 6.29 Total: -6.50 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -3.60 Total: -85.47 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -0.07 Total: -42.93 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.13 kcal Total: -83.88 3.06 -80.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333824205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.839 kcal (2) G-P(sol) polarization free energy of solvation -83.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds