Wall clock time and date at job start Sat Apr 11 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30845 * 125.83318 * 2 1 4 4 N 1.40072 * 108.34028 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.06554 * 179.97438 * 4 3 2 6 6 C 1.50710 * 109.46973 * 90.02085 * 5 4 3 7 7 H 1.07995 * 119.99750 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99515 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00636 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99648 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47431 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47066 * 119.99759 * 10 8 6 13 13 H 1.48499 * 109.47473 * 239.99965 * 10 8 6 14 14 C 1.35789 * 107.86968 * 359.73182 * 4 3 2 15 15 C 1.50704 * 126.20883 * 180.26052 * 14 4 3 16 16 C 1.35641 * 107.58142 * 0.42855 * 14 4 3 17 17 O 1.36182 * 126.06794 * 179.84042 * 16 14 4 18 18 C 1.34709 * 116.99947 * 269.71689 * 17 16 14 19 19 O 1.21538 * 120.00094 * 359.97438 * 18 17 16 20 20 C 1.47452 * 120.00126 * 179.97438 * 18 17 16 21 21 C 1.36643 * 125.92824 * 179.97438 * 20 18 17 22 22 N 1.36174 * 107.09313 * 179.97438 * 21 20 18 23 23 C 1.36678 * 132.28551 * 179.97438 * 22 21 20 24 24 C 1.34850 * 120.63866 * 180.02562 * 23 22 21 25 25 C 1.40577 * 120.34609 * 359.97438 * 24 23 22 26 26 C 1.35895 * 119.72779 * 0.02562 * 25 24 23 27 27 C 1.37283 * 107.35153 * 0.02562 * 22 21 20 28 28 N 1.32228 * 108.38987 * 359.97438 * 27 22 21 29 29 H 1.09010 * 109.46879 * 269.97768 * 1 2 3 30 30 H 1.09000 * 109.47311 * 29.97596 * 1 2 3 31 31 H 1.08999 * 109.47250 * 149.97924 * 1 2 3 32 32 H 1.08999 * 109.47254 * 210.02244 * 5 4 3 33 33 H 1.09004 * 109.46829 * 330.02348 * 5 4 3 34 34 H 0.96990 * 120.00336 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.47018 * 270.21880 * 15 14 4 36 36 H 1.08998 * 109.46841 * 30.22032 * 15 14 4 37 37 H 1.08997 * 109.46970 * 150.21891 * 15 14 4 38 38 H 1.08000 * 126.45519 * 359.95407 * 21 20 18 39 39 H 1.08000 * 119.68219 * 0.02562 * 23 22 21 40 40 H 1.07999 * 119.82495 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.13640 * 180.27932 * 25 24 23 42 42 H 1.07998 * 120.32103 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0608 0.0000 4 7 3.6089 0.6398 -0.0006 5 6 4.7874 1.5100 -0.0013 6 6 5.1926 1.8082 1.4193 7 1 4.6283 1.3915 2.2405 8 6 6.2829 2.6138 1.6705 9 7 6.9691 3.1224 0.6705 10 14 6.7846 2.9840 3.4314 11 1 5.8566 2.2972 4.3654 12 1 8.1688 2.4991 3.6640 13 1 6.7278 4.4494 3.6647 14 6 3.6178 -0.7181 0.0051 15 6 4.8396 -1.6003 0.0122 16 6 2.3275 -1.1363 -0.0005 17 8 1.9043 -2.4307 -0.0006 18 6 1.7144 -3.0119 -1.2010 19 8 1.9198 -2.3826 -2.2202 20 6 1.2572 -4.4117 -1.2783 21 6 1.0261 -5.1174 -2.4253 22 7 0.6202 -6.3631 -2.0539 23 6 0.2594 -7.4661 -2.7758 24 6 -0.1115 -8.6036 -2.1537 25 6 -0.1317 -8.6710 -0.7497 26 6 0.2242 -7.5829 -0.0175 27 6 0.6093 -6.3979 -0.6815 28 7 0.9953 -5.2161 -0.2312 29 1 -0.3633 -0.0004 1.0278 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 5.6080 1.0099 -0.5158 33 1 4.5506 2.4419 -0.5149 34 1 7.7359 3.6894 0.8473 35 1 5.1393 -1.8141 -1.0137 36 1 5.6526 -1.0909 0.5296 37 1 4.6106 -2.5340 0.5259 38 1 1.1431 -4.7555 -3.4361 39 1 0.2715 -7.4264 -3.8550 40 1 -0.3936 -9.4675 -2.7371 41 1 -0.4250 -9.5851 -0.2549 42 1 0.2125 -7.6242 1.0616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339227490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:49 Heat of formation + Delta-G solvation = 69.744331 kcal Electronic energy + Delta-G solvation = -28136.662638 eV Core-core repulsion = 24084.660202 eV Total energy + Delta-G solvation = -4052.002436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.98234 -42.71572 -41.08401 -38.40527 -37.78604 -35.91415 -34.78734 -34.39350 -32.57541 -31.57062 -30.72097 -29.97316 -28.29998 -27.79197 -26.29013 -24.72230 -24.02401 -23.67228 -22.34350 -20.95688 -20.84314 -19.38002 -18.91641 -18.58519 -18.10138 -17.67475 -17.42961 -17.08073 -16.50129 -16.32701 -16.17181 -15.85859 -15.51086 -15.22753 -14.91565 -14.77663 -14.53540 -14.27608 -14.18162 -13.71850 -13.44403 -13.36249 -13.26184 -13.23665 -12.89430 -12.86496 -12.73576 -12.68096 -12.51549 -12.31097 -12.12210 -12.10393 -11.74884 -11.42394 -11.35456 -10.77485 -10.09240 -10.06001 -9.42029 -8.98833 -8.38372 -6.55817 -0.44225 0.13971 0.67918 0.72659 1.07222 1.35652 1.37009 1.46349 1.49156 1.60225 2.01409 2.13478 2.31955 2.53061 2.92141 2.96774 3.40212 3.58113 3.66648 3.73818 3.92151 4.01313 4.09733 4.20315 4.21877 4.34603 4.51004 4.55758 4.62829 4.66470 4.71871 4.76420 4.78018 4.82290 4.96676 5.11269 5.12795 5.17361 5.25766 5.30270 5.48262 5.52743 5.65275 5.72836 5.91845 6.01109 6.47457 6.53244 6.71987 6.82068 7.15330 8.69345 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021618 B = 0.002304 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.923578 B =12147.746893 C =12504.330427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.060 3.940 3 N -0.317 5.317 4 N -0.339 5.339 5 C 0.274 3.726 6 C -0.556 4.556 7 H 0.051 0.949 8 C 0.023 3.977 9 N -0.917 5.917 10 Si 0.975 3.025 11 H -0.273 1.273 12 H -0.266 1.266 13 H -0.273 1.273 14 C 0.094 3.906 15 C -0.088 4.088 16 C -0.108 4.108 17 O -0.237 6.237 18 C 0.535 3.465 19 O -0.514 6.514 20 C -0.010 4.010 21 C 0.006 3.994 22 N -0.365 5.365 23 C 0.039 3.961 24 C -0.123 4.123 25 C -0.072 4.072 26 C -0.108 4.108 27 C 0.217 3.783 28 N -0.493 5.493 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.031 0.969 34 H 0.275 0.725 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.223 0.777 39 H 0.202 0.798 40 H 0.198 0.802 41 H 0.183 0.817 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.208 -29.620 -7.501 34.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 N -0.141 5.141 4 N -0.120 5.120 5 C 0.156 3.844 6 C -0.594 4.594 7 H 0.069 0.931 8 C -0.178 4.178 9 N -0.555 5.555 10 Si 0.798 3.202 11 H -0.198 1.198 12 H -0.190 1.190 13 H -0.198 1.198 14 C -0.038 4.038 15 C -0.146 4.146 16 C -0.162 4.162 17 O -0.147 6.147 18 C 0.380 3.620 19 O -0.401 6.401 20 C -0.140 4.140 21 C -0.131 4.131 22 N -0.036 5.036 23 C -0.080 4.080 24 C -0.142 4.142 25 C -0.096 4.096 26 C -0.128 4.128 27 C -0.030 4.030 28 N -0.215 5.215 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.239 0.761 39 H 0.219 0.781 40 H 0.215 0.785 41 H 0.200 0.800 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.718 -27.620 -7.096 32.091 hybrid contribution 0.607 0.132 -0.030 0.622 sum -14.111 -27.489 -7.126 31.710 Atomic orbital electron populations 1.20196 0.83954 1.03571 1.04170 1.23025 0.98883 0.89190 0.99502 1.77268 0.87535 1.23194 1.26113 1.49132 1.05808 1.04273 1.52829 1.19373 0.78175 0.88570 0.98291 1.21435 1.13919 1.32647 0.91409 0.93078 1.25762 0.95260 0.94273 1.02497 1.70006 1.19528 1.32887 1.33038 0.85257 0.78426 0.78276 0.78219 1.19809 1.19033 1.19794 1.21617 0.97468 0.85804 0.98947 1.20507 0.92358 0.97726 1.03969 1.17751 0.90630 0.82925 1.24858 1.84863 1.76136 1.22740 1.30970 1.20734 0.73438 0.85763 0.82059 1.90841 1.48457 1.64397 1.36424 1.19165 1.11355 0.92162 0.91303 1.22765 1.06222 0.83375 1.00785 1.42967 1.41634 1.10186 1.08827 1.22555 1.00995 0.84451 1.00041 1.21534 0.99428 0.97890 0.95385 1.21656 0.95143 0.98749 0.94055 1.20670 1.01662 0.88333 1.02106 1.21584 1.04522 0.95923 0.80964 1.70862 1.19742 1.00999 1.29874 0.88693 0.89612 0.90601 0.93027 0.95115 0.91582 0.89236 0.89959 0.88535 0.76067 0.78126 0.78498 0.79966 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.00 10.44 71.23 0.74 -1.26 16 2 C 0.06 2.67 7.22 43.17 0.31 2.98 16 3 N -0.32 -16.12 12.57 -47.20 -0.59 -16.71 16 4 N -0.34 -17.63 3.62 -337.49 -1.22 -18.85 16 5 C 0.27 15.16 5.84 85.64 0.50 15.66 16 6 C -0.56 -32.13 9.39 25.60 0.24 -31.89 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.02 1.31 5.46 84.65 0.46 1.77 16 9 N -0.92 -52.75 13.29 21.45 0.28 -52.46 16 10 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 C 0.09 4.36 6.97 41.35 0.29 4.65 16 15 C -0.09 -3.36 9.89 71.24 0.70 -2.66 16 16 C -0.11 -4.83 5.35 22.14 0.12 -4.72 16 17 O -0.24 -9.68 10.14 -2.84 -0.03 -9.71 16 18 C 0.54 19.88 7.91 70.25 0.56 20.44 16 19 O -0.51 -20.86 16.65 19.72 0.33 -20.54 16 20 C -0.01 -0.31 6.97 40.77 0.28 -0.02 16 21 C 0.01 0.12 11.47 83.65 0.96 1.08 16 22 N -0.37 -6.24 2.93 -351.20 -1.03 -7.27 16 23 C 0.04 0.26 10.93 83.16 0.91 1.17 16 24 C -0.12 -0.27 9.98 22.06 0.22 -0.04 16 25 C -0.07 -0.33 10.06 22.30 0.22 -0.11 16 26 C -0.11 -1.42 10.11 22.45 0.23 -1.19 16 27 C 0.22 4.75 7.79 134.20 1.05 5.80 16 28 N -0.49 -15.09 11.35 -183.54 -2.08 -17.17 16 29 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 30 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.05 2.83 7.71 -2.39 -0.02 2.81 16 33 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.28 14.67 8.31 -92.72 -0.77 13.90 16 35 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.08 3.26 7.78 -2.39 -0.02 3.24 16 37 H 0.10 3.29 8.14 -2.39 -0.02 3.28 16 38 H 0.22 3.46 8.06 -2.91 -0.02 3.43 16 39 H 0.20 -0.14 8.06 -2.91 -0.02 -0.16 16 40 H 0.20 -1.22 8.06 -2.91 -0.02 -1.25 16 41 H 0.18 -0.49 8.06 -2.91 -0.02 -0.52 16 42 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -83.02 377.93 6.53 -76.48 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.06 Total: 8.49 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 7.79 Total: 11.66 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -4.64 Total: -112.47 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: 0.30 Total: -30.24 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -83.02 6.53 -76.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339227490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.227 kcal (2) G-P(sol) polarization free energy of solvation -83.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds