Wall clock time and date at job start Sat Apr 11 2020 05:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30384 * 125.90598 * 2 1 4 4 N 1.39900 * 109.16634 * 179.79691 * 3 2 1 5 5 C 1.46494 * 125.77408 * 180.27243 * 4 3 2 6 6 C 1.34902 * 108.46031 * 0.39550 * 4 3 2 7 7 N 1.38657 * 126.42905 * 179.87641 * 6 4 3 8 8 C 1.34776 * 120.00101 * 330.05421 * 7 6 4 9 9 O 1.21281 * 119.99568 * 354.14031 * 8 7 6 10 10 C 1.50693 * 120.00206 * 173.87021 * 8 7 6 11 11 C 1.50704 * 109.47376 * 179.97438 * 10 8 7 12 12 C 1.38302 * 119.92831 * 269.72889 * 11 10 8 13 13 C 1.38105 * 120.06300 * 179.72401 * 12 11 10 14 14 C 1.38880 * 119.93325 * 0.56644 * 13 12 11 15 15 O 1.35753 * 120.06754 * 179.68492 * 14 13 12 16 16 C 1.34830 * 116.99710 * 174.40005 * 15 14 13 17 17 H 1.07999 * 120.00178 * 5.05454 * 16 15 14 18 18 C 1.38652 * 119.99800 * 185.05956 * 16 15 14 19 19 N 1.31559 * 120.00305 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99810 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47233 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47130 * 119.99623 * 20 18 16 23 23 H 1.48502 * 109.47019 * 239.99870 * 20 18 16 24 24 C 1.38877 * 119.85834 * 359.70452 * 14 13 12 25 25 C 1.38093 * 119.93461 * 0.02562 * 24 14 13 26 26 C 1.39081 * 107.14848 * 359.61883 * 6 4 3 27 27 C 1.43196 * 126.48509 * 180.24375 * 26 6 4 28 28 N 3.59298 * 90.82588 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47588 * 269.95636 * 1 2 3 30 30 H 1.09001 * 109.47008 * 29.96274 * 1 2 3 31 31 H 1.09001 * 109.47272 * 149.95751 * 1 2 3 32 32 H 1.09003 * 109.47237 * 273.71529 * 5 4 3 33 33 H 1.08996 * 109.47444 * 33.71385 * 5 4 3 34 34 H 1.09001 * 109.47642 * 153.71728 * 5 4 3 35 35 H 0.97001 * 120.00405 * 150.04529 * 7 6 4 36 36 H 1.09005 * 109.47378 * 299.99394 * 10 8 7 37 37 H 1.08997 * 109.47214 * 59.99866 * 10 8 7 38 38 H 1.07994 * 119.96684 * 359.97264 * 12 11 10 39 39 H 1.08005 * 120.03156 * 180.27129 * 13 12 11 40 40 H 0.96997 * 119.99678 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.02818 * 179.97438 * 24 14 13 42 42 H 1.08007 * 119.96666 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2716 1.0561 0.0000 4 7 3.6113 0.6531 0.0047 5 6 4.7738 1.5447 0.0118 6 6 3.6519 -0.6953 -0.0012 7 7 4.7917 -1.4847 -0.0017 8 6 5.9232 -1.0345 -0.5792 9 8 5.9165 0.0131 -1.1904 10 6 7.1978 -1.8295 -0.4605 11 6 8.3060 -1.1139 -1.1892 12 6 8.5403 -1.3840 -2.5252 13 6 9.5514 -0.7257 -3.1971 14 6 10.3409 0.1997 -2.5269 15 8 11.3396 0.8437 -3.1832 16 6 11.9914 1.8115 -2.5076 17 1 11.7666 1.9882 -1.4661 18 6 12.9500 2.5801 -3.1500 19 7 13.2241 2.3647 -4.4186 20 14 13.8535 3.9206 -2.2138 21 1 13.3657 3.9601 -0.8118 22 1 15.3108 3.6349 -2.2234 23 1 13.6020 5.2327 -2.8621 24 6 10.1066 0.4645 -1.1839 25 6 9.0904 -0.1929 -0.5190 26 6 2.3358 -1.1451 -0.0008 27 6 1.9025 -2.5099 -0.0011 28 7 1.5588 -3.5926 -0.0016 29 1 -0.3634 -0.0008 1.0277 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3634 -0.8896 -0.5145 32 1 5.0259 1.8212 -1.0120 33 1 4.5395 2.4427 0.5834 34 1 5.6209 1.0336 0.4692 35 1 4.7750 -2.3611 0.4138 36 1 7.4634 -1.9353 0.5914 37 1 7.0527 -2.8164 -0.8997 38 1 7.9294 -2.1075 -3.0444 39 1 9.7311 -0.9338 -4.2416 40 1 13.8951 2.9021 -4.8678 41 1 10.7191 1.1833 -0.6599 42 1 8.9075 0.0130 0.5254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361668230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:43 Heat of formation + Delta-G solvation = 82.316377 kcal Electronic energy + Delta-G solvation = -27798.331539 eV Core-core repulsion = 23746.874268 eV Total energy + Delta-G solvation = -4051.457271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -42.17708 -40.13168 -38.96650 -36.72397 -36.67563 -35.47063 -34.12292 -32.59099 -31.67319 -30.29364 -30.24270 -29.60833 -26.97367 -26.18494 -25.27452 -22.93152 -22.14304 -22.05551 -20.59923 -19.84261 -18.95193 -18.08165 -17.71890 -17.32755 -17.02913 -16.40887 -15.60417 -15.25610 -14.82523 -14.61670 -14.51313 -14.27948 -13.91771 -13.80803 -13.67235 -13.53697 -13.44933 -13.32553 -13.03529 -12.82920 -12.76797 -12.73290 -12.64015 -12.32842 -11.94327 -11.65313 -11.36889 -11.28647 -10.99481 -10.92168 -10.83193 -10.70720 -10.48209 -10.14558 -9.41799 -9.27466 -8.90507 -8.65849 -8.27371 -7.29247 -6.52047 -4.10896 0.98073 1.71648 1.79848 2.07544 2.13791 2.25007 2.45825 2.63277 3.07639 3.09308 3.14744 3.30679 3.75147 3.90501 4.23267 4.38489 4.44181 4.63580 4.87760 4.95182 4.99009 5.02855 5.10275 5.16585 5.20334 5.24799 5.27491 5.43231 5.49867 5.54592 5.57426 5.62331 5.72446 6.06727 6.11220 6.30095 6.45175 6.57316 6.67234 6.80368 6.95903 7.12828 7.23536 7.28509 7.35490 7.40391 7.61157 7.71850 7.92647 8.93428 9.62368 10.65728 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.002214 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.069473 B =12644.527504 C =13434.757788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.138 3.862 3 N -0.282 5.282 4 N -0.344 5.344 5 C 0.111 3.889 6 C 0.387 3.613 7 N -0.656 5.656 8 C 0.502 3.498 9 O -0.486 6.486 10 C -0.074 4.074 11 C -0.181 4.181 12 C -0.056 4.056 13 C -0.191 4.191 14 C 0.159 3.841 15 O -0.175 6.175 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.233 4.233 25 C -0.054 4.054 26 C -0.227 4.227 27 C 0.297 3.703 28 N -0.439 5.439 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.427 0.573 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.270 0.730 41 H 0.127 0.873 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.334 -5.727 12.046 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.031 4.031 3 N -0.104 5.104 4 N -0.125 5.125 5 C -0.028 4.028 6 C 0.156 3.844 7 N -0.308 5.308 8 C 0.291 3.709 9 O -0.356 6.356 10 C -0.113 4.113 11 C -0.183 4.183 12 C -0.074 4.074 13 C -0.210 4.210 14 C 0.105 3.895 15 O -0.078 6.078 16 C -0.468 4.468 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.252 4.252 25 C -0.073 4.073 26 C -0.246 4.246 27 C -0.018 4.018 28 N -0.117 5.117 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.266 0.734 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.145 0.855 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.297 -5.132 11.172 22.044 hybrid contribution 0.752 -0.142 0.657 1.009 sum -17.544 -5.275 11.829 21.807 Atomic orbital electron populations 1.20303 0.85582 1.04050 1.03739 1.22180 0.96941 0.88047 0.95956 1.77285 0.84823 1.21386 1.26878 1.48468 1.06782 1.02531 1.54752 1.22352 0.82405 0.92606 1.05449 1.17981 0.87046 0.83633 0.95774 1.43279 1.08518 1.20586 1.58445 1.21746 0.84352 0.86727 0.78070 1.90862 1.84855 1.22303 1.37561 1.20412 0.89253 0.98800 1.02849 1.18520 1.00268 1.04634 0.94852 1.20409 0.96039 0.97872 0.93110 1.20174 0.99042 1.01733 1.00095 1.19404 0.87762 0.91511 0.90843 1.83981 1.39263 1.44568 1.39980 1.21382 1.18852 1.11002 0.95579 0.88936 1.25316 0.97014 0.98242 0.95971 1.70047 1.31142 1.38783 1.09467 0.85638 0.79037 0.79607 0.79086 1.19079 1.20094 1.20077 1.21101 1.02845 1.06135 0.95148 1.20485 0.94313 0.94463 0.98010 1.15307 0.89921 0.87450 1.31937 1.24333 0.93985 0.91140 0.92299 1.81292 1.07049 1.10918 1.12423 0.89643 0.89801 0.90223 0.88012 0.89956 0.89316 0.73363 0.88092 0.88033 0.87308 0.86468 0.91966 0.85498 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.26 36.00 0.37 -0.12 16 2 C 0.14 1.35 7.26 -82.02 -0.60 0.76 16 3 N -0.28 -3.24 12.48 33.90 0.42 -2.81 16 4 N -0.34 -3.91 3.95 -66.69 -0.26 -4.17 16 5 C 0.11 1.18 9.22 59.84 0.55 1.73 16 6 C 0.39 4.02 7.34 -153.19 -1.12 2.89 16 7 N -0.66 -5.48 5.33 -11.04 -0.06 -5.54 16 8 C 0.50 5.26 6.76 -10.99 -0.07 5.18 16 9 O -0.49 -6.82 11.10 5.56 0.06 -6.76 16 10 C -0.07 -0.69 5.83 -29.04 -0.17 -0.86 16 11 C -0.18 -2.67 4.38 -104.57 -0.46 -3.12 16 12 C -0.06 -0.92 9.69 -39.61 -0.38 -1.31 16 13 C -0.19 -3.88 9.99 -39.39 -0.39 -4.27 16 14 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 15 O -0.18 -4.87 9.76 0.04 0.00 -4.87 16 16 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 17 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -24.77 13.67 55.48 0.76 -24.01 16 20 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 C -0.23 -4.75 9.17 -39.40 -0.36 -5.11 16 25 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 26 C -0.23 -2.29 6.00 -106.47 -0.64 -2.93 16 27 C 0.30 3.11 15.44 -22.48 -0.35 2.76 16 28 N -0.44 -5.29 18.54 41.83 0.78 -4.52 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.46 7.98 -51.93 -0.41 0.04 16 32 H 0.10 1.26 6.95 -51.93 -0.36 0.90 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.91 6.05 -51.93 -0.31 0.60 16 35 H 0.43 2.29 8.83 -40.82 -0.36 1.93 16 36 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 39 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.13 2.61 5.64 -52.48 -0.30 2.31 16 42 H 0.10 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -33.64 372.08 -6.32 -39.96 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.53 Total: 3.77 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -4.07 Total: -11.65 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 1.64 Total: -41.06 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.06 Total: -11.63 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.64 -6.32 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361668230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.280 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds