Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35133 * 125.61742 * 2 1 4 4 C 1.40357 * 107.11492 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.64338 * 179.97438 * 4 3 2 6 6 C 1.36541 * 106.71163 * 359.97438 * 4 3 2 7 7 C 1.46653 * 125.99020 * 180.02562 * 6 4 3 8 8 O 1.21699 * 119.99858 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00028 * 180.02562 * 7 6 4 10 10 C 1.46502 * 119.99816 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47347 * 324.99474 * 10 9 7 12 12 C 1.52997 * 109.47534 * 84.99768 * 10 9 7 13 13 C 1.53003 * 109.46688 * 204.99800 * 10 9 7 14 14 N 1.46494 * 109.47462 * 55.00053 * 13 10 9 15 15 C 1.34773 * 120.00242 * 179.97438 * 14 13 10 16 16 O 1.21278 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.50708 * 120.00230 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47272 * 179.97438 * 17 15 14 19 19 C 1.76194 * 99.99812 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00597 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99989 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99647 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00172 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47216 * 89.99601 * 23 21 19 25 25 H 1.48492 * 109.47409 * 210.00038 * 23 21 19 26 26 H 1.48505 * 109.47066 * 329.99797 * 23 21 19 27 27 O 1.33927 * 125.61657 * 179.68865 * 2 1 3 28 28 H 1.09002 * 109.47152 * 89.99979 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00080 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00060 * 1 2 3 31 31 H 1.08001 * 126.43944 * 359.93978 * 3 2 1 32 32 H 1.09002 * 109.47643 * 90.02386 * 5 4 3 33 33 H 1.09000 * 109.47179 * 210.02357 * 5 4 3 34 34 H 1.09002 * 109.47206 * 330.02309 * 5 4 3 35 35 H 0.96998 * 120.00307 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47252 * 179.97438 * 12 10 9 37 37 H 1.08997 * 109.47182 * 300.00198 * 12 10 9 38 38 H 1.09002 * 109.47044 * 59.99520 * 12 10 9 39 39 H 1.09004 * 109.46908 * 174.99980 * 13 10 9 40 40 H 1.08998 * 109.47293 * 294.99492 * 13 10 9 41 41 H 0.97004 * 119.99561 * 359.97438 * 14 13 10 42 42 H 1.09002 * 109.46489 * 300.00033 * 17 15 14 43 43 H 1.08994 * 109.46845 * 59.99484 * 17 15 14 44 44 H 0.97000 * 119.99429 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 4.8617 1.5143 0.0003 6 6 3.5824 -0.7116 0.0015 7 6 4.7414 -1.6101 0.0029 8 8 5.8680 -1.1499 0.0038 9 7 4.5590 -2.9454 0.0032 10 6 5.7169 -3.8429 0.0052 11 1 6.5206 -3.4005 -0.5834 12 6 6.1951 -4.0554 1.4429 13 6 5.3198 -5.1889 -0.6044 14 7 4.7506 -4.9727 -1.9368 15 6 4.3283 -6.0233 -2.6679 16 8 4.4199 -7.1477 -2.2228 17 6 3.7433 -5.8009 -4.0388 18 16 3.2748 -7.3933 -4.7605 19 6 2.6393 -6.8510 -6.3118 20 1 2.6304 -5.7985 -6.5536 21 6 2.1489 -7.7765 -7.2227 22 7 2.1593 -9.0593 -6.9277 23 14 1.4745 -7.2015 -8.8670 24 1 2.5712 -7.1687 -9.8678 25 1 0.4163 -8.1382 -9.3229 26 1 0.8998 -5.8404 -8.7177 27 8 2.2870 -1.0887 0.0059 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.9613 2.1260 -0.0009 32 1 5.1599 1.7224 1.0279 33 1 5.6685 0.9915 -0.5134 34 1 4.6512 2.4522 -0.5139 35 1 3.6610 -3.3123 0.0029 36 1 7.0563 -4.7236 1.4443 37 1 6.4779 -3.0966 1.8772 38 1 5.3914 -4.4979 2.0315 39 1 6.2010 -5.8255 -0.6847 40 1 4.5794 -5.6722 0.0330 41 1 4.6777 -4.0734 -2.2929 42 1 2.8620 -5.1644 -3.9588 43 1 4.4839 -5.3175 -4.6758 44 1 1.8170 -9.7060 -7.5645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354258629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -98.325250 kcal Electronic energy + Delta-G solvation = -26418.680551 eV Core-core repulsion = 22462.541272 eV Total energy + Delta-G solvation = -3956.139280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.76261 -41.09863 -40.35948 -37.61025 -35.30480 -34.75428 -34.58697 -33.49019 -32.34191 -30.84418 -28.91079 -28.11101 -27.75052 -26.83559 -23.60518 -22.52029 -21.88153 -21.74112 -20.78127 -19.88276 -19.25919 -17.90123 -17.66966 -17.57339 -17.21110 -16.88551 -16.49295 -16.21718 -15.93594 -15.73681 -15.32341 -14.92742 -14.66332 -14.52052 -14.23444 -14.12474 -14.04017 -13.87311 -13.77253 -13.62459 -13.60608 -13.29432 -13.25193 -13.17540 -12.99062 -12.89595 -12.61902 -12.57376 -12.11806 -11.73586 -11.27132 -11.15110 -11.02626 -10.67363 -10.38265 -10.29574 -10.20065 -9.43981 -8.67441 -8.35588 -6.13494 -0.04185 1.25296 1.30097 1.41907 1.45602 1.54858 1.56599 1.58501 2.02293 2.05018 2.24951 2.28258 2.98613 3.30293 3.47618 3.58453 3.76972 3.82584 3.92304 4.01552 4.19754 4.26568 4.44212 4.47425 4.48452 4.53310 4.56700 4.65244 4.69570 4.72232 4.73304 4.75939 4.91329 4.97116 5.14824 5.19056 5.23665 5.29663 5.36351 5.41106 5.49638 5.83995 6.18985 6.33188 6.38666 6.93072 7.05858 7.16497 8.73606 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010676 B = 0.002515 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.180662 B =11129.793577 C =12860.408188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.027 3.973 3 C -0.234 4.234 4 C -0.088 4.088 5 C -0.093 4.093 6 C -0.123 4.123 7 C 0.608 3.392 8 O -0.544 6.544 9 N -0.710 5.710 10 C 0.142 3.858 11 H 0.095 0.905 12 C -0.156 4.156 13 C 0.115 3.885 14 N -0.716 5.716 15 C 0.537 3.463 16 O -0.559 6.559 17 C -0.132 4.132 18 S -0.145 6.145 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.998 3.002 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.258 1.258 27 O -0.173 6.173 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.412 0.588 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.411 0.589 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 23.957 18.067 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 C -0.252 4.252 4 C -0.091 4.091 5 C -0.149 4.149 6 C -0.174 4.174 7 C 0.396 3.604 8 O -0.424 6.424 9 N -0.362 5.362 10 C 0.037 3.963 11 H 0.113 0.887 12 C -0.214 4.214 13 C -0.009 4.009 14 N -0.370 5.370 15 C 0.323 3.677 16 O -0.437 6.437 17 C -0.283 4.283 18 S 0.082 5.918 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.182 1.182 27 O -0.070 6.070 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.198 0.802 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.248 0.752 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.247 0.753 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.255 21.904 18.788 28.885 hybrid contribution -0.813 1.429 -1.606 2.298 sum 0.442 23.333 17.183 28.981 Atomic orbital electron populations 1.20660 0.81887 1.05922 1.05206 1.23593 0.95740 0.83576 0.99597 1.21809 0.90975 1.01159 1.11276 1.20994 0.97638 0.92226 0.98278 1.20434 0.92882 0.98406 1.03194 1.21728 0.82268 0.94458 1.18951 1.16568 0.85939 0.81770 0.76127 1.90835 1.22988 1.76391 1.52162 1.45989 1.11067 1.04917 1.74206 1.21250 0.88370 0.87901 0.98736 0.88735 1.22073 1.02743 1.02830 0.93802 1.21762 1.00059 0.96483 0.82577 1.45750 1.63880 1.09413 1.17915 1.19977 0.77057 0.84603 0.86071 1.90700 1.55982 1.24681 1.72329 1.23384 1.04577 1.03904 0.96480 1.85520 1.80455 1.07466 1.18367 1.23197 1.47537 0.96354 1.02453 0.90082 1.26118 0.95379 0.94499 1.03092 1.70177 1.44829 1.02183 1.37498 0.84961 0.78014 0.78545 0.76511 1.19375 1.20189 1.18233 1.83996 1.15700 1.35749 1.71509 0.88397 0.86551 0.89632 0.80242 0.90270 0.91219 0.89523 0.75185 0.89459 0.92303 0.91191 0.89485 0.90486 0.75322 0.87392 0.87562 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.41 71.24 0.74 0.17 16 2 C 0.03 0.41 7.31 24.97 0.18 0.59 16 3 C -0.23 -3.48 10.73 22.07 0.24 -3.24 16 4 C -0.09 -1.71 6.20 -19.75 -0.12 -1.83 16 5 C -0.09 -1.55 9.81 71.24 0.70 -0.85 16 6 C -0.12 -2.63 7.13 24.07 0.17 -2.46 16 7 C 0.61 13.37 7.75 86.44 0.67 14.04 16 8 O -0.54 -14.29 14.40 -4.34 -0.06 -14.35 16 9 N -0.71 -12.56 4.51 -446.52 -2.01 -14.57 16 10 C 0.14 2.36 2.73 44.99 0.12 2.48 16 11 H 0.09 1.74 7.58 -2.39 -0.02 1.72 16 12 C -0.16 -2.20 9.48 71.98 0.68 -1.52 16 13 C 0.12 2.30 5.23 86.38 0.45 2.76 16 14 N -0.72 -17.58 5.39 -463.07 -2.49 -20.08 16 15 C 0.54 19.31 7.85 87.66 0.69 20.00 16 16 O -0.56 -25.00 15.86 -3.02 -0.05 -25.05 16 17 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 18 S -0.15 -8.02 20.57 -56.49 -1.16 -9.18 16 19 C -0.55 -31.25 9.50 67.96 0.65 -30.60 16 20 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 21 C 0.01 0.79 5.49 84.86 0.47 1.26 16 22 N -0.91 -55.75 13.22 21.65 0.29 -55.46 16 23 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 27 O -0.17 -3.39 10.40 -5.03 -0.05 -3.44 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.43 6.45 -2.39 -0.02 1.41 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.41 6.69 8.36 -92.71 -0.77 5.92 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.41 8.45 8.14 -92.71 -0.75 7.70 16 42 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 43 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 44 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -79.39 393.42 2.06 -77.33 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -0.49 Total: 23.28 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 6.08 Total: -3.98 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -4.22 Total: -90.11 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.16 Total: -42.84 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.18 kcal Total: -79.39 2.06 -77.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354258629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.997 kcal (2) G-P(sol) polarization free energy of solvation -79.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds