Wall clock time and date at job start Sat Apr 11 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32432 * 118.53919 * 2 1 4 4 C 1.32318 * 121.53983 * 179.97438 * 3 2 1 5 5 O 1.35285 * 120.87651 * 180.02562 * 4 3 2 6 6 C 1.41587 * 118.25114 * 0.02562 * 4 3 2 7 7 C 1.40089 * 121.89445 * 180.02562 * 6 4 3 8 8 C 1.36075 * 119.85737 * 179.97438 * 7 6 4 9 9 C 1.40418 * 120.78588 * 359.97438 * 8 7 6 10 10 C 1.47985 * 119.71909 * 180.02562 * 9 8 7 11 11 O 1.21538 * 120.00084 * 149.70948 * 10 9 8 12 12 N 1.34783 * 119.99877 * 329.71430 * 10 9 8 13 13 C 1.46495 * 119.99718 * 6.55353 * 12 10 9 14 14 C 1.50706 * 109.46946 * 98.38817 * 13 12 10 15 15 H 1.08007 * 119.99821 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99833 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00162 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99697 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47024 * 60.00821 * 18 16 14 20 20 H 1.48504 * 109.46783 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47542 * 300.00468 * 18 16 14 22 22 C 1.46505 * 119.99820 * 186.55969 * 12 10 9 23 23 C 1.52999 * 109.47298 * 91.54983 * 22 12 10 24 24 C 1.47191 * 109.47149 * 179.97438 * 23 22 12 25 25 N 9.62387 * 119.81413 * 13.83209 * 6 1 2 26 26 C 1.38553 * 120.56672 * 0.02562 * 9 8 7 27 27 C 1.40127 * 119.36250 * 359.97438 * 26 9 8 28 28 N 1.31118 * 118.54052 * 179.73293 * 2 1 3 29 29 H 1.08994 * 109.47103 * 89.99557 * 1 2 3 30 30 H 1.09000 * 109.47194 * 209.99798 * 1 2 3 31 31 H 1.08999 * 109.46933 * 329.99474 * 1 2 3 32 32 H 0.96703 * 114.00011 * 269.97909 * 5 4 3 33 33 H 1.07994 * 120.07128 * 359.95017 * 7 6 4 34 34 H 1.07999 * 119.60233 * 179.97438 * 8 7 6 35 35 H 1.09003 * 109.47017 * 218.38114 * 13 12 10 36 36 H 1.08995 * 109.47438 * 338.38831 * 13 12 10 37 37 H 0.97000 * 120.00379 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.46368 * 211.55246 * 22 12 10 39 39 H 1.09004 * 109.47065 * 331.54562 * 22 12 10 40 40 H 1.08999 * 109.46881 * 300.00034 * 23 22 12 41 41 H 1.08998 * 109.46873 * 59.99371 * 23 22 12 42 42 H 1.07993 * 120.31829 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1397 1.1634 0.0000 4 6 3.4610 1.2327 0.0005 5 8 4.0936 2.4285 0.0010 6 6 4.1956 0.0223 0.0005 7 6 5.5964 0.0065 0.0015 8 6 6.2605 -1.1811 0.0020 9 6 5.5585 -2.3972 0.0020 10 6 6.3047 -3.6751 0.0031 11 8 5.8259 -4.6580 0.5340 12 7 7.5153 -3.7490 -0.5846 13 6 8.1559 -2.5354 -1.0973 14 6 9.1557 -2.0308 -0.0889 15 1 9.2998 -2.5614 0.8408 16 6 9.8872 -0.8925 -0.3535 17 7 9.7121 -0.2467 -1.4857 18 14 11.1260 -0.2666 0.8968 19 1 12.1572 -1.3080 1.1359 20 1 11.7754 0.9636 0.3770 21 1 10.4298 0.0425 2.1715 22 6 8.1905 -5.0431 -0.7108 23 6 7.8222 -5.6820 -2.0514 24 6 8.5011 -6.9818 -2.1784 25 7 9.0236 -8.0602 -1.9953 26 6 4.1730 -2.4109 0.0010 27 6 3.4739 -1.1965 0.0005 28 7 2.1334 -1.1518 0.0054 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 4.2781 2.7763 -0.8823 33 1 6.1480 0.9350 0.0016 34 1 7.3405 -1.1884 0.0024 35 1 8.6667 -2.7619 -2.0333 36 1 7.3989 -1.7711 -1.2722 37 1 10.2264 0.5544 -1.6718 38 1 9.2695 -4.8961 -0.6625 39 1 7.8763 -5.6977 0.1022 40 1 6.7433 -5.8289 -2.0996 41 1 8.1364 -5.0273 -2.8643 42 1 3.6371 -3.3485 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412464736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:16 Heat of formation + Delta-G solvation = 28.616370 kcal Electronic energy + Delta-G solvation = -28729.299138 eV Core-core repulsion = 24675.513260 eV Total energy + Delta-G solvation = -4053.785878 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.60452 -41.22152 -38.89522 -38.50125 -37.47043 -36.22593 -34.68706 -34.29326 -33.39807 -32.07601 -31.90560 -29.48208 -28.92405 -26.81709 -25.24088 -24.64861 -24.04540 -23.26535 -21.10148 -20.02081 -19.29045 -19.06686 -18.81951 -18.33060 -17.58265 -17.17095 -17.06336 -16.47218 -16.29689 -15.72386 -15.65095 -15.55431 -15.11057 -15.01903 -14.55952 -14.38745 -14.26650 -14.21393 -13.86804 -13.77351 -13.57500 -13.25770 -13.11546 -13.02224 -12.80101 -12.73173 -12.64614 -12.45344 -12.18276 -12.03429 -11.85984 -11.74012 -11.65231 -11.33828 -10.96100 -10.58420 -10.42141 -10.19430 -9.61122 -9.26413 -8.19008 -6.31987 -1.03752 -0.53720 0.60667 1.05298 1.34896 1.43791 1.48050 1.53283 1.57292 2.06406 2.12458 2.23135 2.45413 2.87630 2.92979 3.11812 3.11942 3.18661 3.48081 3.63789 3.82774 4.05124 4.07182 4.11979 4.25118 4.33159 4.52722 4.56155 4.73986 4.77273 4.81583 4.88182 4.91310 4.98406 5.01028 5.28818 5.30607 5.33566 5.37970 5.56317 5.68248 5.77628 5.91605 6.04022 6.44747 6.45895 6.46083 6.80017 6.98849 7.13489 7.39414 8.84183 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009042 B = 0.004079 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.869638 B = 6862.516886 C = 9452.036121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.326 3.674 3 N -0.554 5.554 4 C 0.415 3.585 5 O -0.469 6.469 6 C -0.173 4.173 7 C -0.074 4.074 8 C -0.123 4.123 9 C -0.084 4.084 10 C 0.557 3.443 11 O -0.575 6.575 12 N -0.580 5.580 13 C 0.214 3.786 14 C -0.554 4.554 15 H 0.055 0.945 16 C 0.045 3.955 17 N -0.896 5.896 18 Si 0.937 3.063 19 H -0.279 1.279 20 H -0.282 1.282 21 H -0.275 1.275 22 C 0.121 3.879 23 C -0.021 4.021 24 C 0.236 3.764 25 N -0.503 5.503 26 C -0.056 4.056 27 C 0.147 3.853 28 N -0.523 5.523 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.434 0.566 33 H 0.154 0.846 34 H 0.195 0.805 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.272 0.728 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.957 5.498 -2.774 13.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 N -0.281 5.281 4 C 0.213 3.787 5 O -0.281 6.281 6 C -0.179 4.179 7 C -0.094 4.094 8 C -0.140 4.140 9 C -0.090 4.090 10 C 0.346 3.654 11 O -0.456 6.456 12 N -0.309 5.309 13 C 0.095 3.905 14 C -0.592 4.592 15 H 0.073 0.927 16 C -0.159 4.159 17 N -0.533 5.533 18 Si 0.763 3.237 19 H -0.204 1.204 20 H -0.208 1.208 21 H -0.200 1.200 22 C -0.004 4.004 23 C -0.062 4.062 24 C -0.078 4.078 25 N -0.184 5.184 26 C -0.076 4.076 27 C 0.021 3.979 28 N -0.240 5.240 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.300 0.700 33 H 0.172 0.828 34 H 0.211 0.789 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.145 0.855 41 H 0.157 0.843 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.311 3.395 -1.773 12.893 hybrid contribution 1.959 0.868 0.119 2.146 sum -10.351 4.263 -1.654 11.316 Atomic orbital electron populations 1.20732 0.82584 1.05157 1.05308 1.23720 0.99515 0.81530 0.89423 1.67804 1.10080 1.31612 1.18589 1.19701 0.86732 0.85271 0.87008 1.84572 1.75665 1.31420 1.36414 1.19886 0.96746 0.94380 1.06885 1.20959 0.91140 0.99755 0.97542 1.23032 1.05868 0.90735 0.94345 1.20069 0.93524 0.94112 1.01290 1.18388 0.81509 0.87382 0.78153 1.90715 1.69829 1.38434 1.46661 1.47956 1.16785 1.09558 1.56587 1.20245 0.93606 0.82066 0.94581 1.21528 1.22479 1.10757 1.04439 0.92670 1.25346 0.97568 0.96489 0.96448 1.69936 1.41245 1.18650 1.23504 0.85929 0.79879 0.77829 0.80022 1.20433 1.20755 1.19999 1.21253 0.98726 0.84316 0.96105 1.19780 1.00829 0.84960 1.00664 1.32730 0.90749 0.93994 0.90334 1.84203 1.13203 1.11509 1.09437 1.20986 0.91994 0.97144 0.97463 1.18766 0.89561 0.92595 0.96940 1.68610 1.07957 1.30063 1.17364 0.87763 0.88646 0.88421 0.70030 0.82802 0.78865 0.94251 0.91154 0.91897 0.88889 0.90490 0.85506 0.84321 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.28 71.23 0.73 -0.55 16 2 C 0.33 8.41 7.62 138.76 1.06 9.47 16 3 N -0.55 -14.81 10.30 -299.81 -3.09 -17.90 16 4 C 0.41 11.02 7.89 85.45 0.67 11.69 16 5 O -0.47 -9.77 12.91 -85.71 -1.11 -10.87 16 6 C -0.17 -5.18 5.76 -21.16 -0.12 -5.30 16 7 C -0.07 -2.25 9.58 22.22 0.21 -2.03 16 8 C -0.12 -4.24 7.37 22.30 0.16 -4.07 16 9 C -0.08 -2.89 5.58 -20.09 -0.11 -3.00 16 10 C 0.56 20.06 7.45 86.83 0.65 20.70 16 11 O -0.57 -22.77 16.21 -3.83 -0.06 -22.83 16 12 N -0.58 -19.56 2.47 -829.39 -2.05 -21.60 16 13 C 0.21 8.04 4.65 85.64 0.40 8.44 16 14 C -0.55 -23.75 7.47 25.60 0.19 -23.56 16 15 H 0.06 2.48 7.81 -2.91 -0.02 2.45 16 16 C 0.05 1.99 5.34 84.65 0.45 2.44 16 17 N -0.90 -40.60 13.29 21.45 0.28 -40.32 16 18 Si 0.94 36.66 29.54 68.60 2.03 38.68 16 19 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 22 C 0.12 3.48 5.43 86.38 0.47 3.95 16 23 C -0.02 -0.46 6.03 28.79 0.17 -0.29 16 24 C 0.24 6.15 15.70 88.52 1.39 7.54 16 25 N -0.50 -16.41 19.04 21.25 0.40 -16.00 16 26 C -0.06 -1.82 9.58 22.80 0.22 -1.60 16 27 C 0.15 4.67 6.61 40.09 0.26 4.94 16 28 N -0.52 -15.59 10.32 -181.79 -1.88 -17.47 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.43 4.37 9.06 -74.06 -0.67 3.70 16 33 H 0.15 4.19 7.70 -2.91 -0.02 4.17 16 34 H 0.20 7.53 3.00 -2.91 -0.01 7.52 16 35 H 0.04 1.50 8.13 -2.39 -0.02 1.48 16 36 H 0.07 2.71 4.04 -2.52 -0.01 2.70 16 37 H 0.27 11.90 8.31 -92.71 -0.77 11.13 16 38 H 0.09 2.71 8.08 -2.39 -0.02 2.69 16 39 H 0.08 2.37 7.30 -2.38 -0.02 2.35 16 40 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.15 4.68 7.90 -2.91 -0.02 4.66 16 Total: -1.00 -60.30 369.76 1.79 -58.52 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.44 Total: 21.03 kcal Atomic # 6 Polarization: 21.95 SS G_CDS: 6.81 Total: 28.76 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -6.32 Total: -113.29 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -1.17 Total: -33.70 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.68 kcal Total: -60.30 1.79 -58.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412464736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.132 kcal (2) G-P(sol) polarization free energy of solvation -60.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds