Wall clock time and date at job start Sat Apr 11 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30851 * 125.82578 * 2 1 4 4 N 1.40084 * 108.33338 * 179.82020 * 3 2 1 5 5 C 1.46490 * 126.06724 * 180.27061 * 4 3 2 6 6 C 1.50703 * 109.47179 * 270.10998 * 5 4 3 7 7 H 1.08006 * 119.99540 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00557 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99705 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00237 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47383 * 59.99810 * 10 8 6 12 12 H 1.48504 * 109.47362 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47275 * 299.99747 * 10 8 6 14 14 C 1.35802 * 107.86467 * 0.36112 * 4 3 2 15 15 C 1.50703 * 126.20815 * 179.90778 * 14 4 3 16 16 C 1.35637 * 107.58209 * 359.64534 * 14 4 3 17 17 O 1.36189 * 126.06477 * 180.25078 * 16 14 4 18 18 C 1.34961 * 118.00248 * 89.99242 * 17 16 14 19 19 O 1.21740 * 120.00200 * 0.02562 * 18 17 16 20 20 C 1.41456 * 119.99868 * 180.02562 * 18 17 16 21 21 C 1.39293 * 125.88820 * 179.69726 * 20 18 17 22 22 C 1.38015 * 107.67257 * 179.83875 * 21 20 18 23 23 C 1.39559 * 107.59350 * 0.42200 * 22 21 20 24 24 C 1.40594 * 132.40326 * 179.80927 * 23 22 21 25 25 C 1.36303 * 119.16651 * 179.97438 * 24 23 22 26 26 C 1.39958 * 120.03325 * 359.95841 * 25 24 23 27 27 N 1.30657 * 120.98405 * 0.02562 * 26 25 24 28 28 N 1.37130 * 108.21497 * 359.73574 * 23 22 21 29 29 H 1.09009 * 109.46760 * 269.95503 * 1 2 3 30 30 H 1.08995 * 109.47192 * 29.95660 * 1 2 3 31 31 H 1.08993 * 109.46881 * 149.96403 * 1 2 3 32 32 H 1.08999 * 109.47367 * 30.10995 * 5 4 3 33 33 H 1.09001 * 109.47739 * 150.11210 * 5 4 3 34 34 H 0.97002 * 120.00009 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47152 * 269.71355 * 15 14 4 36 36 H 1.09001 * 109.46980 * 149.71455 * 15 14 4 37 37 H 1.09004 * 109.47113 * 29.71436 * 15 14 4 38 38 H 1.08002 * 126.15591 * 359.97370 * 21 20 18 39 39 H 1.08001 * 126.20557 * 180.15677 * 22 21 20 40 40 H 1.08003 * 120.42203 * 359.97438 * 24 23 22 41 41 H 1.07999 * 119.98850 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.50706 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0609 0.0000 4 7 3.6090 0.6399 0.0042 5 6 4.7874 1.5100 0.0112 6 6 5.1956 1.8144 -1.4073 7 1 4.6335 1.4006 -2.2315 8 6 6.2870 2.6202 -1.6528 9 7 6.9717 3.1236 -0.6492 10 14 6.7924 2.9980 -3.4110 11 1 5.6761 3.6831 -4.1106 12 1 7.9879 3.8789 -3.4040 13 1 7.1156 1.7316 -4.1162 14 6 3.6178 -0.7181 -0.0015 15 6 4.8396 -1.6004 -0.0017 16 6 2.3275 -1.1362 -0.0009 17 8 1.9042 -2.4307 -0.0007 18 6 1.7079 -3.0329 1.1910 19 8 1.9085 -2.4197 2.2234 20 6 1.2690 -4.3768 1.2405 21 6 1.0339 -5.1169 2.3968 22 6 0.6167 -6.3748 2.0116 23 6 0.6060 -6.4068 0.6164 24 6 0.2752 -7.4147 -0.3064 25 6 0.3618 -7.1485 -1.6403 26 6 0.7748 -5.8845 -2.0770 27 7 1.0827 -4.9451 -1.2227 28 7 1.0069 -5.1787 0.1564 29 1 -0.3633 -0.0008 1.0278 30 1 -0.3633 0.8903 -0.5131 31 1 -0.3633 -0.8896 -0.5144 32 1 4.5497 2.4396 0.5282 33 1 5.6070 1.0078 0.5252 34 1 7.7394 3.6908 -0.8219 35 1 5.1340 -1.8130 -1.0294 36 1 4.6131 -2.5347 0.5121 37 1 5.6552 -1.0916 0.5122 38 1 1.1542 -4.7684 3.4120 39 1 0.3511 -7.1885 2.6703 40 1 -0.0434 -8.3877 0.0374 41 1 0.1113 -7.9131 -2.3607 42 1 0.8399 -5.6826 -3.1360 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349956652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:58 Heat of formation + Delta-G solvation = 106.147225 kcal Electronic energy + Delta-G solvation = -28763.445656 eV Core-core repulsion = 24713.021768 eV Total energy + Delta-G solvation = -4050.423888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.27442 -40.98267 -39.50320 -37.62760 -36.22918 -33.96550 -33.69115 -32.53485 -30.84859 -30.77701 -29.44314 -29.01654 -26.57010 -25.92382 -25.18114 -23.87957 -22.79826 -22.01437 -20.72972 -19.68721 -19.13335 -18.53002 -17.60461 -16.98438 -16.67807 -16.22162 -16.19453 -15.92868 -15.36934 -14.84899 -14.50481 -14.32559 -14.00553 -13.67941 -13.32764 -13.23179 -13.11132 -12.91335 -12.69741 -12.61110 -12.46797 -12.36303 -11.99415 -11.90539 -11.66457 -11.51175 -11.14572 -11.04651 -10.89172 -10.83199 -10.75722 -10.52206 -10.28789 -9.77667 -9.64744 -9.25164 -8.65401 -8.29052 -8.13854 -7.62919 -6.27325 -4.35271 0.10905 0.59664 1.61140 1.94084 2.41407 2.81140 2.88201 3.21679 3.22824 3.26629 3.28879 3.38981 3.68189 3.94173 4.11315 4.23851 4.28555 4.51079 4.87521 4.98679 5.03633 5.08584 5.21437 5.28710 5.36679 5.40191 5.55432 5.59970 5.76477 5.80247 5.83996 5.95723 6.00490 6.13331 6.20566 6.26095 6.32389 6.40876 6.55263 6.70295 6.97631 7.03601 7.29766 7.32552 7.62874 7.84570 7.88068 8.27674 8.49179 8.70655 9.31000 10.80430 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.002814 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.393759 B = 9946.613763 C =10510.887799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.058 3.942 3 N -0.279 5.279 4 N -0.316 5.316 5 C 0.258 3.742 6 C -0.539 4.539 7 H 0.065 0.935 8 C 0.067 3.933 9 N -0.891 5.891 10 Si 0.908 3.092 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.103 3.897 15 C -0.083 4.083 16 C -0.096 4.096 17 O -0.242 6.242 18 C 0.517 3.483 19 O -0.491 6.491 20 C -0.012 4.012 21 C -0.072 4.072 22 C -0.176 4.176 23 C 0.012 3.988 24 C -0.021 4.021 25 C -0.190 4.190 26 C 0.124 3.876 27 N -0.238 5.238 28 N -0.223 5.223 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.269 0.731 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.169 0.831 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 -24.466 0.439 27.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 N -0.103 5.103 4 N -0.097 5.097 5 C 0.141 3.859 6 C -0.578 4.578 7 H 0.083 0.917 8 C -0.137 4.137 9 N -0.528 5.528 10 Si 0.735 3.265 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.199 1.199 14 C -0.030 4.030 15 C -0.141 4.141 16 C -0.150 4.150 17 O -0.152 6.152 18 C 0.363 3.637 19 O -0.378 6.378 20 C -0.127 4.127 21 C -0.096 4.096 22 C -0.202 4.202 23 C -0.101 4.101 24 C -0.048 4.048 25 C -0.213 4.213 26 C -0.068 4.068 27 N -0.047 5.047 28 N 0.013 4.987 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.186 0.814 39 H 0.177 0.823 40 H 0.174 0.826 41 H 0.169 0.831 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -12.700 -21.571 0.543 25.038 hybrid contribution 0.153 -1.366 -0.941 1.666 sum -12.547 -22.938 -0.398 26.148 Atomic orbital electron populations 1.20045 0.87376 1.02714 1.02283 1.22238 0.96788 0.89930 1.01816 1.77349 0.87358 1.21597 1.24007 1.49304 1.05982 1.03563 1.50831 1.19774 0.77588 0.89312 0.99183 1.21266 1.13402 1.31919 0.91187 0.91696 1.24924 0.95620 0.94941 0.98213 1.69911 1.19169 1.32742 1.31013 0.86385 0.78052 0.78495 0.83591 1.19889 1.20906 1.19924 1.20996 0.95805 0.86329 0.99854 1.20322 0.93426 0.96938 1.03391 1.17592 0.90527 0.81968 1.24935 1.84848 1.76432 1.23695 1.30268 1.19045 0.75481 0.85539 0.83656 1.90933 1.47822 1.64534 1.34553 1.18489 1.18923 0.91226 0.84016 1.21363 0.98764 0.92453 0.97024 1.21036 1.09225 0.98901 0.91014 1.19537 1.07952 0.87471 0.95138 1.20922 0.93844 0.98226 0.91764 1.21515 1.04655 0.98409 0.96697 1.24213 0.91968 0.90164 1.00469 1.76247 1.17993 1.25821 0.84606 1.45842 1.40059 1.09598 1.03179 0.91199 0.90869 0.91215 0.92504 0.92744 0.92116 0.89857 0.91416 0.90271 0.81392 0.82283 0.82599 0.83103 0.78531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.44 36.01 0.38 -0.73 16 2 C 0.06 1.26 7.22 -82.29 -0.59 0.67 16 3 N -0.28 -6.85 12.57 33.73 0.42 -6.43 16 4 N -0.32 -7.88 3.62 -58.03 -0.21 -8.09 16 5 C 0.26 6.84 6.01 -5.20 -0.03 6.81 16 6 C -0.54 -15.10 9.39 -34.44 -0.32 -15.43 16 7 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 8 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 9 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 10 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 C 0.10 2.33 6.97 -81.76 -0.57 1.76 16 15 C -0.08 -1.56 10.10 36.01 0.36 -1.20 16 16 C -0.10 -2.10 5.46 -39.79 -0.22 -2.32 16 17 O -0.24 -4.74 9.40 -26.32 -0.25 -4.99 16 18 C 0.52 9.49 7.70 31.96 0.25 9.73 16 19 O -0.49 -10.15 16.63 -19.45 -0.32 -10.47 16 20 C -0.01 -0.18 6.86 -83.77 -0.57 -0.76 16 21 C -0.07 -0.83 10.49 -39.27 -0.41 -1.24 16 22 C -0.18 -1.58 10.92 -39.17 -0.43 -2.01 16 23 C 0.01 0.12 6.80 -84.11 -0.57 -0.45 16 24 C -0.02 -0.13 10.11 -39.39 -0.40 -0.53 16 25 C -0.19 -1.00 10.04 -39.63 -0.40 -1.40 16 26 C 0.12 0.95 11.29 -17.41 -0.20 0.75 16 27 N -0.24 -3.02 11.27 30.61 0.34 -2.67 16 28 N -0.22 -2.97 4.01 -8.30 -0.03 -3.00 16 29 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.05 1.43 7.08 -51.93 -0.37 1.06 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.48 7.11 -51.93 -0.37 1.11 16 38 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.16 0.39 8.06 -52.48 -0.42 -0.03 16 41 H 0.15 0.26 8.06 -52.49 -0.42 -0.17 16 42 H 0.20 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -36.16 376.36 -7.42 -43.58 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.93 Total: -0.66 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -3.83 Total: -4.61 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 1.26 Total: -44.79 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.57 Total: -15.46 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.16 -7.42 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349956652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.729 kcal (2) G-P(sol) polarization free energy of solvation -36.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds