Wall clock time and date at job start Sat Apr 11 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30864 * 125.88387 * 2 1 4 4 N 1.40068 * 108.30026 * 179.78350 * 3 2 1 5 5 C 1.46505 * 126.01843 * 180.26466 * 4 3 2 6 6 C 1.50694 * 109.47198 * 270.18404 * 5 4 3 7 7 H 1.07998 * 120.00260 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99703 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99861 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47068 * 89.99941 * 10 8 6 12 12 H 1.48504 * 109.46628 * 209.99560 * 10 8 6 13 13 H 1.48491 * 109.47191 * 329.99563 * 10 8 6 14 14 C 1.35236 * 107.96420 * 0.42269 * 4 3 2 15 15 C 1.50703 * 126.16413 * 179.84959 * 14 4 3 16 16 C 1.35641 * 107.67223 * 359.58206 * 14 4 3 17 17 O 1.36183 * 126.08187 * 180.29570 * 16 14 4 18 18 C 1.34194 * 116.99843 * 90.00381 * 17 16 14 19 19 O 1.21216 * 119.99792 * 359.97438 * 18 17 16 20 20 C 1.50704 * 120.00406 * 179.97438 * 18 17 16 21 21 C 1.50692 * 109.47246 * 180.02562 * 20 18 17 22 22 C 1.38698 * 120.31181 * 89.99933 * 21 20 18 23 23 C 1.38491 * 118.50845 * 179.97438 * 22 21 20 24 24 C 1.39447 * 119.05074 * 0.02562 * 23 22 21 25 25 C 1.43206 * 119.73494 * 179.97438 * 24 23 22 26 26 N 9.99824 * 80.60301 * 127.70178 * 14 1 2 27 27 N 1.32791 * 120.53199 * 0.02562 * 24 23 22 28 28 C 1.31591 * 121.61083 * 359.66057 * 27 24 23 29 29 H 1.09001 * 109.46895 * 269.95846 * 1 2 3 30 30 H 1.08997 * 109.47706 * 29.95761 * 1 2 3 31 31 H 1.09003 * 109.47189 * 149.95410 * 1 2 3 32 32 H 1.09005 * 109.46438 * 30.18138 * 5 4 3 33 33 H 1.08995 * 109.46762 * 150.17665 * 5 4 3 34 34 H 0.96998 * 119.99598 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47152 * 269.71183 * 15 14 4 36 36 H 1.09001 * 109.46980 * 149.71284 * 15 14 4 37 37 H 1.09004 * 109.47113 * 29.71265 * 15 14 4 38 38 H 1.08994 * 109.46704 * 300.00610 * 20 18 17 39 39 H 1.09000 * 109.46790 * 60.00143 * 20 18 17 40 40 H 1.07995 * 120.74467 * 0.02954 * 22 21 20 41 41 H 1.08003 * 120.47185 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.54075 * 180.31005 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0603 0.0000 4 7 3.6093 0.6371 0.0050 5 6 4.7885 1.5065 0.0122 6 6 5.1965 1.8113 -1.4061 7 1 4.6340 1.3985 -2.2304 8 6 6.2886 2.6165 -1.6514 9 7 6.9739 3.1189 -0.6475 10 14 6.7947 2.9939 -3.4095 11 1 6.0984 4.2210 -3.8725 12 1 8.2633 3.2065 -3.4669 13 1 6.4249 1.8541 -4.2865 14 6 3.6183 -0.7152 -0.0014 15 6 4.8409 -1.5964 -0.0024 16 6 2.3287 -1.1356 -0.0009 17 8 1.9073 -2.4305 -0.0005 18 6 1.7191 -3.0096 1.1953 19 8 1.9243 -2.3818 2.2117 20 6 1.2529 -4.4405 1.2747 21 6 1.1207 -4.8463 2.7200 22 6 -0.0792 -4.6638 3.3914 23 6 -0.1593 -5.0506 4.7187 24 6 0.9634 -5.6066 5.3310 25 6 0.8970 -6.0112 6.7031 26 7 0.8471 -6.3323 7.7917 27 7 2.0940 -5.7631 4.6522 28 6 2.1944 -5.4095 3.3887 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3634 0.8903 -0.5131 31 1 -0.3634 -0.8896 -0.5146 32 1 4.5514 2.4360 0.5299 33 1 5.6077 1.0033 0.5258 34 1 7.7419 3.6856 -0.8201 35 1 5.1354 -1.8081 -1.0303 36 1 4.6154 -2.5312 0.5108 37 1 5.6562 -1.0872 0.5116 38 1 0.2858 -4.5354 0.7811 39 1 1.9781 -5.0869 0.7803 40 1 -0.9320 -4.2307 2.8900 41 1 -1.0782 -4.9234 5.2718 42 1 3.1287 -5.5565 2.8673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361558631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:39 Heat of formation + Delta-G solvation = 60.453713 kcal Electronic energy + Delta-G solvation = -27862.828406 eV Core-core repulsion = 23810.423099 eV Total energy + Delta-G solvation = -4052.405307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.41806 -40.88678 -39.72798 -37.07178 -36.57638 -34.17746 -34.06626 -32.65563 -32.64674 -30.95957 -29.34095 -29.15213 -26.56371 -26.04954 -24.62253 -24.11294 -22.89483 -21.56217 -19.90634 -19.56866 -19.28851 -17.68362 -17.36626 -17.05029 -16.69387 -16.02139 -15.64619 -15.29981 -15.20259 -15.03442 -14.57196 -14.33634 -13.85633 -13.61606 -13.49848 -13.47649 -13.18853 -13.07050 -13.04474 -12.91653 -12.70738 -12.56712 -12.33439 -12.13081 -12.00391 -11.78288 -11.61310 -11.10803 -11.03471 -10.86414 -10.62414 -10.39470 -10.34138 -10.14159 -9.85315 -9.81360 -9.52846 -8.72496 -8.44856 -7.78836 -6.34447 -4.42778 0.04124 0.72169 2.13469 2.16644 2.17493 2.43580 2.68818 3.09904 3.16711 3.19573 3.23429 3.28730 3.39757 3.61034 3.97970 4.13143 4.22508 4.32563 4.42227 4.56076 4.82358 4.89549 5.00307 5.04826 5.08311 5.16702 5.26474 5.38234 5.48086 5.61111 5.64921 5.80484 5.87754 5.96911 6.01244 6.04248 6.19641 6.40957 6.53716 6.86416 6.92099 6.95521 7.16916 7.27076 7.54294 7.74640 7.76695 8.04127 8.36123 8.62926 9.24047 10.73382 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.002269 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.631334 B =12335.471103 C =12859.124744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.059 3.941 3 N -0.280 5.280 4 N -0.312 5.312 5 C 0.257 3.743 6 C -0.540 4.540 7 H 0.066 0.934 8 C 0.067 3.933 9 N -0.889 5.889 10 Si 0.908 3.092 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.106 3.894 15 C -0.085 4.085 16 C -0.107 4.107 17 O -0.249 6.249 18 C 0.437 3.563 19 O -0.486 6.486 20 C -0.072 4.072 21 C -0.098 4.098 22 C -0.056 4.056 23 C -0.116 4.116 24 C 0.189 3.811 25 C 0.268 3.732 26 N -0.391 5.391 27 N -0.448 5.448 28 C 0.128 3.872 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.269 0.731 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.703 -18.277 2.800 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 N -0.104 5.104 4 N -0.092 5.092 5 C 0.140 3.860 6 C -0.579 4.579 7 H 0.084 0.916 8 C -0.137 4.137 9 N -0.527 5.527 10 Si 0.735 3.265 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.196 1.196 14 C -0.027 4.027 15 C -0.143 4.143 16 C -0.160 4.160 17 O -0.161 6.161 18 C 0.279 3.721 19 O -0.372 6.372 20 C -0.110 4.110 21 C -0.101 4.101 22 C -0.082 4.082 23 C -0.138 4.138 24 C 0.051 3.949 25 C -0.049 4.049 26 N -0.067 5.067 27 N -0.158 5.158 28 C -0.032 4.032 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.645 -17.418 5.291 22.164 hybrid contribution -0.180 0.136 -1.677 1.692 sum -12.825 -17.282 3.614 21.822 Atomic orbital electron populations 1.20062 0.87264 1.02930 1.02266 1.22256 0.96820 0.89906 1.01663 1.77400 0.87338 1.21643 1.24009 1.49201 1.06119 1.03716 1.50152 1.19821 0.77481 0.89376 0.99341 1.21269 1.13419 1.32108 0.91062 0.91608 1.24939 0.95605 0.94911 0.98278 1.69917 1.19126 1.32647 1.30994 0.86317 0.77698 0.79039 0.83427 1.20240 1.20817 1.19600 1.20899 0.95861 0.86485 0.99503 1.20359 0.93416 0.96953 1.03580 1.17561 0.90565 0.81814 1.26103 1.84687 1.76450 1.24133 1.30798 1.24175 0.75272 0.89485 0.83175 1.90824 1.45602 1.64583 1.36155 1.20240 1.06000 0.91064 0.93693 1.20610 0.95033 0.98299 0.96114 1.21482 0.97873 0.95265 0.93531 1.21993 0.98887 0.97469 0.95487 1.16361 0.91303 0.99845 0.87398 1.25015 0.93916 0.94029 0.91939 1.81263 1.06863 1.07437 1.11176 1.67574 1.24048 1.15618 1.08557 1.22691 0.98240 0.93332 0.88914 0.91227 0.90813 0.90989 0.92492 0.92663 0.92101 0.89631 0.91261 0.90246 0.85944 0.85789 0.83313 0.83406 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.44 36.01 0.38 -0.54 16 2 C 0.06 1.13 7.23 -82.28 -0.59 0.53 16 3 N -0.28 -6.31 12.57 33.73 0.42 -5.88 16 4 N -0.31 -7.16 3.60 -58.16 -0.21 -7.37 16 5 C 0.26 6.42 6.00 -5.19 -0.03 6.38 16 6 C -0.54 -14.40 9.39 -34.44 -0.32 -14.72 16 7 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 8 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -24.47 13.29 55.43 0.74 -23.73 16 10 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 C 0.11 2.11 6.95 -82.02 -0.57 1.54 16 15 C -0.08 -1.36 10.09 36.01 0.36 -1.00 16 16 C -0.11 -1.96 5.34 -39.79 -0.21 -2.17 16 17 O -0.25 -3.56 10.13 -24.24 -0.25 -3.80 16 18 C 0.44 5.20 7.90 36.01 0.28 5.49 16 19 O -0.49 -7.76 15.80 -19.06 -0.30 -8.07 16 20 C -0.07 -0.42 5.96 -29.04 -0.17 -0.59 16 21 C -0.10 -0.67 4.40 -104.37 -0.46 -1.13 16 22 C -0.06 -0.33 9.84 -39.32 -0.39 -0.72 16 23 C -0.12 -0.74 9.80 -39.04 -0.38 -1.12 16 24 C 0.19 1.70 6.58 -85.07 -0.56 1.14 16 25 C 0.27 2.78 15.53 -22.47 -0.35 2.43 16 26 N -0.39 -4.77 18.54 41.84 0.78 -3.99 16 27 N -0.45 -4.47 10.28 -11.16 -0.11 -4.59 16 28 C 0.13 1.02 10.85 -17.57 -0.19 0.83 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.06 1.37 7.06 -51.93 -0.37 1.00 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.31 7.08 -51.93 -0.37 0.94 16 38 H 0.12 0.38 8.09 -51.93 -0.42 -0.04 16 39 H 0.12 0.41 8.09 -51.93 -0.42 -0.01 16 40 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 42 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -34.55 386.30 -6.37 -40.91 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.92 Total: -2.80 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -3.31 Total: -1.99 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 1.61 Total: -45.57 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.55 Total: -11.87 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.55 -6.37 -40.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361558631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.368 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds