Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30864 * 125.88387 * 2 1 4 4 N 1.40068 * 108.30026 * 179.78350 * 3 2 1 5 5 C 1.46505 * 126.01843 * 180.26466 * 4 3 2 6 6 C 1.50694 * 109.47198 * 270.18404 * 5 4 3 7 7 H 1.07998 * 120.00260 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99703 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99861 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47068 * 89.99941 * 10 8 6 12 12 H 1.48504 * 109.46628 * 209.99560 * 10 8 6 13 13 H 1.48491 * 109.47191 * 329.99563 * 10 8 6 14 14 C 1.35236 * 107.96420 * 0.42269 * 4 3 2 15 15 C 1.50703 * 126.16413 * 179.84959 * 14 4 3 16 16 C 1.35641 * 107.67223 * 359.58206 * 14 4 3 17 17 O 1.36183 * 126.08187 * 180.29570 * 16 14 4 18 18 C 1.34194 * 116.99843 * 90.00381 * 17 16 14 19 19 O 1.21216 * 119.99792 * 359.97438 * 18 17 16 20 20 C 1.50704 * 120.00406 * 179.97438 * 18 17 16 21 21 C 1.50692 * 109.47246 * 180.02562 * 20 18 17 22 22 C 1.38698 * 120.31181 * 89.99933 * 21 20 18 23 23 C 1.38491 * 118.50845 * 179.97438 * 22 21 20 24 24 C 1.39447 * 119.05074 * 0.02562 * 23 22 21 25 25 C 1.43206 * 119.73494 * 179.97438 * 24 23 22 26 26 N 9.99824 * 80.60301 * 127.70178 * 14 1 2 27 27 N 1.32791 * 120.53199 * 0.02562 * 24 23 22 28 28 C 1.31591 * 121.61083 * 359.66057 * 27 24 23 29 29 H 1.09001 * 109.46895 * 269.95846 * 1 2 3 30 30 H 1.08997 * 109.47706 * 29.95761 * 1 2 3 31 31 H 1.09003 * 109.47189 * 149.95410 * 1 2 3 32 32 H 1.09005 * 109.46438 * 30.18138 * 5 4 3 33 33 H 1.08995 * 109.46762 * 150.17665 * 5 4 3 34 34 H 0.96998 * 119.99598 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47152 * 269.71183 * 15 14 4 36 36 H 1.09001 * 109.46980 * 149.71284 * 15 14 4 37 37 H 1.09004 * 109.47113 * 29.71265 * 15 14 4 38 38 H 1.08994 * 109.46704 * 300.00610 * 20 18 17 39 39 H 1.09000 * 109.46790 * 60.00143 * 20 18 17 40 40 H 1.07995 * 120.74467 * 0.02954 * 22 21 20 41 41 H 1.08003 * 120.47185 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.54075 * 180.31005 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0603 0.0000 4 7 3.6093 0.6371 0.0050 5 6 4.7885 1.5065 0.0122 6 6 5.1965 1.8113 -1.4061 7 1 4.6340 1.3985 -2.2304 8 6 6.2886 2.6165 -1.6514 9 7 6.9739 3.1189 -0.6475 10 14 6.7947 2.9939 -3.4095 11 1 6.0984 4.2210 -3.8725 12 1 8.2633 3.2065 -3.4669 13 1 6.4249 1.8541 -4.2865 14 6 3.6183 -0.7152 -0.0014 15 6 4.8409 -1.5964 -0.0024 16 6 2.3287 -1.1356 -0.0009 17 8 1.9073 -2.4305 -0.0005 18 6 1.7191 -3.0096 1.1953 19 8 1.9243 -2.3818 2.2117 20 6 1.2529 -4.4405 1.2747 21 6 1.1207 -4.8463 2.7200 22 6 -0.0792 -4.6638 3.3914 23 6 -0.1593 -5.0506 4.7187 24 6 0.9634 -5.6066 5.3310 25 6 0.8970 -6.0112 6.7031 26 7 0.8471 -6.3323 7.7917 27 7 2.0940 -5.7631 4.6522 28 6 2.1944 -5.4095 3.3887 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3634 0.8903 -0.5131 31 1 -0.3634 -0.8896 -0.5146 32 1 4.5514 2.4360 0.5299 33 1 5.6077 1.0033 0.5258 34 1 7.7419 3.6856 -0.8201 35 1 5.1354 -1.8081 -1.0303 36 1 4.6154 -2.5312 0.5108 37 1 5.6562 -1.0872 0.5116 38 1 0.2858 -4.5354 0.7811 39 1 1.9781 -5.0869 0.7803 40 1 -0.9320 -4.2307 2.8900 41 1 -1.0782 -4.9234 5.2718 42 1 3.1287 -5.5565 2.8673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361558631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = 39.485990 kcal Electronic energy + Delta-G solvation = -27863.737635 eV Core-core repulsion = 23810.423099 eV Total energy + Delta-G solvation = -4053.314536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.68767 -41.62265 -40.84624 -37.98997 -37.60134 -35.87379 -34.79052 -34.35089 -33.18139 -32.44994 -30.66817 -30.02232 -27.88782 -27.74074 -25.44305 -24.85783 -24.38561 -22.61022 -20.87072 -20.75557 -20.49952 -18.88900 -18.79317 -18.01529 -17.90333 -17.24501 -16.59831 -16.35136 -16.21289 -15.92317 -15.85618 -15.67153 -14.83898 -14.65657 -14.52129 -14.35113 -14.28865 -14.17640 -14.10025 -13.91261 -13.82766 -13.67820 -13.40304 -13.29990 -13.25934 -13.03826 -12.86652 -12.75990 -12.68215 -12.37478 -12.25312 -11.78739 -11.60423 -11.24075 -10.91073 -10.76292 -10.69801 -10.11667 -10.04856 -9.28695 -8.36599 -6.54302 -0.55326 0.23926 0.85372 1.25028 1.26822 1.36075 1.38281 1.39620 1.50417 1.68417 1.70228 2.31302 2.34396 2.45598 2.87902 2.94701 3.47110 3.62102 3.65280 3.71455 3.87288 3.98946 4.00793 4.07319 4.22397 4.42220 4.54147 4.57141 4.65775 4.72385 4.73237 4.76341 4.80770 4.83848 4.89710 4.93363 5.04428 5.15187 5.26595 5.43595 5.49912 5.54249 5.74878 5.87833 6.09159 6.19010 6.55460 6.70775 6.82812 6.96611 7.16986 8.70643 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.002269 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.631334 B =12335.471103 C =12859.124744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.059 3.941 3 N -0.331 5.331 4 N -0.343 5.343 5 C 0.274 3.726 6 C -0.553 4.553 7 H 0.054 0.946 8 C 0.021 3.979 9 N -0.919 5.919 10 Si 0.975 3.025 11 H -0.275 1.275 12 H -0.272 1.272 13 H -0.265 1.265 14 C 0.087 3.913 15 C -0.082 4.082 16 C -0.099 4.099 17 O -0.244 6.244 18 C 0.441 3.559 19 O -0.530 6.530 20 C -0.058 4.058 21 C -0.099 4.099 22 C -0.053 4.053 23 C -0.106 4.106 24 C 0.164 3.836 25 C 0.287 3.713 26 N -0.435 5.435 27 N -0.482 5.482 28 C 0.116 3.884 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.024 0.976 33 H 0.049 0.951 34 H 0.274 0.726 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.182 0.818 41 H 0.173 0.827 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.527 -20.195 0.726 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.107 4.107 3 N -0.155 5.155 4 N -0.123 5.123 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.073 0.927 8 C -0.180 4.180 9 N -0.557 5.557 10 Si 0.798 3.202 11 H -0.201 1.201 12 H -0.197 1.197 13 H -0.189 1.189 14 C -0.045 4.045 15 C -0.140 4.140 16 C -0.153 4.153 17 O -0.156 6.156 18 C 0.286 3.714 19 O -0.417 6.417 20 C -0.095 4.095 21 C -0.102 4.102 22 C -0.078 4.078 23 C -0.129 4.129 24 C 0.027 3.973 25 C -0.030 4.030 26 N -0.112 5.112 27 N -0.192 5.192 28 C -0.044 4.044 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.182 0.818 39 H 0.175 0.825 40 H 0.200 0.800 41 H 0.191 0.809 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.488 -19.374 3.226 24.406 hybrid contribution 0.279 0.638 -1.006 1.224 sum -14.209 -18.736 2.220 23.619 Atomic orbital electron populations 1.20274 0.83631 1.04718 1.03655 1.23138 0.99003 0.89374 0.99232 1.77313 0.87578 1.23971 1.26609 1.48905 1.05760 1.04665 1.52993 1.19292 0.78402 0.88509 0.98208 1.21402 1.13698 1.32564 0.91448 0.92735 1.25795 0.95370 0.94415 1.02434 1.70012 1.19556 1.33069 1.33072 0.85298 0.77713 0.78807 0.78361 1.20055 1.19670 1.18909 1.21576 0.98012 0.85663 0.99279 1.20461 0.91736 0.97344 1.04434 1.17548 0.89815 0.83549 1.24361 1.84685 1.76391 1.21905 1.32579 1.25256 0.73650 0.91122 0.81401 1.90836 1.47627 1.66017 1.37268 1.20465 1.08862 0.86615 0.93574 1.20786 0.95003 0.97726 0.96691 1.21941 0.98632 0.94116 0.93154 1.22292 0.98783 0.95811 0.95968 1.16500 0.92388 1.01636 0.86785 1.25352 0.92646 0.92822 0.92165 1.81263 1.08309 1.09188 1.12444 1.67490 1.24948 1.16956 1.09787 1.23055 0.99462 0.93431 0.88445 0.89844 0.90379 0.87853 0.95783 0.93314 0.91692 0.88633 0.88294 0.91478 0.81814 0.82469 0.80029 0.80929 0.79866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.61 10.44 71.24 0.74 -0.87 16 2 C 0.06 2.18 7.23 43.17 0.31 2.49 16 3 N -0.33 -15.30 12.57 -47.19 -0.59 -15.90 16 4 N -0.34 -16.32 3.60 -337.93 -1.22 -17.53 16 5 C 0.27 14.47 6.00 85.63 0.51 14.98 16 6 C -0.55 -30.43 9.39 25.60 0.24 -30.19 16 7 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 8 C 0.02 1.13 5.46 84.66 0.46 1.59 16 9 N -0.92 -51.67 13.29 21.45 0.28 -51.38 16 10 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 14 C 0.09 3.46 6.95 41.43 0.29 3.75 16 15 C -0.08 -2.59 10.09 71.24 0.72 -1.87 16 16 C -0.10 -3.49 5.34 22.14 0.12 -3.37 16 17 O -0.24 -6.14 10.13 2.25 0.02 -6.12 16 18 C 0.44 8.87 7.90 71.24 0.56 9.43 16 19 O -0.53 -15.74 15.80 20.76 0.33 -15.41 16 20 C -0.06 -0.37 5.96 29.10 0.17 -0.20 16 21 C -0.10 -0.98 4.40 -19.70 -0.09 -1.07 16 22 C -0.05 -0.41 9.84 22.44 0.22 -0.19 16 23 C -0.11 -1.07 9.80 22.62 0.22 -0.85 16 24 C 0.16 2.78 6.58 40.54 0.27 3.05 16 25 C 0.29 5.96 15.53 88.33 1.37 7.33 16 26 N -0.43 -10.87 18.54 19.01 0.35 -10.52 16 27 N -0.48 -9.18 10.28 -189.21 -1.94 -11.12 16 28 C 0.12 1.59 10.85 84.78 0.92 2.51 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.02 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.05 2.57 7.06 -2.39 -0.02 2.55 16 34 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.07 2.26 7.08 -2.38 -0.02 2.25 16 38 H 0.16 -0.16 8.09 -2.39 -0.02 -0.18 16 39 H 0.16 0.10 8.09 -2.39 -0.02 0.08 16 40 H 0.18 0.18 8.06 -2.91 -0.02 0.15 16 41 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 42 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -80.52 386.30 7.38 -73.14 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.07 Total: 4.15 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 7.05 Total: 6.53 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -3.12 Total: -106.45 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.35 Total: -21.53 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -80.52 7.38 -73.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361558631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.627 kcal (2) G-P(sol) polarization free energy of solvation -80.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds