Wall clock time and date at job start Sat Apr 11 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38301 * 119.92921 * 2 1 4 4 C 1.38095 * 120.06935 * 179.97438 * 3 2 1 5 5 C 1.38882 * 119.93032 * 0.02562 * 4 3 2 6 6 N 1.39953 * 120.07045 * 180.02562 * 5 4 3 7 7 C 1.34769 * 119.99931 * 325.18475 * 6 5 4 8 8 O 1.21595 * 120.00053 * 4.51538 * 7 6 5 9 9 N 1.34775 * 119.99995 * 184.52236 * 7 6 5 10 10 C 1.46496 * 120.00317 * 359.97438 * 9 7 6 11 11 C 1.46499 * 119.99934 * 179.97438 * 9 7 6 12 12 H 1.08996 * 109.47538 * 359.97438 * 11 9 7 13 13 C 1.53008 * 109.47172 * 119.99709 * 11 9 7 14 14 C 1.50701 * 109.47426 * 239.99678 * 11 9 7 15 15 H 1.07996 * 119.99626 * 0.02562 * 14 11 9 16 16 C 1.37872 * 120.00088 * 180.02562 * 14 11 9 17 17 N 1.31515 * 120.00159 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 119.99954 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.46866 * 59.99909 * 18 16 14 20 20 H 1.48498 * 109.47088 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47247 * 300.00214 * 18 16 14 22 22 C 1.38842 * 119.86103 * 0.27133 * 5 4 3 23 23 S 1.76207 * 120.03652 * 179.70520 * 22 5 4 24 24 C 1.81402 * 104.44734 * 294.99870 * 23 22 5 25 25 O 1.42102 * 104.27701 * 51.07261 * 23 22 5 26 26 O 1.42101 * 104.27585 * 178.93180 * 23 22 5 27 27 C 1.38134 * 119.92913 * 359.42682 * 22 5 4 28 28 H 1.09004 * 109.47136 * 90.00072 * 1 2 3 29 29 H 1.09010 * 109.47320 * 209.99637 * 1 2 3 30 30 H 1.08997 * 109.47160 * 329.99544 * 1 2 3 31 31 H 1.07998 * 119.96733 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.03711 * 179.97438 * 4 3 2 33 33 H 0.96994 * 119.99737 * 145.18064 * 6 5 4 34 34 H 1.09000 * 109.46781 * 89.99971 * 10 9 7 35 35 H 1.08996 * 109.47812 * 210.00038 * 10 9 7 36 36 H 1.09003 * 109.47092 * 330.01016 * 10 9 7 37 37 H 1.09003 * 109.46902 * 60.00077 * 13 11 9 38 38 H 1.08996 * 109.47245 * 179.97438 * 13 11 9 39 39 H 1.09001 * 109.47070 * 300.00238 * 13 11 9 40 40 H 0.97001 * 119.99635 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.46646 * 60.00497 * 24 23 22 42 42 H 1.09003 * 109.46883 * 179.97438 * 24 23 22 43 43 H 1.08993 * 109.47353 * 300.00151 * 24 23 22 44 44 H 1.08003 * 119.96578 * 180.29737 * 27 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2019 0.0005 5 6 4.2738 0.0000 0.0005 6 7 5.6733 0.0000 0.0016 7 6 6.3477 0.9586 -0.6638 8 8 5.7429 1.8693 -1.1961 9 7 7.6923 0.9076 -0.7394 10 6 8.4210 -0.1895 -0.0978 11 6 8.4253 1.9492 -1.4632 12 1 7.7201 2.6741 -1.8697 13 6 9.3876 2.6549 -0.5055 14 6 9.2067 1.3233 -2.5895 15 1 9.1615 0.2563 -2.7504 16 6 9.9793 2.1127 -3.4146 17 7 10.0348 3.4120 -3.2184 18 14 10.9474 1.3369 -4.8112 19 1 10.0130 0.6530 -5.7410 20 1 11.6905 2.3928 -5.5448 21 1 11.9076 0.3482 -4.2585 22 6 3.5782 -1.2015 -0.0057 23 16 4.4564 -2.7291 -0.0136 24 6 5.3256 -2.7432 -1.6057 25 8 5.3812 -2.6072 1.0584 26 8 3.4374 -3.7193 0.0069 27 6 2.1968 -1.1982 0.0001 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6553 2.1329 -0.0004 32 1 4.1162 2.1382 0.0001 33 1 6.1579 -0.6898 0.4813 34 1 8.5322 -1.0131 -0.8030 35 1 9.4062 0.1601 0.2108 36 1 7.8667 -0.5318 0.7761 37 1 10.0929 1.9298 -0.0993 38 1 9.9332 3.4296 -1.0441 39 1 8.8224 3.1077 0.3092 40 1 10.5781 3.9674 -3.7991 41 1 5.9980 -1.8870 -1.6601 42 1 5.9022 -3.6638 -1.6968 43 1 4.5995 -2.6871 -2.4166 44 1 1.6551 -2.1326 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413564051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:23 Heat of formation + Delta-G solvation = -57.564290 kcal Electronic energy + Delta-G solvation = -28539.773278 eV Core-core repulsion = 24585.401526 eV Total energy + Delta-G solvation = -3954.371752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.63030 -38.87820 -37.33291 -36.12661 -35.84204 -34.85929 -33.02210 -31.55357 -31.24685 -29.64731 -29.30528 -26.67867 -26.04379 -25.27314 -23.53326 -22.55076 -21.07944 -19.47139 -19.06021 -18.17664 -17.29507 -16.89638 -16.43797 -16.31929 -16.02915 -15.36185 -15.33975 -14.84407 -14.54026 -14.14005 -13.96260 -13.80727 -13.45882 -13.34878 -13.33524 -12.94752 -12.70684 -12.54510 -12.42067 -12.30385 -12.19896 -12.11786 -11.76599 -11.63832 -11.51162 -11.26216 -11.13275 -10.90530 -10.79289 -10.77543 -10.35269 -10.24382 -10.15426 -9.55808 -9.31025 -9.22622 -8.50735 -8.19067 -7.71561 -6.14838 -4.23287 -0.09587 0.79464 1.29376 2.66443 2.90637 3.22696 3.28422 3.28741 3.30410 3.54894 3.77641 4.02531 4.24195 4.38052 4.62251 4.64687 4.81390 4.89188 5.06994 5.11948 5.16598 5.36266 5.46282 5.50044 5.56083 5.59558 5.76980 5.78293 5.89616 6.06496 6.12039 6.16589 6.40015 6.48726 6.58510 6.71577 6.87799 6.95306 7.01461 7.32094 7.57901 7.67134 7.94946 8.10010 8.43195 8.75125 8.96838 9.43468 10.90460 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.003600 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.862592 B = 7775.249553 C = 8596.945560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.134 4.134 3 C -0.047 4.047 4 C -0.136 4.136 5 C 0.270 3.730 6 N -0.712 5.712 7 C 0.695 3.305 8 O -0.571 6.571 9 N -0.598 5.598 10 C 0.076 3.924 11 C 0.272 3.728 12 H 0.067 0.933 13 C -0.149 4.149 14 C -0.529 4.529 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.693 4.693 23 S 2.499 3.501 24 C -0.649 4.649 25 O -0.944 6.944 26 O -0.941 6.941 27 C -0.008 4.008 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.131 0.869 32 H 0.154 0.846 33 H 0.414 0.586 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.031 0.969 38 H 0.096 0.904 39 H 0.013 0.987 40 H 0.265 0.735 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.055 -9.848 6.643 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.135 4.135 3 C -0.066 4.066 4 C -0.157 4.157 5 C 0.171 3.829 6 N -0.367 5.367 7 C 0.397 3.603 8 O -0.448 6.448 9 N -0.332 5.332 10 C -0.068 4.068 11 C 0.172 3.828 12 H 0.085 0.915 13 C -0.208 4.208 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.784 4.784 23 S 2.680 3.320 24 C -0.800 4.800 25 O -0.940 6.940 26 O -0.938 6.938 27 C -0.027 4.027 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.172 0.828 33 H 0.256 0.744 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.114 0.886 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.197 -9.596 6.792 17.674 hybrid contribution 0.928 -0.035 -1.140 1.470 sum -12.269 -9.631 5.653 16.590 Atomic orbital electron populations 1.20741 0.90664 1.02819 1.02396 1.19940 0.96394 0.93006 1.04208 1.21267 0.93757 0.97808 0.93761 1.21561 0.94106 0.98560 1.01468 1.16976 0.81872 0.92784 0.91305 1.43741 1.04369 1.33512 1.55029 1.15980 0.82849 0.82001 0.79505 1.90879 1.67122 1.35238 1.51602 1.47702 1.02643 1.28009 1.54825 1.21668 0.98704 0.90407 0.96044 1.18975 0.90356 0.84822 0.88677 0.91536 1.22132 0.99531 1.01333 0.97756 1.21262 1.28082 0.94297 1.13165 0.92273 1.24874 0.96455 0.94810 0.97508 1.69860 1.40086 1.03880 1.38607 0.86538 0.79902 0.78847 0.81981 1.20284 1.21121 1.20191 1.29989 1.06171 1.17148 1.25053 1.05052 0.75329 0.74270 0.77350 1.30216 1.15193 1.12250 1.22314 1.93536 1.64418 1.86121 1.49951 1.93545 1.56380 1.56920 1.86958 1.20557 0.90858 0.98864 0.92441 0.91196 0.91452 0.91517 0.85120 0.82842 0.74381 0.92896 0.89790 0.92912 0.94952 0.88551 0.96813 0.92524 0.84815 0.84664 0.84545 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.00 0.36 -0.52 16 2 C -0.13 -1.51 5.88 -104.59 -0.62 -2.13 16 3 C -0.05 -0.58 9.69 -39.61 -0.38 -0.97 16 4 C -0.14 -2.09 8.70 -39.40 -0.34 -2.43 16 5 C 0.27 4.17 6.25 -83.69 -0.52 3.65 16 6 N -0.71 -11.59 3.92 -14.22 -0.06 -11.65 16 7 C 0.69 13.96 8.13 -86.93 -0.71 13.26 16 8 O -0.57 -13.23 13.09 5.28 0.07 -13.16 16 9 N -0.60 -12.22 2.75 -181.01 -0.50 -12.72 16 10 C 0.08 1.23 9.48 59.84 0.57 1.80 16 11 C 0.27 6.63 2.64 -69.08 -0.18 6.45 16 12 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 13 C -0.15 -3.42 8.95 37.16 0.33 -3.09 16 14 C -0.53 -13.70 8.37 -34.44 -0.29 -13.99 16 15 H 0.06 1.49 7.65 -52.49 -0.40 1.09 16 16 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 18 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 C -0.69 -9.21 5.59 -39.40 -0.22 -9.43 16 23 S 2.50 29.44 5.31 -107.50 -0.57 28.87 16 24 C -0.65 -6.23 10.71 101.05 1.08 -5.15 16 25 O -0.94 -13.06 15.89 -57.54 -0.91 -13.97 16 26 O -0.94 -12.54 16.74 -57.54 -0.96 -13.51 16 27 C -0.01 -0.09 9.15 -39.61 -0.36 -0.46 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.47 8.08 -51.92 -0.42 0.05 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.15 2.63 6.20 -52.49 -0.33 2.30 16 33 H 0.41 6.03 4.10 -40.82 -0.17 5.87 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.36 6.43 -51.93 -0.33 1.02 16 36 H 0.05 0.71 6.30 -51.93 -0.33 0.39 16 37 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 38 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 39 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.13 1.50 7.25 -51.92 -0.38 1.12 16 42 H 0.13 0.95 8.14 -51.92 -0.42 0.53 16 43 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.14 1.48 7.21 -52.48 -0.38 1.11 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -32.94 366.73 -9.02 -41.96 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.84 Total: 8.24 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.38 Total: -11.35 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.07 Total: -47.99 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.81 Total: -40.64 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 29.44 SS G_CDS: -0.57 Total: 28.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.94 -9.02 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413564051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.604 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds