Wall clock time and date at job start Sat Apr 11 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35138 * 126.43921 * 2 1 4 4 O 1.33931 * 108.76589 * 179.75389 * 3 2 1 5 5 C 1.34922 * 109.38515 * 0.40411 * 4 3 2 6 6 C 1.46652 * 125.98730 * 179.86369 * 5 4 3 7 7 O 1.21699 * 119.99902 * 179.68559 * 6 5 4 8 8 N 1.34775 * 120.00416 * 359.68549 * 6 5 4 9 9 C 1.46498 * 120.00533 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47281 * 179.97438 * 9 8 6 11 11 H 1.09007 * 109.46691 * 55.00839 * 10 9 8 12 12 C 1.52994 * 109.47313 * 295.00596 * 10 9 8 13 13 C 1.53003 * 109.46790 * 175.00106 * 10 9 8 14 14 N 1.46499 * 109.46708 * 185.00148 * 13 10 9 15 15 C 1.34784 * 119.99893 * 180.02562 * 14 13 10 16 16 O 1.21283 * 119.99649 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99774 * 179.72962 * 15 14 13 18 18 S 1.81008 * 109.46759 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99946 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99996 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00252 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99702 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00159 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47239 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47003 * 120.00084 * 23 21 19 26 26 H 1.48500 * 109.46787 * 239.99933 * 23 21 19 27 27 C 1.36547 * 108.01992 * 359.59528 * 5 4 3 28 28 H 1.09002 * 109.46957 * 270.00205 * 1 2 3 29 29 H 1.09002 * 109.47596 * 30.00435 * 1 2 3 30 30 H 1.08999 * 109.47311 * 150.00676 * 1 2 3 31 31 H 1.07998 * 125.61593 * 359.96196 * 3 2 1 32 32 H 0.97002 * 119.99362 * 0.02562 * 8 6 5 33 33 H 1.09000 * 109.46701 * 60.00421 * 9 8 6 34 34 H 1.08998 * 109.47517 * 300.00740 * 9 8 6 35 35 H 1.09006 * 109.47245 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47110 * 299.99807 * 12 10 9 37 37 H 1.08995 * 109.47196 * 59.99903 * 12 10 9 38 38 H 1.08998 * 109.46692 * 65.00650 * 13 10 9 39 39 H 1.08994 * 109.47584 * 305.00514 * 13 10 9 40 40 H 0.97005 * 120.00261 * 0.02562 * 14 13 10 41 41 H 1.09001 * 109.46809 * 299.99238 * 17 15 14 42 42 H 1.08993 * 109.47525 * 59.99679 * 17 15 14 43 43 H 0.97000 * 119.99806 * 179.97438 * 22 21 19 44 44 H 1.08005 * 126.64309 * 180.21999 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0872 0.0000 4 8 3.5857 0.6806 0.0054 5 6 3.6261 -0.6680 0.0001 6 6 4.8379 -1.4939 0.0006 7 8 4.7472 -2.7075 0.0011 8 7 6.0521 -0.9090 0.0005 9 6 7.2627 -1.7340 0.0015 10 6 8.4965 -0.8292 0.0005 11 1 8.4409 -0.1381 0.8417 12 6 8.5473 -0.0375 -1.3076 13 6 9.7575 -1.6864 0.1274 14 7 10.9297 -0.8157 0.2465 15 6 12.1592 -1.3540 0.3699 16 8 12.2951 -2.5592 0.3817 17 6 13.3656 -0.4584 0.4863 18 16 14.8575 -1.4724 0.6364 19 6 16.0775 -0.2064 0.7523 20 1 15.7828 0.8321 0.7195 21 6 17.4172 -0.5438 0.8857 22 7 17.7763 -1.8096 0.9262 23 14 18.7106 0.7984 1.0094 24 1 18.0526 2.1278 0.9395 25 1 19.4344 0.6709 2.2996 26 1 19.6729 0.6633 -0.1135 27 6 2.3408 -1.1291 0.0001 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5137 31 1 1.9769 2.1146 -0.0006 32 1 6.1244 0.0583 0.0004 33 1 7.2739 -2.3639 -0.8880 34 1 7.2733 -2.3626 0.8920 35 1 9.4261 0.6075 -1.3081 36 1 8.6030 -0.7286 -2.1487 37 1 7.6490 0.5731 -1.3979 38 1 9.8601 -2.3148 -0.7573 39 1 9.6812 -2.3162 1.0136 40 1 10.8210 0.1482 0.2366 41 1 13.4403 0.1678 -0.4028 42 1 13.2652 0.1736 1.3685 43 1 18.7126 -2.0453 1.0191 44 1 2.0266 -2.1624 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357008631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:18 Heat of formation + Delta-G solvation = -102.016474 kcal Electronic energy + Delta-G solvation = -25185.989789 eV Core-core repulsion = 21229.690446 eV Total energy + Delta-G solvation = -3956.299343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.70959 -40.88871 -40.49400 -38.05065 -35.74289 -35.11164 -34.57677 -33.46377 -31.62184 -30.78726 -28.48258 -27.82202 -27.61614 -26.55219 -24.00244 -22.18899 -21.84480 -21.64855 -20.89599 -19.81248 -18.97447 -17.78664 -17.70049 -17.47335 -17.25389 -16.87654 -16.80199 -16.68713 -16.28596 -15.79397 -15.42427 -15.16834 -14.82275 -14.45361 -14.36519 -14.32259 -14.09957 -13.97053 -13.92905 -13.69103 -13.52359 -13.33028 -13.15009 -12.90838 -12.60412 -12.57350 -12.24236 -12.19717 -11.90255 -11.70615 -11.55404 -11.15239 -10.96588 -10.76244 -10.33519 -10.25609 -10.11331 -9.56020 -8.65850 -8.34091 -6.12051 -0.01895 1.27530 1.32080 1.42083 1.47236 1.56712 1.62299 1.62838 2.03463 2.07169 2.27708 2.39155 3.00423 3.33059 3.58134 3.73795 3.75343 3.80460 3.82410 4.03555 4.05934 4.31658 4.33497 4.37294 4.48441 4.52880 4.62715 4.71353 4.76110 4.85922 4.87319 4.92364 4.94255 5.02142 5.06828 5.10046 5.21249 5.34728 5.42949 5.44610 5.49318 5.80284 6.20838 6.34944 6.51631 6.93046 7.07539 7.26168 8.75440 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.037670 B = 0.001427 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.123006 B =19622.888165 C =20187.479434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.208 4.208 3 C 0.008 3.992 4 O -0.164 6.164 5 C -0.102 4.102 6 C 0.600 3.400 7 O -0.562 6.562 8 N -0.701 5.701 9 C 0.127 3.873 10 C -0.095 4.095 11 H 0.107 0.893 12 C -0.151 4.151 13 C 0.126 3.874 14 N -0.708 5.708 15 C 0.533 3.467 16 O -0.567 6.567 17 C -0.129 4.129 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.127 4.127 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.253 0.747 32 H 0.418 0.582 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.036 13.326 -2.955 38.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.209 4.209 3 C -0.061 4.061 4 O -0.060 6.060 5 C -0.154 4.154 6 C 0.387 3.613 7 O -0.443 6.443 8 N -0.353 5.353 9 C 0.003 3.997 10 C -0.114 4.114 11 H 0.126 0.874 12 C -0.209 4.209 13 C 0.002 3.998 14 N -0.363 5.363 15 C 0.318 3.682 16 O -0.446 6.446 17 C -0.280 4.280 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.148 4.148 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.268 0.732 32 H 0.256 0.744 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.255 0.745 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -35.458 10.533 -2.922 37.105 hybrid contribution 0.756 2.012 0.079 2.151 sum -34.702 12.545 -2.844 37.009 Atomic orbital electron populations 1.20261 0.86813 1.03853 1.03099 1.20841 0.99107 0.91827 1.09174 1.25113 0.78724 1.01637 1.00630 1.84042 1.30633 1.20566 1.70743 1.21736 0.95635 0.81395 1.16652 1.16721 0.82119 0.86026 0.76391 1.90887 1.86677 1.14097 1.52648 1.45716 1.04511 1.11497 1.73546 1.21321 0.82262 0.93259 1.02883 1.21422 0.91189 0.97367 1.01445 0.87447 1.21924 1.03238 1.00213 0.95487 1.21270 0.83645 0.92939 1.01953 1.45651 1.04622 1.11221 1.74797 1.20079 0.84729 0.88140 0.75224 1.90705 1.86364 1.16987 1.50507 1.23369 0.95690 1.02129 1.06830 1.85628 0.97522 1.13572 1.96087 1.23245 0.93823 0.94145 1.58062 0.89790 1.26126 1.00409 0.98789 0.93807 1.70197 1.18224 1.18626 1.47839 0.84904 0.77119 0.77905 0.78009 1.17885 1.20015 1.20017 1.22105 0.91140 1.01343 1.00174 0.90588 0.89414 0.91467 0.73165 0.74405 0.91231 0.91242 0.91178 0.92800 0.90719 0.92130 0.92064 0.74486 0.87037 0.87059 0.92031 0.82846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.39 71.23 0.74 0.32 16 2 C -0.21 -2.13 6.14 -20.06 -0.12 -2.26 16 3 C 0.01 0.06 12.00 67.11 0.81 0.86 16 4 O -0.16 -2.00 10.40 -5.13 -0.05 -2.06 16 5 C -0.10 -1.74 7.13 24.07 0.17 -1.57 16 6 C 0.60 12.12 7.79 86.44 0.67 12.79 16 7 O -0.56 -15.76 16.87 -4.35 -0.07 -15.83 16 8 N -0.70 -9.80 5.28 -467.11 -2.47 -12.27 16 9 C 0.13 1.89 5.06 86.38 0.44 2.33 16 10 C -0.10 -1.12 2.46 -10.80 -0.03 -1.14 16 11 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 12 C -0.15 -1.51 8.94 71.98 0.64 -0.86 16 13 C 0.13 2.53 5.07 86.38 0.44 2.97 16 14 N -0.71 -16.11 5.28 -463.06 -2.45 -18.56 16 15 C 0.53 18.99 7.85 87.65 0.69 19.68 16 16 O -0.57 -26.13 15.86 -3.04 -0.05 -26.17 16 17 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 18 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 19 C -0.54 -30.87 9.50 67.95 0.65 -30.22 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.75 5.49 84.86 0.47 1.22 16 22 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 23 Si 1.00 43.30 29.55 68.60 2.03 45.32 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C -0.13 -2.03 10.57 22.39 0.24 -1.79 16 28 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.25 -0.62 8.06 -2.91 -0.02 -0.64 16 32 H 0.42 3.66 7.41 -92.71 -0.69 2.97 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 0.65 7.18 -2.38 -0.02 0.63 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.51 7.18 -2.39 -0.02 0.49 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.42 6.32 7.66 -92.70 -0.71 5.61 16 41 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 42 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -85.06 394.12 1.93 -83.13 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -0.36 Total: 14.13 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 6.23 Total: -2.19 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -4.63 Total: -86.60 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.17 Total: -44.06 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -85.06 1.93 -83.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357008631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.888 kcal (2) G-P(sol) polarization free energy of solvation -85.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds