Wall clock time and date at job start Sat Apr 11 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35138 * 126.43921 * 2 1 4 4 O 1.33931 * 108.76589 * 179.75389 * 3 2 1 5 5 C 1.34922 * 109.38515 * 0.40411 * 4 3 2 6 6 C 1.46652 * 125.98730 * 179.86369 * 5 4 3 7 7 O 1.21699 * 119.99902 * 179.68559 * 6 5 4 8 8 N 1.34775 * 120.00416 * 359.68549 * 6 5 4 9 9 C 1.46498 * 120.00533 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47281 * 179.97438 * 9 8 6 11 11 H 1.09007 * 109.46691 * 55.00839 * 10 9 8 12 12 C 1.52994 * 109.47313 * 295.00596 * 10 9 8 13 13 C 1.53003 * 109.46790 * 175.00106 * 10 9 8 14 14 N 1.46499 * 109.46708 * 185.00148 * 13 10 9 15 15 C 1.34784 * 119.99893 * 180.02562 * 14 13 10 16 16 O 1.21283 * 119.99649 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99774 * 179.72962 * 15 14 13 18 18 S 1.81008 * 109.46759 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99946 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99996 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00252 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99702 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00159 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47239 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47003 * 120.00084 * 23 21 19 26 26 H 1.48500 * 109.46787 * 239.99933 * 23 21 19 27 27 C 1.36547 * 108.01992 * 359.59528 * 5 4 3 28 28 H 1.09002 * 109.46957 * 270.00205 * 1 2 3 29 29 H 1.09002 * 109.47596 * 30.00435 * 1 2 3 30 30 H 1.08999 * 109.47311 * 150.00676 * 1 2 3 31 31 H 1.07998 * 125.61593 * 359.96196 * 3 2 1 32 32 H 0.97002 * 119.99362 * 0.02562 * 8 6 5 33 33 H 1.09000 * 109.46701 * 60.00421 * 9 8 6 34 34 H 1.08998 * 109.47517 * 300.00740 * 9 8 6 35 35 H 1.09006 * 109.47245 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47110 * 299.99807 * 12 10 9 37 37 H 1.08995 * 109.47196 * 59.99903 * 12 10 9 38 38 H 1.08998 * 109.46692 * 65.00650 * 13 10 9 39 39 H 1.08994 * 109.47584 * 305.00514 * 13 10 9 40 40 H 0.97005 * 120.00261 * 0.02562 * 14 13 10 41 41 H 1.09001 * 109.46809 * 299.99238 * 17 15 14 42 42 H 1.08993 * 109.47525 * 59.99679 * 17 15 14 43 43 H 0.97000 * 119.99806 * 179.97438 * 22 21 19 44 44 H 1.08005 * 126.64309 * 180.21999 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0872 0.0000 4 8 3.5857 0.6806 0.0054 5 6 3.6261 -0.6680 0.0001 6 6 4.8379 -1.4939 0.0006 7 8 4.7472 -2.7075 0.0011 8 7 6.0521 -0.9090 0.0005 9 6 7.2627 -1.7340 0.0015 10 6 8.4965 -0.8292 0.0005 11 1 8.4409 -0.1381 0.8417 12 6 8.5473 -0.0375 -1.3076 13 6 9.7575 -1.6864 0.1274 14 7 10.9297 -0.8157 0.2465 15 6 12.1592 -1.3540 0.3699 16 8 12.2951 -2.5592 0.3817 17 6 13.3656 -0.4584 0.4863 18 16 14.8575 -1.4724 0.6364 19 6 16.0775 -0.2064 0.7523 20 1 15.7828 0.8321 0.7195 21 6 17.4172 -0.5438 0.8857 22 7 17.7763 -1.8096 0.9262 23 14 18.7106 0.7984 1.0094 24 1 18.0526 2.1278 0.9395 25 1 19.4344 0.6709 2.2996 26 1 19.6729 0.6633 -0.1135 27 6 2.3408 -1.1291 0.0001 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5137 31 1 1.9769 2.1146 -0.0006 32 1 6.1244 0.0583 0.0004 33 1 7.2739 -2.3639 -0.8880 34 1 7.2733 -2.3626 0.8920 35 1 9.4261 0.6075 -1.3081 36 1 8.6030 -0.7286 -2.1487 37 1 7.6490 0.5731 -1.3979 38 1 9.8601 -2.3148 -0.7573 39 1 9.6812 -2.3162 1.0136 40 1 10.8210 0.1482 0.2366 41 1 13.4403 0.1678 -0.4028 42 1 13.2652 0.1736 1.3685 43 1 18.7126 -2.0453 1.0191 44 1 2.0266 -2.1624 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357008631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:19 Heat of formation + Delta-G solvation = -74.583367 kcal Electronic energy + Delta-G solvation = -25184.800200 eV Core-core repulsion = 21229.690446 eV Total energy + Delta-G solvation = -3955.109754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.20719 -40.03510 -39.24570 -37.14945 -34.94586 -34.45177 -32.49356 -32.42515 -31.03501 -29.39196 -28.06067 -27.15374 -25.84256 -25.35838 -23.33001 -21.64230 -21.05472 -20.43277 -20.20418 -18.45257 -17.81800 -16.93430 -16.83861 -16.74765 -16.23768 -15.93549 -15.56919 -15.23184 -14.81243 -14.59738 -14.45371 -14.06522 -13.86975 -13.74813 -13.68623 -13.53725 -13.17997 -13.11474 -13.02753 -12.93497 -12.57038 -12.25531 -11.95388 -11.61292 -11.41455 -11.27109 -11.07690 -11.02635 -10.78440 -10.73036 -10.23426 -9.81437 -9.63246 -9.43211 -9.08665 -9.08208 -8.91480 -8.23767 -6.50667 -6.22453 -3.93005 0.56984 1.78694 2.16422 2.68047 2.73249 3.05494 3.08553 3.20962 3.27949 3.32531 3.70174 4.11332 4.19571 4.23813 4.36734 4.40710 4.45142 4.49174 4.79309 5.00343 5.06904 5.10607 5.12677 5.12891 5.25168 5.26571 5.32496 5.40387 5.42600 5.45538 5.51925 5.60598 5.65862 5.82141 5.86452 5.87365 5.88009 5.94637 6.12336 6.30814 6.57154 6.96401 7.59079 7.60818 7.67037 8.34650 8.59412 9.23036 10.85060 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.037670 B = 0.001427 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.123006 B =19622.888165 C =20187.479434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.194 4.194 3 C -0.008 4.008 4 O -0.163 6.163 5 C -0.078 4.078 6 C 0.603 3.397 7 O -0.517 6.517 8 N -0.717 5.717 9 C 0.125 3.875 10 C -0.115 4.115 11 H 0.086 0.914 12 C -0.151 4.151 13 C 0.129 3.871 14 N -0.738 5.738 15 C 0.531 3.469 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.116 4.116 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.210 0.790 32 H 0.406 0.594 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.452 9.274 -2.877 35.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.195 4.195 3 C -0.078 4.078 4 O -0.059 6.059 5 C -0.130 4.130 6 C 0.388 3.612 7 O -0.394 6.394 8 N -0.368 5.368 9 C 0.001 3.999 10 C -0.134 4.134 11 H 0.104 0.896 12 C -0.209 4.209 13 C 0.004 3.996 14 N -0.393 5.393 15 C 0.317 3.683 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.137 4.137 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.227 0.773 32 H 0.241 0.759 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -33.835 6.399 -2.838 34.551 hybrid contribution 0.468 3.225 0.071 3.259 sum -33.366 9.624 -2.767 34.837 Atomic orbital electron populations 1.20200 0.88487 1.03003 1.02482 1.20522 0.97847 0.92366 1.08750 1.24236 0.79832 1.00130 1.03606 1.84051 1.29454 1.21637 1.70717 1.22026 0.96126 0.80587 1.14219 1.16518 0.81225 0.86378 0.77033 1.90919 1.85959 1.12229 1.50326 1.45867 1.05329 1.10943 1.74676 1.21404 0.81751 0.93090 1.03629 1.21600 0.93855 0.98006 0.99971 0.89590 1.21906 1.02043 1.00327 0.96594 1.21159 0.83055 0.92615 1.02777 1.45966 1.06047 1.09919 1.77386 1.20311 0.83538 0.89167 0.75247 1.90713 1.85552 1.15021 1.47705 1.23528 0.98941 1.03081 1.04850 1.85423 0.92669 1.09585 1.95698 1.22909 0.93336 0.93894 1.58239 0.90884 1.24992 0.97823 0.96191 0.94557 1.70030 1.17584 1.16026 1.46619 0.86117 0.80555 0.80888 0.77936 1.19629 1.20560 1.20565 1.21885 0.90546 1.00707 1.00518 0.91137 0.91350 0.91169 0.77345 0.75878 0.90332 0.90359 0.91756 0.91811 0.92526 0.91075 0.91158 0.76835 0.89224 0.89244 0.92223 0.82191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.39 36.00 0.37 0.08 16 2 C -0.19 -1.16 6.14 -104.93 -0.64 -1.80 16 3 C -0.01 -0.04 12.00 29.63 0.36 0.31 16 4 O -0.16 -1.16 10.40 4.97 0.05 -1.11 16 5 C -0.08 -0.68 7.13 -36.80 -0.26 -0.94 16 6 C 0.60 6.01 7.79 -12.87 -0.10 5.91 16 7 O -0.52 -6.88 16.87 5.19 0.09 -6.80 16 8 N -0.72 -5.36 5.28 -61.63 -0.33 -5.68 16 9 C 0.12 0.97 5.06 -4.04 -0.02 0.95 16 10 C -0.12 -0.79 2.46 -90.62 -0.22 -1.02 16 11 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 12 C -0.15 -0.95 8.94 37.15 0.33 -0.62 16 13 C 0.13 1.35 5.07 -4.04 -0.02 1.33 16 14 N -0.74 -9.12 5.28 -60.30 -0.32 -9.44 16 15 C 0.53 9.66 7.85 -10.98 -0.09 9.57 16 16 O -0.52 -11.61 15.86 5.56 0.09 -11.52 16 17 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 23 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C -0.12 -0.93 10.57 -39.39 -0.42 -1.35 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.21 0.23 8.06 -52.49 -0.42 -0.19 16 32 H 0.41 2.22 7.41 -40.82 -0.30 1.92 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.41 7.18 -51.93 -0.37 0.04 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.29 7.18 -51.93 -0.37 -0.09 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 3.70 7.66 -40.82 -0.31 3.39 16 41 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 LS Contribution 394.12 15.07 5.94 5.94 Total: -1.00 -37.17 394.12 -7.67 -44.84 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.40 Total: -0.01 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.29 Total: -3.27 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.09 Total: -40.51 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.23 Total: -19.43 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.17 -7.67 -44.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357008631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.743 kcal (2) G-P(sol) polarization free energy of solvation -37.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds