Wall clock time and date at job start Sat Apr 11 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34510 * 125.78861 * 2 1 4 4 C 1.41384 * 106.84349 * 180.02562 * 3 2 1 5 5 C 1.34513 * 106.84110 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.79228 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47042 * 90.00182 * 6 5 4 8 8 O 1.21279 * 120.00024 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99935 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.53000 * 109.46840 * 155.00060 * 10 9 7 14 14 N 1.46504 * 109.47054 * 304.99499 * 13 10 9 15 15 C 1.34777 * 120.00071 * 180.02562 * 14 13 10 16 16 O 1.21281 * 119.99830 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00142 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47076 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99786 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00495 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00098 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99583 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46781 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46685 * 120.00530 * 23 21 19 26 26 H 1.48496 * 109.47112 * 240.00327 * 23 21 19 27 27 O 1.34300 * 108.41775 * 0.26769 * 5 4 3 28 28 H 1.08996 * 109.47045 * 90.00311 * 1 2 3 29 29 H 1.09007 * 109.47016 * 209.99942 * 1 2 3 30 30 H 1.08997 * 109.47225 * 329.99557 * 1 2 3 31 31 H 1.08006 * 126.58067 * 0.05682 * 3 2 1 32 32 H 1.07999 * 126.58054 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.47190 * 330.00302 * 6 5 4 34 34 H 1.08995 * 109.47434 * 210.00286 * 6 5 4 35 35 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 37 37 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 38 38 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 39 39 H 1.08991 * 109.47625 * 64.99762 * 13 10 9 40 40 H 1.09002 * 109.46642 * 184.99913 * 13 10 9 41 41 H 0.97000 * 119.99700 * 0.02562 * 14 13 10 42 42 H 1.09001 * 109.47456 * 300.00106 * 17 15 14 43 43 H 1.09002 * 109.47145 * 60.00200 * 17 15 14 44 44 H 0.97009 * 119.99727 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 6 5.1671 -1.9461 1.4206 8 8 4.5455 -1.4615 2.3424 9 7 6.2131 -2.7596 1.6670 10 6 6.5981 -3.0597 3.0482 11 1 5.7051 -3.1123 3.6711 12 6 7.5207 -1.9570 3.5715 13 6 7.3311 -4.4019 3.0931 14 7 6.4929 -5.4367 2.4823 15 6 6.9364 -6.7074 2.4102 16 8 8.0291 -6.9943 2.8513 17 6 6.0745 -7.7717 1.7814 18 16 6.9416 -9.3596 1.8346 19 6 5.7413 -10.3898 1.0584 20 1 4.8062 -9.9687 0.7195 21 6 5.9978 -11.7423 0.8814 22 7 7.1376 -12.2555 1.2939 23 14 4.7250 -12.8347 0.0591 24 1 3.5384 -12.0213 -0.3091 25 1 5.3088 -13.4400 -1.1648 26 1 4.3163 -13.9110 0.9970 27 8 2.2925 -1.0894 -0.0056 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.9664 2.1204 0.0009 32 1 4.5211 1.2434 -0.0004 33 1 5.6040 -1.1587 -0.5142 34 1 4.5107 -2.5633 -0.5139 35 1 6.7104 -3.1468 0.9297 36 1 8.4137 -1.9044 2.9487 37 1 6.9985 -1.0008 3.5396 38 1 7.8075 -2.1805 4.5991 39 1 8.2687 -4.3225 2.5431 40 1 7.5391 -4.6678 4.1295 41 1 5.6188 -5.2073 2.1299 42 1 5.1364 -7.8510 2.3307 43 1 5.8672 -7.5059 0.7448 44 1 7.3168 -13.2009 1.1705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358125478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:24 Heat of formation + Delta-G solvation = -69.859916 kcal Electronic energy + Delta-G solvation = -25910.979658 eV Core-core repulsion = 21956.074728 eV Total energy + Delta-G solvation = -3954.904930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.85576 -40.26938 -39.12413 -36.58163 -33.76764 -33.46573 -33.34434 -32.45032 -31.65333 -29.98257 -29.36672 -26.09986 -25.52947 -25.31955 -22.32542 -21.88369 -20.93362 -20.41091 -20.31400 -18.07826 -17.63607 -17.21298 -16.42927 -16.31720 -16.28247 -15.74679 -15.59465 -15.08125 -14.82472 -14.66467 -14.08577 -14.05723 -13.74998 -13.53209 -13.29138 -13.20392 -13.11927 -13.06734 -12.94057 -12.83891 -12.60826 -12.41199 -12.23136 -11.94785 -11.83905 -11.32437 -11.08741 -11.04325 -10.77592 -10.29625 -10.09200 -9.83489 -9.56722 -9.43754 -9.10508 -8.99907 -8.54335 -8.26586 -6.52946 -6.24188 -3.94893 1.39370 2.25069 2.29091 2.53216 2.87857 2.99734 3.04747 3.20104 3.26719 3.31242 3.66463 4.14747 4.18051 4.31331 4.50654 4.55158 4.72336 4.75694 4.80684 4.90714 4.93943 5.08395 5.09766 5.10343 5.11221 5.30204 5.34712 5.36868 5.49080 5.54349 5.63499 5.68867 5.71947 5.84396 5.86869 5.88604 6.09468 6.10514 6.27492 6.49615 6.90851 7.08159 7.57539 7.60568 7.83640 8.33156 8.52961 9.21458 10.83245 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011264 B = 0.002159 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.303840 B =12965.226877 C =15110.375502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.009 4.009 3 C -0.213 4.213 4 C -0.192 4.192 5 C 0.002 3.998 6 C -0.062 4.062 7 C 0.516 3.484 8 O -0.526 6.526 9 N -0.726 5.726 10 C 0.132 3.868 11 H 0.096 0.904 12 C -0.160 4.160 13 C 0.113 3.887 14 N -0.740 5.740 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 O -0.170 6.170 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.405 0.595 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.140 28.185 -3.257 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.232 4.232 4 C -0.211 4.211 5 C -0.048 4.048 6 C -0.102 4.102 7 C 0.301 3.699 8 O -0.401 6.401 9 N -0.380 5.380 10 C 0.027 3.973 11 H 0.114 0.886 12 C -0.219 4.219 13 C -0.012 4.012 14 N -0.396 5.396 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 O -0.066 6.066 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.240 0.760 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.742 27.593 -1.809 28.242 hybrid contribution -2.086 -0.237 -1.533 2.600 sum -7.828 27.356 -3.342 28.650 Atomic orbital electron populations 1.20313 0.85124 1.04170 1.03465 1.22426 0.93985 0.84083 1.05481 1.21523 0.92644 0.99343 1.09724 1.21476 0.98249 0.93623 1.07755 1.21352 0.82678 0.93743 1.07022 1.20094 0.93861 1.00540 0.95697 1.20419 0.79835 0.78593 0.91025 1.90762 1.52701 1.50580 1.46036 1.46093 1.32935 1.49924 1.09042 1.21260 0.99127 0.93724 0.83163 0.88631 1.22102 0.99402 0.98624 1.01788 1.21616 0.94144 0.85219 1.00173 1.46006 1.21469 1.08284 1.63804 1.20325 0.87065 0.82295 0.78472 1.90712 1.21245 1.80919 1.46103 1.23531 1.02929 1.00985 1.02997 1.85397 1.24551 0.94323 1.79063 1.22903 1.04677 0.95736 1.45000 0.90876 1.25002 0.96111 0.97107 0.95416 1.70030 1.22551 1.13603 1.44079 0.86109 0.80553 0.79865 0.78931 1.19611 1.20558 1.20548 1.83933 1.16145 1.35151 1.71412 0.90096 0.90450 0.89348 0.83558 0.83653 0.85747 0.86721 0.76034 0.91941 0.91615 0.91015 0.90826 0.89923 0.76728 0.89216 0.89235 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.42 36.00 0.37 -0.07 16 2 C -0.01 -0.09 7.32 -35.63 -0.26 -0.35 16 3 C -0.21 -2.00 10.81 -39.70 -0.43 -2.42 16 4 C -0.19 -1.85 10.81 -39.70 -0.43 -2.28 16 5 C 0.00 0.02 5.81 -35.63 -0.21 -0.18 16 6 C -0.06 -0.43 6.23 -29.03 -0.18 -0.61 16 7 C 0.52 4.74 7.79 -10.98 -0.09 4.65 16 8 O -0.53 -7.14 15.70 5.56 0.09 -7.06 16 9 N -0.73 -5.22 4.52 -53.80 -0.24 -5.47 16 10 C 0.13 1.10 2.73 -67.93 -0.19 0.91 16 11 H 0.10 0.95 7.58 -51.93 -0.39 0.56 16 12 C -0.16 -1.18 9.48 37.16 0.35 -0.83 16 13 C 0.11 1.14 5.23 -4.04 -0.02 1.12 16 14 N -0.74 -9.04 5.39 -60.30 -0.32 -9.36 16 15 C 0.53 9.42 7.85 -10.99 -0.09 9.34 16 16 O -0.52 -11.22 15.86 5.56 0.09 -11.13 16 17 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.53 -15.08 9.50 30.94 0.29 -14.79 16 20 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 23 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 O -0.17 -1.98 10.65 5.70 0.06 -1.91 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.40 2.12 8.60 -40.82 -0.35 1.77 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.40 4.08 8.14 -40.82 -0.33 3.75 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 396.67 15.07 5.98 5.98 Total: -1.00 -38.04 396.67 -8.13 -46.18 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.54 Total: 1.91 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.74 Total: -6.34 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.17 Total: -40.05 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.24 Total: -20.11 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.04 -8.13 -46.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358125478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.683 kcal (2) G-P(sol) polarization free energy of solvation -38.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds