Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47230 * 2 1 4 4 O 1.33648 * 125.80024 * 270.33073 * 3 2 1 5 5 C 1.34220 * 110.90418 * 180.12925 * 4 3 2 6 6 C 1.34171 * 109.12740 * 359.58246 * 5 4 3 7 7 C 1.36413 * 125.79841 * 89.99896 * 3 2 1 8 8 C 1.47382 * 127.19721 * 0.02562 * 7 3 2 9 9 O 1.21613 * 119.99683 * 321.29088 * 8 7 3 10 10 N 1.34775 * 120.00126 * 141.29276 * 8 7 3 11 11 C 1.46493 * 120.00091 * 5.18530 * 10 8 7 12 12 C 1.46503 * 119.99452 * 185.19246 * 10 8 7 13 13 C 1.52998 * 109.47510 * 89.99728 * 12 10 8 14 14 N 1.46497 * 109.47094 * 179.97438 * 13 12 10 15 15 C 1.34779 * 119.99883 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99832 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00044 * 180.02562 * 15 14 13 18 18 S 1.80997 * 109.47146 * 179.97438 * 17 15 14 19 19 C 1.76192 * 99.99934 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00169 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00124 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00030 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00214 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47400 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47465 * 119.99691 * 23 21 19 26 26 H 1.48505 * 109.47279 * 239.99645 * 23 21 19 27 27 H 1.09006 * 109.46849 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47046 * 299.99521 * 1 2 3 29 29 H 1.08996 * 109.47428 * 59.99989 * 1 2 3 30 30 H 1.08999 * 109.47452 * 240.00489 * 2 1 3 31 31 H 1.08996 * 109.47428 * 120.00011 * 2 1 3 32 32 H 1.08004 * 125.43523 * 179.85209 * 5 4 3 33 33 H 1.07999 * 127.02613 * 180.24517 * 6 5 4 34 34 H 1.08998 * 109.47216 * 84.55358 * 11 10 8 35 35 H 1.09005 * 109.47144 * 204.55471 * 11 10 8 36 36 H 1.09001 * 109.47173 * 324.55294 * 11 10 8 37 37 H 1.09011 * 109.46498 * 209.99633 * 12 10 8 38 38 H 1.09000 * 109.47342 * 329.99238 * 12 10 8 39 39 H 1.08997 * 109.46750 * 299.99925 * 13 12 10 40 40 H 1.09000 * 109.47218 * 59.99434 * 13 12 10 41 41 H 0.96995 * 119.99924 * 0.02562 * 14 13 12 42 42 H 1.09001 * 109.46816 * 300.00071 * 17 15 14 43 43 H 1.09000 * 109.47172 * 59.99710 * 17 15 14 44 44 H 0.97001 * 120.00488 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2871 2.1600 -1.0839 5 6 2.7240 3.3813 -0.7389 6 6 2.7574 3.4745 0.5991 7 6 2.2983 2.1731 1.1064 8 6 2.1551 1.7666 2.5158 9 8 1.2132 1.0772 2.8570 10 7 3.0680 2.1589 3.4264 11 6 4.1384 3.0814 3.0401 12 6 2.9897 1.6627 4.8026 13 6 3.7990 0.3701 4.9256 14 7 3.7212 -0.1257 6.3019 15 6 4.3626 -1.2598 6.6469 16 8 5.0037 -1.8700 5.8178 17 6 4.2821 -1.7702 8.0626 18 16 5.2396 -3.2992 8.2080 19 6 4.9792 -3.6623 9.9124 20 1 4.3723 -3.0054 10.5179 21 6 5.5541 -4.7925 10.4769 22 7 6.2934 -5.5933 9.7389 23 14 5.2775 -5.1778 12.2836 24 1 4.4154 -4.1300 12.8869 25 1 4.6136 -6.5000 12.4119 26 1 6.5841 -5.2096 12.9887 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.0001 4.1655 -1.4284 33 1 3.0598 4.3305 1.1841 34 1 3.7755 4.1070 3.1058 35 1 4.9883 2.9529 3.7104 36 1 4.4480 2.8704 2.0164 37 1 3.3959 2.4117 5.4825 38 1 1.9488 1.4655 5.0592 39 1 3.3929 -0.3788 4.2457 40 1 4.8398 0.5673 4.6690 41 1 3.2081 0.3622 6.9648 42 1 4.6877 -1.0209 8.7425 43 1 3.2413 -1.9679 8.3189 44 1 6.6955 -6.3830 10.1334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355479519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -58.293452 kcal Electronic energy + Delta-G solvation = -26192.331732 eV Core-core repulsion = 22237.928361 eV Total energy + Delta-G solvation = -3954.403370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.99281 -40.04930 -39.03461 -36.31753 -34.54072 -34.38853 -33.09110 -32.41955 -30.52335 -29.23357 -28.41551 -26.93451 -25.49658 -24.60756 -23.53654 -22.47107 -21.26216 -20.38518 -19.18833 -17.98654 -17.82995 -16.78676 -16.65284 -16.49526 -16.27181 -15.77120 -15.35351 -15.12383 -14.85953 -14.79411 -14.60501 -13.98874 -13.89584 -13.78414 -13.49739 -13.29947 -13.12416 -12.95963 -12.61382 -12.56350 -12.50145 -12.28550 -12.07607 -11.84929 -11.39732 -11.30663 -11.06198 -11.00988 -10.75450 -10.37695 -10.08134 -9.80257 -9.45313 -9.12103 -9.07053 -8.92561 -8.90319 -8.22036 -6.48957 -6.20873 -3.91256 1.08593 1.67231 2.32411 2.51592 2.83558 3.10655 3.12369 3.22328 3.29863 3.36183 3.79074 4.06736 4.21169 4.21568 4.48406 4.67544 4.68954 4.74041 4.78583 4.92771 5.00373 5.05831 5.10874 5.14340 5.17944 5.22653 5.23782 5.33533 5.56804 5.61798 5.62919 5.67011 5.70314 5.81869 5.87601 5.91015 5.99308 6.12708 6.15520 6.58893 6.64162 6.97767 7.60835 7.68862 7.84068 8.36412 8.61407 9.24551 10.86625 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023883 B = 0.001825 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.124585 B =15336.577471 C =15801.973759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C 0.077 3.923 4 O -0.174 6.174 5 C -0.039 4.039 6 C -0.189 4.189 7 C -0.240 4.240 8 C 0.591 3.409 9 O -0.527 6.527 10 N -0.608 5.608 11 C 0.076 3.924 12 C 0.106 3.894 13 C 0.108 3.892 14 N -0.737 5.737 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.208 0.792 33 H 0.159 0.841 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 23.061 -20.034 31.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C 0.024 3.976 4 O -0.070 6.070 5 C -0.104 4.104 6 C -0.208 4.208 7 C -0.245 4.245 8 C 0.380 3.620 9 O -0.403 6.403 10 N -0.341 5.341 11 C -0.067 4.067 12 C -0.017 4.017 13 C -0.017 4.017 14 N -0.392 5.392 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.092 0.908 21 C -0.137 4.137 22 N -0.503 5.503 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.224 0.776 33 H 0.176 0.824 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.880 21.425 -21.545 31.390 hybrid contribution -0.866 1.104 2.564 2.923 sum -8.746 22.529 -18.981 30.730 Atomic orbital electron populations 1.21745 0.92881 1.02921 1.02870 1.20282 0.97421 0.86240 1.04641 1.22796 0.97245 0.94568 0.83009 1.83776 1.65158 1.23167 1.34888 1.23892 1.03914 0.86256 0.96376 1.22948 1.05713 0.97806 0.94365 1.21039 1.13527 0.96331 0.93586 1.17323 0.81624 0.79125 0.83910 1.90817 1.30927 1.38271 1.80330 1.47477 1.29191 1.47309 1.10128 1.22036 0.89963 0.92434 1.02280 1.21612 1.02535 0.95420 0.82152 1.21557 1.00428 0.95378 0.84385 1.45834 1.54801 1.27300 1.11279 1.20313 0.78078 0.79475 0.90236 1.90705 1.40132 1.56320 1.51894 1.23527 1.06189 1.05786 0.94828 1.85409 1.63579 1.20735 1.13712 1.22911 1.37296 1.12967 0.95098 0.90845 1.25001 0.94545 0.95098 0.99026 1.70029 1.30799 1.13497 1.35969 0.86108 0.78129 0.78365 0.82830 1.19613 1.20567 1.20588 0.91260 0.90999 0.92652 0.89663 0.88150 0.77568 0.82385 0.92393 0.90564 0.90360 0.89622 0.88807 0.91354 0.91566 0.76758 0.89159 0.89113 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.05 -0.43 5.93 -27.88 -0.17 -0.59 16 3 C 0.08 0.74 6.62 -34.96 -0.23 0.51 16 4 O -0.17 -1.49 10.52 7.65 0.08 -1.41 16 5 C -0.04 -0.23 12.03 29.30 0.35 0.12 16 6 C -0.19 -1.28 8.84 -37.45 -0.33 -1.61 16 7 C -0.24 -2.37 5.44 -103.27 -0.56 -2.93 16 8 C 0.59 6.81 7.32 -12.54 -0.09 6.72 16 9 O -0.53 -7.63 15.31 5.27 0.08 -7.54 16 10 N -0.61 -5.61 2.87 -182.86 -0.53 -6.14 16 11 C 0.08 0.45 9.10 59.84 0.54 1.00 16 12 C 0.11 0.97 5.54 -4.04 -0.02 0.95 16 13 C 0.11 1.34 6.00 -4.04 -0.02 1.32 16 14 N -0.74 -9.99 5.56 -60.30 -0.33 -10.33 16 15 C 0.53 10.14 7.85 -10.98 -0.09 10.05 16 16 O -0.52 -12.04 15.86 5.56 0.09 -11.95 16 17 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 20 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 23 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.10 1.01 7.65 -51.93 -0.40 0.61 16 32 H 0.21 0.39 8.06 -52.48 -0.42 -0.03 16 33 H 0.16 0.69 6.66 -52.49 -0.35 0.34 16 34 H 0.06 0.24 7.42 -51.93 -0.39 -0.14 16 35 H 0.08 0.39 8.03 -51.93 -0.42 -0.02 16 36 H 0.08 0.46 5.92 -51.93 -0.31 0.16 16 37 H 0.09 0.57 8.07 -51.92 -0.42 0.15 16 38 H 0.09 0.95 7.36 -51.93 -0.38 0.57 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -37.92 388.82 -7.41 -45.32 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.32 Total: 0.42 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 0.17 Total: -1.26 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.13 Total: -42.05 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: 0.25 Total: -20.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.92 -7.41 -45.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355479519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.970 kcal (2) G-P(sol) polarization free energy of solvation -37.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds