Wall clock time and date at job start Sat Apr 11 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35131 * 125.61246 * 2 1 4 4 C 1.40365 * 107.11522 * 180.02562 * 3 2 1 5 5 C 1.36544 * 106.70458 * 359.97438 * 4 3 2 6 6 C 1.46660 * 125.98678 * 179.97438 * 5 4 3 7 7 O 1.21693 * 119.99926 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99938 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99945 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.46942 * 35.00138 * 9 8 6 11 11 C 1.52997 * 109.47074 * 275.00338 * 9 8 6 12 12 C 1.52994 * 109.46878 * 155.00181 * 9 8 6 13 13 N 1.46500 * 109.47559 * 305.00060 * 12 9 8 14 14 C 1.46500 * 120.00018 * 269.99985 * 13 12 9 15 15 C 1.34780 * 119.99915 * 90.00192 * 13 12 9 16 16 O 1.21284 * 119.99741 * 359.97438 * 15 13 12 17 17 C 1.50692 * 119.99933 * 180.02562 * 15 13 12 18 18 S 1.80996 * 109.47284 * 179.97438 * 17 15 13 19 19 C 1.76195 * 100.00428 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99677 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00339 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00425 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00220 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47157 * 89.99702 * 23 21 19 25 25 H 1.48491 * 109.47271 * 210.00001 * 23 21 19 26 26 H 1.48501 * 109.46655 * 330.00261 * 23 21 19 27 27 O 1.33926 * 125.62021 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46573 * 89.99929 * 1 2 3 29 29 H 1.08994 * 109.47028 * 209.99768 * 1 2 3 30 30 H 1.08998 * 109.46925 * 330.00403 * 1 2 3 31 31 H 1.08001 * 126.44503 * 0.02562 * 3 2 1 32 32 H 1.07995 * 126.65210 * 179.73986 * 4 3 2 33 33 H 0.97003 * 120.00039 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.47178 * 300.00142 * 11 9 8 35 35 H 1.09005 * 109.46987 * 60.00144 * 11 9 8 36 36 H 1.09004 * 109.47245 * 179.97438 * 11 9 8 37 37 H 1.08999 * 109.47262 * 65.00513 * 12 9 8 38 38 H 1.09005 * 109.47080 * 184.99643 * 12 9 8 39 39 H 1.09003 * 109.46646 * 89.99498 * 14 13 12 40 40 H 1.08995 * 109.46839 * 209.99796 * 14 13 12 41 41 H 1.08997 * 109.47050 * 330.00337 * 14 13 12 42 42 H 1.09003 * 109.47195 * 299.99837 * 17 15 13 43 43 H 1.09005 * 109.47488 * 59.99283 * 17 15 13 44 44 H 0.96996 * 120.00603 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6533 -0.0006 5 6 3.5823 -0.7115 -0.0004 6 6 4.7415 -1.6100 -0.0013 7 8 5.8681 -1.1498 -0.0020 8 7 4.5590 -2.9454 -0.0004 9 6 5.7170 -3.8429 -0.0008 10 1 6.5203 -3.3998 0.5878 11 6 6.1960 -4.0567 -1.4381 12 6 5.3196 -5.1882 0.6098 13 7 4.7495 -4.9708 1.9417 14 6 5.6201 -4.9708 3.1200 15 6 3.4242 -4.7707 2.0830 16 8 2.7036 -4.7702 1.1075 17 6 2.8379 -4.5464 3.4530 18 16 1.0490 -4.3099 3.3124 19 6 0.6367 -4.0770 5.0095 20 1 1.4105 -4.1082 5.7624 21 6 -0.6823 -3.8532 5.3790 22 7 -0.9904 -3.6797 6.6469 23 14 -2.0206 -3.7984 4.0768 24 1 -2.5694 -5.1632 3.8733 25 1 -3.1070 -2.8892 4.5216 26 1 -1.4489 -3.2994 2.8003 27 8 2.2870 -1.0887 -0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9612 2.1261 0.0004 32 1 4.5113 1.2704 -0.0047 33 1 3.6611 -3.3122 0.0005 34 1 5.3927 -4.4997 -2.0267 35 1 6.4791 -3.0981 -1.8731 36 1 7.0578 -4.7241 -1.4384 37 1 4.5795 -5.6721 -0.0276 38 1 6.2007 -5.8248 0.6912 39 1 5.9778 -3.9584 3.3075 40 1 5.0599 -5.3244 3.9855 41 1 6.4703 -5.6296 2.9435 42 1 3.0419 -5.4131 4.0818 43 1 3.2873 -3.6595 3.8999 44 1 -1.9122 -3.5237 6.9052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337029107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:44 Heat of formation + Delta-G solvation = -82.554995 kcal Electronic energy + Delta-G solvation = -28079.637717 eV Core-core repulsion = 24124.182287 eV Total energy + Delta-G solvation = -3955.455430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.72600 -41.39668 -40.32458 -37.46229 -35.90855 -34.67598 -34.31923 -33.16864 -32.30188 -30.99222 -28.30184 -28.16813 -27.87162 -26.52326 -24.13002 -22.66167 -22.13943 -21.26197 -20.79778 -19.72070 -19.36741 -18.11829 -17.67667 -17.52662 -17.16791 -17.02789 -16.87623 -16.22888 -15.88041 -15.71793 -15.26577 -14.94780 -14.82593 -14.58376 -14.30175 -14.07846 -13.97253 -13.87646 -13.81086 -13.64546 -13.62188 -13.38193 -13.33341 -13.05865 -12.97715 -12.82575 -12.77167 -12.59929 -12.18860 -11.86493 -11.46265 -11.17429 -11.06460 -11.00358 -10.54495 -10.35512 -9.76347 -9.48844 -8.99099 -8.51547 -6.22367 -0.03828 0.96399 1.31337 1.31524 1.41807 1.45662 1.53837 1.62179 1.99505 2.06139 2.22104 2.25146 2.67584 2.86724 3.54467 3.56500 3.71606 3.88084 3.92804 4.06639 4.10277 4.15761 4.30625 4.39276 4.46590 4.48069 4.57558 4.61484 4.66441 4.67267 4.69982 4.76647 4.85778 4.90261 4.96299 5.09631 5.19760 5.32291 5.44227 5.50645 5.69844 5.85887 6.10405 6.14695 6.35098 6.90864 6.93151 7.03527 8.61150 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009194 B = 0.004786 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.642633 B = 5849.115960 C = 8045.811748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.019 3.981 3 C -0.227 4.227 4 C -0.116 4.116 5 C -0.122 4.122 6 C 0.601 3.399 7 O -0.556 6.556 8 N -0.710 5.710 9 C 0.119 3.881 10 H 0.088 0.912 11 C -0.154 4.154 12 C 0.108 3.892 13 N -0.608 5.608 14 C 0.069 3.931 15 C 0.536 3.464 16 O -0.551 6.551 17 C -0.111 4.111 18 S -0.160 6.160 19 C -0.533 4.533 20 H 0.057 0.943 21 C 0.046 3.954 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.232 1.232 27 O -0.176 6.176 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.188 0.812 32 H 0.170 0.830 33 H 0.411 0.589 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.141 0.859 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.789 2.099 -15.631 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.034 4.034 3 C -0.245 4.245 4 C -0.137 4.137 5 C -0.174 4.174 6 C 0.388 3.612 7 O -0.437 6.437 8 N -0.364 5.364 9 C 0.015 3.985 10 H 0.106 0.894 11 C -0.212 4.212 12 C -0.015 4.015 13 N -0.341 5.341 14 C -0.073 4.073 15 C 0.323 3.677 16 O -0.430 6.430 17 C -0.262 4.262 18 S 0.067 5.933 19 C -0.680 4.680 20 H 0.075 0.925 21 C -0.159 4.159 22 N -0.556 5.556 23 Si 0.736 3.264 24 H -0.188 1.188 25 H -0.182 1.182 26 H -0.155 1.155 27 O -0.072 6.072 28 H 0.127 0.873 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.205 0.795 32 H 0.187 0.813 33 H 0.250 0.750 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.159 0.841 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.115 0.885 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.340 2.064 -16.895 21.023 hybrid contribution -0.236 0.163 1.545 1.571 sum 12.104 2.227 -15.351 19.675 Atomic orbital electron populations 1.20655 0.82584 1.05360 1.05347 1.23661 0.95787 0.83855 1.00091 1.21928 0.91260 1.00956 1.10393 1.22204 0.99779 0.92350 0.99366 1.22169 0.82374 0.95427 1.17405 1.16696 0.85907 0.82295 0.76264 1.90791 1.22745 1.76876 1.53307 1.46427 1.12184 1.05071 1.72719 1.21736 0.87956 0.90094 0.98731 0.89417 1.22076 1.02671 1.02521 0.93981 1.22096 1.01411 0.95499 0.82484 1.47820 1.05881 1.71041 1.09384 1.22122 0.95290 1.03121 0.86742 1.19948 0.82645 0.75361 0.89709 1.90597 1.60155 1.51489 1.40744 1.23285 0.98428 1.05985 0.98465 1.84537 1.03647 1.94541 1.10587 1.22473 0.97321 1.56550 0.91671 0.92499 1.25579 1.00144 0.92803 0.97364 1.70023 1.20615 1.47669 1.17313 0.85870 0.79658 0.79892 0.80995 1.18779 1.18249 1.15519 1.84092 1.16133 1.36238 1.70765 0.87311 0.91369 0.86457 0.79451 0.81256 0.75007 0.91987 0.93459 0.87994 0.89807 0.84077 0.92542 0.90763 0.86920 0.87121 0.88461 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.73 10.41 71.24 0.74 -0.99 16 2 C 0.02 0.52 7.31 24.97 0.18 0.70 16 3 C -0.23 -5.51 10.77 22.07 0.24 -5.28 16 4 C -0.12 -3.28 10.62 22.39 0.24 -3.05 16 5 C -0.12 -4.05 7.13 24.07 0.17 -3.88 16 6 C 0.60 19.84 7.75 86.44 0.67 20.51 16 7 O -0.56 -19.65 16.53 -4.33 -0.07 -19.72 16 8 N -0.71 -20.77 4.48 -446.52 -2.00 -22.77 16 9 C 0.12 2.53 2.88 44.99 0.13 2.66 16 10 H 0.09 1.94 7.58 -2.39 -0.02 1.92 16 11 C -0.15 -2.60 9.48 71.98 0.68 -1.92 16 12 C 0.11 1.92 5.19 86.38 0.45 2.37 16 13 N -0.61 -14.14 2.77 -846.77 -2.35 -16.49 16 14 C 0.07 1.16 10.29 127.77 1.31 2.47 16 15 C 0.54 17.89 6.99 87.65 0.61 18.50 16 16 O -0.55 -21.43 13.18 -3.04 -0.04 -21.47 16 17 C -0.11 -4.23 4.71 71.23 0.34 -3.90 16 18 S -0.16 -7.91 18.55 -56.49 -1.05 -8.96 16 19 C -0.53 -30.86 10.04 67.95 0.68 -30.18 16 20 H 0.06 3.52 8.03 -2.91 -0.02 3.49 16 21 C 0.05 2.70 5.50 84.86 0.47 3.16 16 22 N -0.92 -55.57 13.97 21.65 0.30 -55.27 16 23 Si 0.91 43.82 27.74 68.60 1.90 45.73 16 24 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.23 -10.87 6.74 99.48 0.67 -10.20 16 27 O -0.18 -6.05 10.40 -4.94 -0.05 -6.10 16 28 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.19 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.17 4.18 8.06 -2.91 -0.02 4.15 16 33 H 0.41 13.51 5.58 -92.71 -0.52 12.99 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 0.98 8.14 -2.38 -0.02 0.97 16 36 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.08 1.71 7.42 -2.39 -0.02 1.70 16 38 H 0.14 1.25 7.89 -2.38 -0.02 1.23 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.33 6.44 -2.39 -0.02 1.31 16 41 H 0.11 1.02 7.89 -2.39 -0.02 1.01 16 42 H 0.11 3.89 7.40 -2.39 -0.02 3.88 16 43 H 0.10 3.67 8.11 -2.39 -0.02 3.65 16 44 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -78.32 385.39 4.02 -74.29 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.46 Total: 29.56 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 6.91 Total: 1.19 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -4.05 Total: -94.52 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -0.16 Total: -47.29 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.90 Total: 45.73 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.05 Total: -8.96 kcal Total: -78.32 4.02 -74.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337029107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.262 kcal (2) G-P(sol) polarization free energy of solvation -78.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds