Wall clock time and date at job start Sat Apr 11 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35133 * 125.61742 * 2 1 4 4 C 1.40357 * 107.11492 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.64338 * 179.97438 * 4 3 2 6 6 C 1.36541 * 106.71163 * 359.97438 * 4 3 2 7 7 C 1.46653 * 125.99020 * 180.02562 * 6 4 3 8 8 O 1.21699 * 119.99858 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00028 * 180.02562 * 7 6 4 10 10 C 1.46502 * 119.99816 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47347 * 324.99474 * 10 9 7 12 12 C 1.52997 * 109.47534 * 84.99768 * 10 9 7 13 13 C 1.53003 * 109.46688 * 204.99800 * 10 9 7 14 14 N 1.46494 * 109.47462 * 55.00053 * 13 10 9 15 15 C 1.34773 * 120.00242 * 179.97438 * 14 13 10 16 16 O 1.21278 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.50708 * 120.00230 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47272 * 179.97438 * 17 15 14 19 19 C 1.76194 * 99.99812 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00597 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99989 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99647 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00172 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47216 * 89.99601 * 23 21 19 25 25 H 1.48492 * 109.47409 * 210.00038 * 23 21 19 26 26 H 1.48505 * 109.47066 * 329.99797 * 23 21 19 27 27 O 1.33927 * 125.61657 * 179.68865 * 2 1 3 28 28 H 1.09002 * 109.47152 * 89.99979 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00080 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00060 * 1 2 3 31 31 H 1.08001 * 126.43944 * 359.93978 * 3 2 1 32 32 H 1.09002 * 109.47643 * 90.02386 * 5 4 3 33 33 H 1.09000 * 109.47179 * 210.02357 * 5 4 3 34 34 H 1.09002 * 109.47206 * 330.02309 * 5 4 3 35 35 H 0.96998 * 120.00307 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47252 * 179.97438 * 12 10 9 37 37 H 1.08997 * 109.47182 * 300.00198 * 12 10 9 38 38 H 1.09002 * 109.47044 * 59.99520 * 12 10 9 39 39 H 1.09004 * 109.46908 * 174.99980 * 13 10 9 40 40 H 1.08998 * 109.47293 * 294.99492 * 13 10 9 41 41 H 0.97004 * 119.99561 * 359.97438 * 14 13 10 42 42 H 1.09002 * 109.46489 * 300.00033 * 17 15 14 43 43 H 1.08994 * 109.46845 * 59.99484 * 17 15 14 44 44 H 0.97000 * 119.99429 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 4.8617 1.5143 0.0003 6 6 3.5824 -0.7116 0.0015 7 6 4.7414 -1.6101 0.0029 8 8 5.8680 -1.1499 0.0038 9 7 4.5590 -2.9454 0.0032 10 6 5.7169 -3.8429 0.0052 11 1 6.5206 -3.4005 -0.5834 12 6 6.1951 -4.0554 1.4429 13 6 5.3198 -5.1889 -0.6044 14 7 4.7506 -4.9727 -1.9368 15 6 4.3283 -6.0233 -2.6679 16 8 4.4199 -7.1477 -2.2228 17 6 3.7433 -5.8009 -4.0388 18 16 3.2748 -7.3933 -4.7605 19 6 2.6393 -6.8510 -6.3118 20 1 2.6304 -5.7985 -6.5536 21 6 2.1489 -7.7765 -7.2227 22 7 2.1593 -9.0593 -6.9277 23 14 1.4745 -7.2015 -8.8670 24 1 2.5712 -7.1687 -9.8678 25 1 0.4163 -8.1382 -9.3229 26 1 0.8998 -5.8404 -8.7177 27 8 2.2870 -1.0887 0.0059 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.9613 2.1260 -0.0009 32 1 5.1599 1.7224 1.0279 33 1 5.6685 0.9915 -0.5134 34 1 4.6512 2.4522 -0.5139 35 1 3.6610 -3.3123 0.0029 36 1 7.0563 -4.7236 1.4443 37 1 6.4779 -3.0966 1.8772 38 1 5.3914 -4.4979 2.0315 39 1 6.2010 -5.8255 -0.6847 40 1 4.5794 -5.6722 0.0330 41 1 4.6777 -4.0734 -2.2929 42 1 2.8620 -5.1644 -3.9588 43 1 4.4839 -5.3175 -4.6758 44 1 1.8170 -9.7060 -7.5645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354258629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:09 Heat of formation + Delta-G solvation = -73.062742 kcal Electronic energy + Delta-G solvation = -26417.585087 eV Core-core repulsion = 22462.541272 eV Total energy + Delta-G solvation = -3955.043815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.07455 -40.13230 -39.07120 -36.62925 -34.51717 -33.66630 -32.87704 -32.43920 -31.47290 -29.41672 -28.30701 -27.45491 -26.01882 -25.38570 -22.83264 -21.84882 -21.05818 -20.38146 -20.03487 -18.57766 -17.82508 -16.92716 -16.75200 -16.28656 -16.13502 -15.46359 -15.10008 -15.01767 -14.81351 -14.50592 -14.12015 -14.00647 -13.59594 -13.53585 -13.40297 -13.27934 -13.10632 -12.99737 -12.91946 -12.88129 -12.70688 -12.56529 -12.25227 -11.96804 -11.81859 -11.32670 -11.07267 -11.03452 -10.77181 -10.42886 -9.99387 -9.83373 -9.60650 -9.43850 -9.08501 -8.97441 -8.75538 -8.25525 -6.51457 -6.22861 -3.93450 0.70262 1.95321 2.25789 2.78233 2.84169 3.01211 3.05953 3.21679 3.27131 3.31136 3.68293 4.16122 4.19348 4.33110 4.43259 4.50679 4.79184 4.88388 4.93095 5.00692 5.05212 5.12074 5.12434 5.17262 5.29366 5.31899 5.36113 5.41427 5.47793 5.50169 5.62865 5.73157 5.75973 5.82687 5.86646 5.88873 6.03729 6.12332 6.15002 6.51546 6.52910 7.11069 7.58526 7.62694 7.74077 8.34225 8.55234 9.22574 10.84588 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010676 B = 0.002515 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.180662 B =11129.793577 C =12860.408188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.029 3.971 3 C -0.227 4.227 4 C -0.079 4.079 5 C -0.095 4.095 6 C -0.094 4.094 7 C 0.608 3.392 8 O -0.518 6.518 9 N -0.717 5.717 10 C 0.132 3.868 11 H 0.099 0.901 12 C -0.161 4.161 13 C 0.113 3.887 14 N -0.740 5.740 15 C 0.533 3.467 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 O -0.161 6.161 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.155 0.845 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.408 0.592 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.399 0.601 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 21.502 18.123 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.024 4.024 3 C -0.246 4.246 4 C -0.082 4.082 5 C -0.152 4.152 6 C -0.146 4.146 7 C 0.395 3.605 8 O -0.396 6.396 9 N -0.369 5.369 10 C 0.027 3.973 11 H 0.117 0.883 12 C -0.220 4.220 13 C -0.012 4.012 14 N -0.396 5.396 15 C 0.319 3.681 16 O -0.390 6.390 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 O -0.057 6.057 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.173 0.827 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.243 0.757 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.233 0.767 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.154 19.407 18.818 27.119 hybrid contribution -1.098 2.088 -1.737 2.929 sum 1.057 21.495 17.082 27.476 Atomic orbital electron populations 1.20459 0.84403 1.04573 1.04307 1.22821 0.94326 0.84005 1.01217 1.21483 0.91836 0.99864 1.11405 1.20625 0.96396 0.92179 0.98998 1.20438 0.93856 0.98020 1.02863 1.21725 0.81976 0.94057 1.16828 1.16490 0.86076 0.81404 0.76501 1.90854 1.22049 1.75915 1.50746 1.46038 1.10786 1.05339 1.74771 1.21332 0.88728 0.89174 0.98045 0.88266 1.22114 1.01977 1.02912 0.94975 1.21621 1.00057 0.95385 0.84113 1.46003 1.65794 1.10141 1.17624 1.20317 0.77010 0.84315 0.86472 1.90708 1.53828 1.22841 1.71597 1.23535 1.03285 1.08163 0.95469 1.85379 1.79750 1.01050 1.17072 1.22866 1.47482 0.95843 1.02191 0.90942 1.24995 0.95305 0.94529 0.98759 1.70018 1.43727 1.00692 1.35855 0.86164 0.78643 0.78560 0.82113 1.20251 1.20743 1.19698 1.84009 1.15803 1.34791 1.71140 0.89249 0.88903 0.89965 0.82700 0.90801 0.89415 0.91418 0.75661 0.90795 0.91492 0.91915 0.89698 0.90816 0.76721 0.89265 0.89208 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.41 36.01 0.37 -0.02 16 2 C 0.03 0.24 7.31 -35.41 -0.26 -0.02 16 3 C -0.23 -1.91 10.73 -39.89 -0.43 -2.33 16 4 C -0.08 -0.80 6.20 -104.44 -0.65 -1.45 16 5 C -0.10 -0.83 9.81 36.01 0.35 -0.48 16 6 C -0.09 -1.03 7.13 -36.80 -0.26 -1.29 16 7 C 0.61 6.78 7.75 -12.86 -0.10 6.68 16 8 O -0.52 -6.79 14.40 5.19 0.07 -6.72 16 9 N -0.72 -6.66 4.51 -55.12 -0.25 -6.91 16 10 C 0.13 1.17 2.73 -67.93 -0.19 0.99 16 11 H 0.10 0.97 7.58 -51.93 -0.39 0.58 16 12 C -0.16 -1.24 9.48 37.16 0.35 -0.89 16 13 C 0.11 1.21 5.23 -4.04 -0.02 1.19 16 14 N -0.74 -9.61 5.39 -60.29 -0.32 -9.94 16 15 C 0.53 9.74 7.85 -10.98 -0.09 9.66 16 16 O -0.52 -11.43 15.86 5.56 0.09 -11.34 16 17 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 23 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 O -0.16 -1.65 10.40 5.00 0.05 -1.60 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.90 6.45 -51.93 -0.33 0.56 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.41 3.53 8.36 -40.82 -0.34 3.19 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.40 4.48 8.14 -40.82 -0.33 4.15 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -35.78 393.42 -7.86 -43.64 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.44 Total: 3.57 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.49 Total: -3.79 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.16 Total: -42.24 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.21 Total: -19.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.78 -7.86 -43.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354258629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.423 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds