Wall clock time and date at job start Sat Apr 11 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30845 * 125.83318 * 2 1 4 4 N 1.40072 * 108.34028 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.06554 * 179.97438 * 4 3 2 6 6 C 1.50710 * 109.46973 * 90.02085 * 5 4 3 7 7 H 1.07995 * 119.99750 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99515 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00636 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99648 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47431 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47066 * 119.99759 * 10 8 6 13 13 H 1.48499 * 109.47473 * 239.99965 * 10 8 6 14 14 C 1.35789 * 107.86968 * 359.73182 * 4 3 2 15 15 C 1.50704 * 126.20883 * 180.26052 * 14 4 3 16 16 C 1.35641 * 107.58142 * 0.42855 * 14 4 3 17 17 O 1.36182 * 126.06794 * 179.84042 * 16 14 4 18 18 C 1.34709 * 116.99947 * 269.71689 * 17 16 14 19 19 O 1.21538 * 120.00094 * 359.97438 * 18 17 16 20 20 C 1.47452 * 120.00126 * 179.97438 * 18 17 16 21 21 C 1.36643 * 125.92824 * 179.97438 * 20 18 17 22 22 N 1.36174 * 107.09313 * 179.97438 * 21 20 18 23 23 C 1.36678 * 132.28551 * 179.97438 * 22 21 20 24 24 C 1.34850 * 120.63866 * 180.02562 * 23 22 21 25 25 C 1.40577 * 120.34609 * 359.97438 * 24 23 22 26 26 C 1.35895 * 119.72779 * 0.02562 * 25 24 23 27 27 C 1.37283 * 107.35153 * 0.02562 * 22 21 20 28 28 N 1.32228 * 108.38987 * 359.97438 * 27 22 21 29 29 H 1.09010 * 109.46879 * 269.97768 * 1 2 3 30 30 H 1.09000 * 109.47311 * 29.97596 * 1 2 3 31 31 H 1.08999 * 109.47250 * 149.97924 * 1 2 3 32 32 H 1.08999 * 109.47254 * 210.02244 * 5 4 3 33 33 H 1.09004 * 109.46829 * 330.02348 * 5 4 3 34 34 H 0.96990 * 120.00336 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.47018 * 270.21880 * 15 14 4 36 36 H 1.08998 * 109.46841 * 30.22032 * 15 14 4 37 37 H 1.08997 * 109.46970 * 150.21891 * 15 14 4 38 38 H 1.08000 * 126.45519 * 359.95407 * 21 20 18 39 39 H 1.08000 * 119.68219 * 0.02562 * 23 22 21 40 40 H 1.07999 * 119.82495 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.13640 * 180.27932 * 25 24 23 42 42 H 1.07998 * 120.32103 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0608 0.0000 4 7 3.6089 0.6398 -0.0006 5 6 4.7874 1.5100 -0.0013 6 6 5.1926 1.8082 1.4193 7 1 4.6283 1.3915 2.2405 8 6 6.2829 2.6138 1.6705 9 7 6.9691 3.1224 0.6705 10 14 6.7846 2.9840 3.4314 11 1 5.8566 2.2972 4.3654 12 1 8.1688 2.4991 3.6640 13 1 6.7278 4.4494 3.6647 14 6 3.6178 -0.7181 0.0051 15 6 4.8396 -1.6003 0.0122 16 6 2.3275 -1.1363 -0.0005 17 8 1.9043 -2.4307 -0.0006 18 6 1.7144 -3.0119 -1.2010 19 8 1.9198 -2.3826 -2.2202 20 6 1.2572 -4.4117 -1.2783 21 6 1.0261 -5.1174 -2.4253 22 7 0.6202 -6.3631 -2.0539 23 6 0.2594 -7.4661 -2.7758 24 6 -0.1115 -8.6036 -2.1537 25 6 -0.1317 -8.6710 -0.7497 26 6 0.2242 -7.5829 -0.0175 27 6 0.6093 -6.3979 -0.6815 28 7 0.9953 -5.2161 -0.2312 29 1 -0.3633 -0.0004 1.0278 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 5.6080 1.0099 -0.5158 33 1 4.5506 2.4419 -0.5149 34 1 7.7359 3.6894 0.8473 35 1 5.1393 -1.8141 -1.0137 36 1 5.6526 -1.0909 0.5296 37 1 4.6106 -2.5340 0.5259 38 1 1.1431 -4.7555 -3.4361 39 1 0.2715 -7.4264 -3.8550 40 1 -0.3936 -9.4675 -2.7371 41 1 -0.4250 -9.5851 -0.2549 42 1 0.2125 -7.6242 1.0616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339227490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:49 Heat of formation + Delta-G solvation = 90.576234 kcal Electronic energy + Delta-G solvation = -28135.759299 eV Core-core repulsion = 24084.660202 eV Total energy + Delta-G solvation = -4051.099097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.23872 -41.07918 -39.56502 -37.71329 -36.35790 -34.15286 -33.95234 -32.53010 -31.10953 -30.60255 -29.28119 -29.01711 -26.79116 -25.93806 -25.13013 -23.52544 -23.02756 -22.63108 -21.07686 -19.42980 -19.14609 -18.43757 -17.39227 -17.29803 -16.86610 -16.60344 -16.47132 -15.56958 -15.46969 -15.05420 -14.92313 -14.53015 -14.41754 -14.23504 -13.38255 -13.24455 -12.90156 -12.87522 -12.70540 -12.49215 -12.25387 -12.25014 -12.00585 -11.83338 -11.67582 -11.53441 -11.52347 -11.00327 -10.92659 -10.79980 -10.71271 -10.52567 -10.28761 -9.73871 -9.67085 -9.32782 -8.66089 -8.34960 -8.29247 -7.66618 -6.27479 -4.35320 0.18097 0.77170 1.67771 1.96072 2.41451 2.78609 2.91479 3.20862 3.28511 3.28863 3.30486 3.37824 3.53923 3.74186 4.12399 4.21454 4.29366 4.45004 4.59981 4.83832 4.98589 5.04038 5.08271 5.22495 5.30497 5.39331 5.52654 5.61955 5.68437 5.83180 5.94682 5.97259 5.98703 6.00224 6.15892 6.19542 6.36386 6.52225 6.58506 6.65398 6.94417 7.00729 7.22242 7.37922 7.63604 7.84278 7.87077 8.22796 8.48079 8.71743 9.31391 10.80266 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021618 B = 0.002304 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.923578 B =12147.746893 C =12504.330427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.060 3.940 3 N -0.279 5.279 4 N -0.315 5.315 5 C 0.257 3.743 6 C -0.539 4.539 7 H 0.067 0.933 8 C 0.066 3.934 9 N -0.890 5.890 10 Si 0.907 3.093 11 H -0.270 1.270 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.107 3.893 15 C -0.094 4.094 16 C -0.104 4.104 17 O -0.230 6.230 18 C 0.531 3.469 19 O -0.487 6.487 20 C 0.031 3.969 21 C -0.010 4.010 22 N -0.365 5.365 23 C 0.054 3.946 24 C -0.136 4.136 25 C -0.104 4.104 26 C -0.070 4.070 27 C 0.222 3.778 28 N -0.440 5.440 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.268 0.732 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.200 0.800 39 H 0.167 0.833 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.864 -25.729 -7.050 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 N -0.103 5.103 4 N -0.096 5.096 5 C 0.140 3.860 6 C -0.577 4.577 7 H 0.085 0.915 8 C -0.138 4.138 9 N -0.528 5.528 10 Si 0.734 3.266 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.026 4.026 15 C -0.152 4.152 16 C -0.158 4.158 17 O -0.140 6.140 18 C 0.373 3.627 19 O -0.373 6.373 20 C -0.101 4.101 21 C -0.145 4.145 22 N -0.037 5.037 23 C -0.067 4.067 24 C -0.156 4.156 25 C -0.128 4.128 26 C -0.090 4.090 27 C -0.024 4.024 28 N -0.160 5.160 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.217 0.783 39 H 0.184 0.816 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.363 -23.699 -6.631 28.003 hybrid contribution 0.361 -0.724 -0.075 0.812 sum -13.002 -24.423 -6.706 28.469 Atomic orbital electron populations 1.20025 0.87245 1.02363 1.02550 1.22246 0.96840 0.89838 1.01628 1.77348 0.87365 1.21566 1.24010 1.49336 1.06007 1.03590 1.50677 1.19802 0.77552 0.89368 0.99246 1.21355 1.13355 1.31787 0.91202 0.91519 1.24935 0.95649 0.94920 0.98256 1.69927 1.19167 1.32700 1.31017 0.86278 0.78418 0.78314 0.83570 1.19472 1.20618 1.20596 1.21019 0.95768 0.86331 0.99475 1.20444 0.93999 0.97839 1.02888 1.17631 0.90727 0.81872 1.25576 1.84877 1.75914 1.23773 1.29388 1.20323 0.74380 0.84693 0.83270 1.90874 1.46865 1.63418 1.36099 1.19445 1.07844 0.93316 0.89487 1.22558 1.07809 0.83099 1.01073 1.42790 1.42060 1.09794 1.09086 1.21697 1.01323 0.85363 0.98284 1.20885 1.01969 0.97328 0.95430 1.21082 0.99358 0.98879 0.93492 1.20395 0.98844 0.88404 1.01310 1.21104 1.05439 0.96028 0.79809 1.71015 1.16914 0.99219 1.28852 0.90654 0.90988 0.91726 0.92685 0.92456 0.92232 0.90747 0.89170 0.90299 0.78301 0.81570 0.82913 0.83710 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.44 36.00 0.38 -0.67 16 2 C 0.06 1.30 7.22 -82.29 -0.59 0.70 16 3 N -0.28 -6.77 12.57 33.73 0.42 -6.34 16 4 N -0.32 -7.78 3.62 -58.02 -0.21 -7.99 16 5 C 0.26 6.74 5.84 -5.19 -0.03 6.71 16 6 C -0.54 -14.98 9.39 -34.44 -0.32 -15.31 16 7 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -25.19 13.29 55.43 0.74 -24.46 16 10 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.11 2.39 6.97 -81.77 -0.57 1.82 16 15 C -0.09 -1.73 9.89 36.01 0.36 -1.38 16 16 C -0.10 -2.25 5.35 -39.79 -0.21 -2.46 16 17 O -0.23 -4.51 10.14 -25.60 -0.26 -4.77 16 18 C 0.53 9.48 7.91 34.48 0.27 9.76 16 19 O -0.49 -9.55 16.65 -19.30 -0.32 -9.87 16 20 C 0.03 0.46 6.97 -83.47 -0.58 -0.12 16 21 C -0.01 -0.11 11.47 -16.20 -0.19 -0.30 16 22 N -0.37 -3.47 2.93 -62.36 -0.18 -3.65 16 23 C 0.05 0.29 10.93 -16.59 -0.18 0.11 16 24 C -0.14 -0.52 9.98 -39.90 -0.40 -0.92 16 25 C -0.10 -0.48 10.06 -39.54 -0.40 -0.88 16 26 C -0.07 -0.52 10.11 -39.30 -0.40 -0.92 16 27 C 0.22 2.51 7.79 -156.03 -1.22 1.29 16 28 N -0.44 -6.51 11.35 -9.37 -0.11 -6.62 16 29 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.42 7.71 -51.93 -0.40 1.02 16 33 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.09 1.72 7.78 -51.93 -0.40 1.31 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.17 0.36 8.06 -52.49 -0.42 -0.06 16 40 H 0.15 0.09 8.06 -52.49 -0.42 -0.33 16 41 H 0.15 0.24 8.06 -52.49 -0.42 -0.18 16 42 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -35.60 377.93 -8.43 -44.02 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.00 Total: -1.44 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -4.18 Total: -0.85 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.66 Total: -49.06 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.58 Total: -14.64 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.60 -8.43 -44.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339227490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.601 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds