Wall clock time and date at job start Sat Apr 11 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34510 * 125.78861 * 2 1 4 4 C 1.41384 * 106.84349 * 180.02562 * 3 2 1 5 5 C 1.34513 * 106.84110 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.79228 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47042 * 90.00182 * 6 5 4 8 8 O 1.21279 * 120.00024 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99935 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.53000 * 109.46840 * 155.00060 * 10 9 7 14 14 N 1.46504 * 109.47054 * 304.99499 * 13 10 9 15 15 C 1.34777 * 120.00071 * 180.02562 * 14 13 10 16 16 O 1.21281 * 119.99830 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00142 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47076 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99786 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00495 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00098 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99583 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46781 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46685 * 120.00530 * 23 21 19 26 26 H 1.48496 * 109.47112 * 240.00327 * 23 21 19 27 27 O 1.34300 * 108.41775 * 0.26769 * 5 4 3 28 28 H 1.08996 * 109.47045 * 90.00311 * 1 2 3 29 29 H 1.09007 * 109.47016 * 209.99942 * 1 2 3 30 30 H 1.08997 * 109.47225 * 329.99557 * 1 2 3 31 31 H 1.08006 * 126.58067 * 0.05682 * 3 2 1 32 32 H 1.07999 * 126.58054 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.47190 * 330.00302 * 6 5 4 34 34 H 1.08995 * 109.47434 * 210.00286 * 6 5 4 35 35 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 37 37 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 38 38 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 39 39 H 1.08991 * 109.47625 * 64.99762 * 13 10 9 40 40 H 1.09002 * 109.46642 * 184.99913 * 13 10 9 41 41 H 0.97000 * 119.99700 * 0.02562 * 14 13 10 42 42 H 1.09001 * 109.47456 * 300.00106 * 17 15 14 43 43 H 1.09002 * 109.47145 * 60.00200 * 17 15 14 44 44 H 0.97009 * 119.99727 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 6 5.1671 -1.9461 1.4206 8 8 4.5455 -1.4615 2.3424 9 7 6.2131 -2.7596 1.6670 10 6 6.5981 -3.0597 3.0482 11 1 5.7051 -3.1123 3.6711 12 6 7.5207 -1.9570 3.5715 13 6 7.3311 -4.4019 3.0931 14 7 6.4929 -5.4367 2.4823 15 6 6.9364 -6.7074 2.4102 16 8 8.0291 -6.9943 2.8513 17 6 6.0745 -7.7717 1.7814 18 16 6.9416 -9.3596 1.8346 19 6 5.7413 -10.3898 1.0584 20 1 4.8062 -9.9687 0.7195 21 6 5.9978 -11.7423 0.8814 22 7 7.1376 -12.2555 1.2939 23 14 4.7250 -12.8347 0.0591 24 1 3.5384 -12.0213 -0.3091 25 1 5.3088 -13.4400 -1.1648 26 1 4.3163 -13.9110 0.9970 27 8 2.2925 -1.0894 -0.0056 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.9664 2.1204 0.0009 32 1 4.5211 1.2434 -0.0004 33 1 5.6040 -1.1587 -0.5142 34 1 4.5107 -2.5633 -0.5139 35 1 6.7104 -3.1468 0.9297 36 1 8.4137 -1.9044 2.9487 37 1 6.9985 -1.0008 3.5396 38 1 7.8075 -2.1805 4.5991 39 1 8.2687 -4.3225 2.5431 40 1 7.5391 -4.6678 4.1295 41 1 5.6188 -5.2073 2.1299 42 1 5.1364 -7.8510 2.3307 43 1 5.8672 -7.5059 0.7448 44 1 7.3168 -13.2009 1.1705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358125478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:23 Heat of formation + Delta-G solvation = -97.471215 kcal Electronic energy + Delta-G solvation = -25912.176973 eV Core-core repulsion = 21956.074728 eV Total energy + Delta-G solvation = -3956.102246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.54423 -41.12672 -40.37816 -37.51533 -34.84903 -34.57805 -34.17722 -33.98430 -32.44242 -30.95941 -30.34395 -27.74047 -26.85906 -26.06656 -23.04994 -22.59725 -21.76447 -21.63410 -21.01332 -19.86210 -18.53800 -18.02395 -17.71294 -17.28328 -17.09996 -16.87991 -16.68798 -16.39219 -16.27390 -15.81581 -15.36756 -14.83625 -14.76912 -14.53437 -14.32049 -14.18265 -13.88581 -13.76081 -13.74351 -13.71223 -13.51866 -13.25073 -13.15746 -12.97519 -12.94993 -12.91148 -12.58995 -12.51962 -12.07131 -11.70682 -11.15819 -11.08664 -10.99740 -10.79444 -10.27239 -10.23326 -10.16213 -9.20883 -8.65919 -8.34943 -6.12346 0.70441 1.27023 1.41317 1.46951 1.55908 1.58301 1.59737 1.62425 1.91891 2.19081 2.27230 2.34695 2.99409 3.31862 3.53649 3.57859 3.89113 3.95451 4.00871 4.05239 4.13242 4.23114 4.29478 4.30325 4.45434 4.51618 4.58039 4.58520 4.69629 4.71755 4.76601 4.86232 4.91191 4.98306 5.06673 5.22683 5.29812 5.36935 5.42467 5.43976 5.64914 6.20106 6.22267 6.42435 6.47323 7.06900 7.18060 7.20460 8.74333 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011264 B = 0.002159 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.303840 B =12965.226877 C =15110.375502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.029 4.029 3 C -0.227 4.227 4 C -0.206 4.206 5 C -0.018 4.018 6 C -0.058 4.058 7 C 0.518 3.482 8 O -0.574 6.574 9 N -0.714 5.714 10 C 0.142 3.858 11 H 0.081 0.919 12 C -0.155 4.155 13 C 0.116 3.884 14 N -0.714 5.714 15 C 0.537 3.463 16 O -0.561 6.561 17 C -0.132 4.132 18 S -0.148 6.148 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.013 3.987 22 N -0.910 5.910 23 Si 0.998 3.002 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.275 1.275 27 O -0.195 6.195 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.165 0.835 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.133 0.867 35 H 0.418 0.582 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.412 0.588 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 29.404 -4.595 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 C -0.246 4.246 4 C -0.225 4.225 5 C -0.067 4.067 6 C -0.097 4.097 7 C 0.305 3.695 8 O -0.453 6.453 9 N -0.367 5.367 10 C 0.037 3.963 11 H 0.099 0.901 12 C -0.214 4.214 13 C -0.008 4.008 14 N -0.368 5.368 15 C 0.323 3.677 16 O -0.439 6.439 17 C -0.283 4.283 18 S 0.079 5.921 19 C -0.693 4.693 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.201 1.201 27 O -0.092 6.092 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.124 0.876 31 H 0.183 0.817 32 H 0.179 0.821 33 H 0.177 0.823 34 H 0.151 0.849 35 H 0.255 0.745 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.249 0.751 42 H 0.123 0.877 43 H 0.130 0.870 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.981 28.853 -3.173 29.855 hybrid contribution -1.707 -0.458 -1.079 2.071 sum -8.688 28.395 -4.253 29.998 Atomic orbital electron populations 1.20466 0.82989 1.04894 1.04639 1.23149 0.95484 0.83914 1.05287 1.21888 0.92760 1.00299 1.09659 1.21835 0.99054 0.93982 1.07614 1.21968 0.82973 0.94710 1.07089 1.20258 0.93803 1.01293 0.94330 1.20803 0.79321 0.77852 0.91500 1.90748 1.54364 1.52545 1.47639 1.45978 1.32471 1.49262 1.09029 1.21080 0.98504 0.93023 0.83665 0.90109 1.22051 0.99406 0.97392 1.02525 1.21735 0.94240 0.84970 0.99839 1.45728 1.22000 1.06809 1.62260 1.19978 0.86125 0.83447 0.78162 1.90706 1.23040 1.81834 1.48333 1.23383 1.02612 0.97309 1.04996 1.85546 1.27396 0.99613 1.79533 1.23229 1.04852 0.96338 1.44874 0.90017 1.26115 0.98346 0.98785 0.95942 1.70187 1.24850 1.14118 1.45549 0.84917 0.77808 0.77561 0.77739 1.18115 1.19857 1.20059 1.83919 1.17077 1.36278 1.71961 0.88619 0.90671 0.87631 0.81732 0.82114 0.82345 0.84864 0.74485 0.90594 0.92684 0.90351 0.90027 0.90376 0.75146 0.87714 0.86956 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.42 71.23 0.74 -0.07 16 2 C -0.03 -0.54 7.32 24.83 0.18 -0.36 16 3 C -0.23 -4.09 10.81 22.19 0.24 -3.85 16 4 C -0.21 -3.79 10.81 22.19 0.24 -3.55 16 5 C -0.02 -0.34 5.81 24.83 0.14 -0.19 16 6 C -0.06 -0.66 6.23 29.10 0.18 -0.48 16 7 C 0.52 8.64 7.79 87.66 0.68 9.32 16 8 O -0.57 -15.32 15.70 -3.03 -0.05 -15.37 16 9 N -0.71 -8.59 4.52 -442.53 -2.00 -10.59 16 10 C 0.14 2.11 2.73 44.99 0.12 2.24 16 11 H 0.08 1.52 7.58 -2.39 -0.02 1.50 16 12 C -0.16 -2.01 9.48 71.98 0.68 -1.32 16 13 C 0.12 2.12 5.23 86.38 0.45 2.57 16 14 N -0.71 -15.93 5.39 -463.07 -2.50 -18.42 16 15 C 0.54 18.39 7.85 87.65 0.69 19.08 16 16 O -0.56 -24.42 15.86 -3.03 -0.05 -24.47 16 17 C -0.13 -5.00 6.16 71.23 0.44 -4.56 16 18 S -0.15 -8.04 20.57 -56.49 -1.16 -9.20 16 19 C -0.55 -30.70 9.50 67.95 0.65 -30.05 16 20 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 21 C 0.01 0.73 5.49 84.86 0.47 1.19 16 22 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 23 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 27 O -0.19 -4.48 10.65 -2.51 -0.03 -4.50 16 28 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.16 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.42 3.04 8.60 -92.71 -0.80 2.24 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.41 7.29 8.14 -92.71 -0.75 6.54 16 42 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 43 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 44 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -85.54 396.67 1.92 -83.62 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.52 Total: 18.81 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 5.91 Total: -10.04 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -4.21 Total: -84.10 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.12 Total: -44.34 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.20 kcal Total: -85.54 1.92 -83.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358125478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.852 kcal (2) G-P(sol) polarization free energy of solvation -85.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds