Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41388 * 126.80336 * 2 1 4 4 C 1.35445 * 103.98599 * 180.09415 * 3 2 1 5 5 C 1.50697 * 126.77204 * 179.90878 * 4 3 2 6 6 H 1.09000 * 109.87660 * 340.14564 * 5 4 3 7 7 C 1.54330 * 109.88336 * 101.16694 * 5 4 3 8 8 C 1.55156 * 103.09966 * 97.28749 * 7 5 4 9 9 C 1.55386 * 101.37067 * 35.49599 * 8 7 5 10 10 N 1.47031 * 110.01015 * 219.05021 * 5 4 3 11 11 S 1.65596 * 125.64649 * 59.41518 * 10 5 4 12 12 O 1.42102 * 104.27617 * 206.06940 * 11 10 5 13 13 O 1.42092 * 104.27930 * 333.93311 * 11 10 5 14 14 C 1.81402 * 104.44759 * 90.00526 * 11 10 5 15 15 C 1.53002 * 109.47017 * 173.97977 * 14 11 10 16 16 C 1.50703 * 115.54822 * 65.20023 * 15 14 11 17 17 H 1.08002 * 119.99910 * 264.78156 * 16 15 14 18 18 C 1.37871 * 120.00225 * 84.78448 * 16 15 14 19 19 N 1.31515 * 120.00394 * 352.22626 * 18 16 15 20 20 Si 1.86805 * 119.99907 * 172.22982 * 18 16 15 21 21 H 1.48502 * 109.47193 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47454 * 119.99982 * 20 18 16 23 23 H 1.48504 * 109.46846 * 239.99654 * 20 18 16 24 24 C 1.52994 * 117.49981 * 279.52358 * 15 14 11 25 25 C 1.52997 * 117.49751 * 210.86594 * 15 14 11 26 26 O 1.34035 * 106.44953 * 359.64767 * 4 3 2 27 27 N 1.20928 * 111.56710 * 0.24184 * 26 4 3 28 28 H 1.08994 * 109.47069 * 270.28993 * 1 2 3 29 29 H 1.09002 * 109.47330 * 30.29501 * 1 2 3 30 30 H 1.09003 * 109.47197 * 150.29182 * 1 2 3 31 31 H 1.07998 * 128.00080 * 0.02562 * 3 2 1 32 32 H 1.08996 * 110.71712 * 215.74257 * 7 5 4 33 33 H 1.08993 * 110.71719 * 338.83771 * 7 5 4 34 34 H 1.09004 * 111.00308 * 153.67082 * 8 7 5 35 35 H 1.08997 * 111.00322 * 277.51380 * 8 7 5 36 36 H 1.08999 * 110.34429 * 204.16158 * 9 8 7 37 37 H 1.09004 * 110.34698 * 81.86717 * 9 8 7 38 38 H 1.09002 * 109.46726 * 293.97897 * 14 11 10 39 39 H 1.08996 * 109.47480 * 53.97721 * 14 11 10 40 40 H 0.97002 * 120.00522 * 185.02447 * 19 18 16 41 41 H 1.09004 * 117.49706 * 0.02562 * 24 15 14 42 42 H 1.09006 * 117.49834 * 145.01911 * 24 15 14 43 43 H 1.09004 * 117.49841 * 214.97996 * 25 15 14 44 44 H 1.08996 * 117.50209 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6068 -0.0022 5 6 4.9021 1.3697 -0.0050 6 1 4.7330 2.3886 -0.3534 7 6 5.4998 1.3936 1.4176 8 6 6.5288 0.2328 1.3864 9 6 7.0562 0.3302 -0.0720 10 7 5.8774 0.6986 -0.8770 11 16 5.6834 0.4045 -2.4950 12 8 6.5024 -0.7294 -2.7458 13 8 4.2750 0.3450 -2.6740 14 6 6.3668 1.8754 -3.3075 15 6 6.3823 1.6604 -4.8223 16 6 5.0297 1.5326 -5.4745 17 1 4.6064 0.5551 -5.6528 18 6 4.3327 2.6634 -5.8435 19 7 4.7731 3.8516 -5.4915 20 14 2.7625 2.5080 -6.8436 21 1 2.4847 1.0735 -7.1091 22 1 1.6315 3.0994 -6.0845 23 1 2.9235 3.2274 -8.1327 24 6 7.5294 0.8338 -5.4068 25 6 7.4900 2.3487 -5.6222 26 8 3.4538 -0.7252 0.0046 27 7 2.2868 -1.0423 0.0057 28 1 -0.3633 0.0052 1.0276 29 1 -0.3634 0.8873 -0.5184 30 1 -0.3634 -0.8926 -0.5093 31 1 2.0709 2.1743 0.0004 32 1 5.9965 2.3443 1.6112 33 1 4.7278 1.2047 2.1634 34 1 7.3292 0.4008 2.1069 35 1 6.0414 -0.7261 1.5627 36 1 7.4519 -0.6321 -0.3969 37 1 7.8229 1.1014 -0.1470 38 1 5.7493 2.7416 -3.0698 39 1 7.3837 2.0461 -2.9544 40 1 4.2460 4.6420 -5.6875 41 1 8.2728 0.4428 -4.7121 42 1 7.3059 0.1977 -6.2633 43 1 7.2407 2.7088 -6.6204 44 1 8.2075 2.9551 -5.0694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364758336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -4.924540 kcal Electronic energy + Delta-G solvation = -29290.580756 eV Core-core repulsion = 25338.491635 eV Total energy + Delta-G solvation = -3952.089121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.80510 -39.61608 -38.60049 -38.01300 -36.80705 -35.67095 -34.12151 -33.32986 -31.91232 -29.88674 -29.57608 -29.28307 -27.53103 -24.16253 -23.90455 -23.02324 -22.44805 -21.58004 -21.09839 -19.73934 -18.80838 -18.59912 -18.39217 -17.84485 -17.08276 -16.84631 -16.66545 -16.35149 -15.68775 -15.28212 -15.19867 -14.94987 -14.62404 -14.21524 -14.13380 -13.96251 -13.84360 -13.72393 -13.69044 -13.34715 -13.17082 -13.00529 -12.94084 -12.89269 -12.71672 -12.50122 -12.41468 -12.25520 -12.13894 -11.97710 -11.92807 -11.64659 -11.57364 -10.91535 -10.88122 -10.58747 -10.38484 -10.19468 -9.81222 -8.23327 -6.37142 -0.64180 0.55610 1.32025 1.33192 1.35487 1.46712 1.86074 2.23925 2.35920 2.98727 3.03382 3.18621 3.35113 3.36270 3.45246 3.57288 3.79507 3.97519 4.04081 4.17284 4.27250 4.33472 4.39997 4.46569 4.49964 4.55727 4.62678 4.67570 4.79325 4.81865 4.86603 4.91855 4.94441 4.95506 5.03141 5.06277 5.17821 5.18190 5.28841 5.35327 5.42452 5.52082 5.56022 5.68177 6.19041 6.67940 7.34876 7.35342 8.84039 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.005519 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.032338 B = 5072.302513 C = 6734.260467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.007 3.993 3 C -0.232 4.232 4 C -0.034 4.034 5 C 0.220 3.780 6 H 0.126 0.874 7 C -0.109 4.109 8 C -0.122 4.122 9 C 0.098 3.902 10 N -1.014 6.014 11 S 2.625 3.375 12 O -0.993 6.993 13 O -0.981 6.981 14 C -0.545 4.545 15 C 0.008 3.992 16 C -0.533 4.533 17 H 0.041 0.959 18 C 0.048 3.952 19 N -0.888 5.888 20 Si 0.931 3.069 21 H -0.280 1.280 22 H -0.273 1.273 23 H -0.268 1.268 24 C -0.200 4.200 25 C -0.133 4.133 26 O 0.079 5.921 27 N -0.407 5.407 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.198 0.802 32 H 0.125 0.875 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.267 0.733 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.080 1.553 18.042 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.151 4.151 3 C -0.253 4.253 4 C -0.099 4.099 5 C 0.112 3.888 6 H 0.143 0.857 7 C -0.147 4.147 8 C -0.161 4.161 9 C -0.026 4.026 10 N -0.852 5.852 11 S 2.726 3.274 12 O -0.983 6.983 13 O -0.972 6.972 14 C -0.678 4.678 15 C 0.006 3.994 16 C -0.571 4.571 17 H 0.059 0.941 18 C -0.155 4.155 19 N -0.524 5.524 20 Si 0.756 3.244 21 H -0.205 1.205 22 H -0.199 1.199 23 H -0.193 1.193 24 C -0.237 4.237 25 C -0.172 4.172 26 O 0.017 5.983 27 N -0.117 5.117 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.215 0.785 32 H 0.143 0.857 33 H 0.110 0.890 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.144 0.856 39 H 0.153 0.847 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.475 -0.394 17.529 17.595 hybrid contribution -0.943 1.107 -1.246 1.915 sum 0.532 0.713 16.283 16.307 Atomic orbital electron populations 1.20302 0.83711 1.04315 1.04669 1.24236 1.00636 0.88772 1.01487 1.22738 0.90545 1.02200 1.09844 1.25373 0.99754 0.83627 1.01186 1.20348 0.80415 0.93392 0.94597 0.85683 1.22800 0.99135 1.01848 0.90949 1.22903 0.99669 0.98553 0.94975 1.22550 0.86971 1.01596 0.91434 1.58869 1.27357 1.74537 1.24435 1.04390 0.73896 0.76901 0.72235 1.93443 1.71517 1.48883 1.84507 1.93496 1.31839 1.87321 1.84508 1.29865 1.12011 1.18823 1.07066 1.18431 0.90443 1.02727 0.87845 1.20650 1.02551 0.92454 1.41413 0.94107 1.25424 0.99530 0.95009 0.95554 1.70002 1.38377 0.98061 1.45963 0.85927 0.80744 0.78141 0.79560 1.20488 1.19882 1.19319 1.23249 1.02266 0.94451 1.03776 1.22523 1.00980 0.92897 1.00815 1.84697 1.21586 1.23925 1.68075 1.73735 0.89943 1.25877 1.22116 0.87859 0.88504 0.91251 0.78501 0.85715 0.88996 0.85820 0.92050 0.91141 0.88019 0.85588 0.84679 0.92374 0.88278 0.90222 0.91463 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 10.47 71.24 0.75 -0.89 16 2 C 0.01 0.23 7.33 43.58 0.32 0.55 16 3 C -0.23 -6.80 11.06 22.40 0.25 -6.55 16 4 C -0.03 -1.07 4.36 25.04 0.11 -0.96 16 5 C 0.22 5.37 3.57 44.59 0.16 5.53 16 6 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 7 C -0.11 -1.54 6.47 31.78 0.21 -1.33 16 8 C -0.12 -1.83 7.12 32.15 0.23 -1.60 16 9 C 0.10 2.07 7.09 87.02 0.62 2.69 16 10 N -1.01 -29.94 3.34 -487.20 -1.63 -31.56 16 11 S 2.63 109.50 5.37 -56.49 -0.30 109.19 16 12 O -0.99 -45.55 17.28 -127.65 -2.21 -47.76 16 13 O -0.98 -49.21 15.69 -127.59 -2.00 -51.21 16 14 C -0.54 -22.16 6.03 71.98 0.43 -21.72 16 15 C 0.01 0.38 1.32 -52.93 -0.07 0.31 16 16 C -0.53 -29.97 8.18 25.60 0.21 -29.76 16 17 H 0.04 2.44 7.83 -2.91 -0.02 2.42 16 18 C 0.05 2.64 5.38 84.65 0.46 3.10 16 19 N -0.89 -48.12 12.98 21.45 0.28 -47.84 16 20 Si 0.93 44.41 29.55 68.60 2.03 46.44 16 21 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 C -0.20 -8.70 9.96 30.61 0.30 -8.40 16 25 C -0.13 -5.89 9.49 30.62 0.29 -5.60 16 26 O 0.08 2.99 11.17 71.67 0.80 3.79 16 27 N -0.41 -15.56 12.07 -49.54 -0.60 -16.16 16 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.20 4.32 8.06 -2.91 -0.02 4.30 16 32 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.20 7.82 -2.39 -0.02 1.18 16 34 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.70 7.67 -2.39 -0.02 1.68 16 37 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.13 5.31 8.14 -2.39 -0.02 5.29 16 39 H 0.14 4.34 8.09 -2.39 -0.02 4.32 16 40 H 0.27 13.64 8.32 -92.71 -0.77 12.87 16 41 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 42 H 0.08 3.52 8.14 -2.38 -0.02 3.50 16 43 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 44 H 0.09 3.57 8.14 -2.39 -0.02 3.56 16 Total: -1.00 -79.55 380.21 1.62 -77.92 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.99 Total: 21.83 kcal Atomic # 6 Polarization: -68.90 SS G_CDS: 4.26 Total: -64.64 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -1.95 Total: -95.56 kcal Atomic # 8 Polarization: -91.78 SS G_CDS: -3.41 Total: -95.19 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 109.50 SS G_CDS: -0.30 Total: 109.19 kcal Total: -79.55 1.62 -77.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364758336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.998 kcal (2) G-P(sol) polarization free energy of solvation -79.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds