Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38301 * 119.92921 * 2 1 4 4 C 1.38095 * 120.06935 * 179.97438 * 3 2 1 5 5 C 1.38882 * 119.93032 * 0.02562 * 4 3 2 6 6 N 1.39953 * 120.07045 * 180.02562 * 5 4 3 7 7 C 1.34769 * 119.99931 * 325.18475 * 6 5 4 8 8 O 1.21595 * 120.00053 * 4.51538 * 7 6 5 9 9 N 1.34775 * 119.99995 * 184.52236 * 7 6 5 10 10 C 1.46496 * 120.00317 * 359.97438 * 9 7 6 11 11 C 1.46499 * 119.99934 * 179.97438 * 9 7 6 12 12 H 1.08996 * 109.47538 * 359.97438 * 11 9 7 13 13 C 1.53008 * 109.47172 * 119.99709 * 11 9 7 14 14 C 1.50701 * 109.47426 * 239.99678 * 11 9 7 15 15 H 1.07996 * 119.99626 * 0.02562 * 14 11 9 16 16 C 1.37872 * 120.00088 * 180.02562 * 14 11 9 17 17 N 1.31515 * 120.00159 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 119.99954 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.46866 * 59.99909 * 18 16 14 20 20 H 1.48498 * 109.47088 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47247 * 300.00214 * 18 16 14 22 22 C 1.38842 * 119.86103 * 0.27133 * 5 4 3 23 23 S 1.76207 * 120.03652 * 179.70520 * 22 5 4 24 24 C 1.81402 * 104.44734 * 294.99870 * 23 22 5 25 25 O 1.42102 * 104.27701 * 51.07261 * 23 22 5 26 26 O 1.42101 * 104.27585 * 178.93180 * 23 22 5 27 27 C 1.38134 * 119.92913 * 359.42682 * 22 5 4 28 28 H 1.09004 * 109.47136 * 90.00072 * 1 2 3 29 29 H 1.09010 * 109.47320 * 209.99637 * 1 2 3 30 30 H 1.08997 * 109.47160 * 329.99544 * 1 2 3 31 31 H 1.07998 * 119.96733 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.03711 * 179.97438 * 4 3 2 33 33 H 0.96994 * 119.99737 * 145.18064 * 6 5 4 34 34 H 1.09000 * 109.46781 * 89.99971 * 10 9 7 35 35 H 1.08996 * 109.47812 * 210.00038 * 10 9 7 36 36 H 1.09003 * 109.47092 * 330.01016 * 10 9 7 37 37 H 1.09003 * 109.46902 * 60.00077 * 13 11 9 38 38 H 1.08996 * 109.47245 * 179.97438 * 13 11 9 39 39 H 1.09001 * 109.47070 * 300.00238 * 13 11 9 40 40 H 0.97001 * 119.99635 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.46646 * 60.00497 * 24 23 22 42 42 H 1.09003 * 109.46883 * 179.97438 * 24 23 22 43 43 H 1.08993 * 109.47353 * 300.00151 * 24 23 22 44 44 H 1.08003 * 119.96578 * 180.29737 * 27 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2019 0.0005 5 6 4.2738 0.0000 0.0005 6 7 5.6733 0.0000 0.0016 7 6 6.3477 0.9586 -0.6638 8 8 5.7429 1.8693 -1.1961 9 7 7.6923 0.9076 -0.7394 10 6 8.4210 -0.1895 -0.0978 11 6 8.4253 1.9492 -1.4632 12 1 7.7201 2.6741 -1.8697 13 6 9.3876 2.6549 -0.5055 14 6 9.2067 1.3233 -2.5895 15 1 9.1615 0.2563 -2.7504 16 6 9.9793 2.1127 -3.4146 17 7 10.0348 3.4120 -3.2184 18 14 10.9474 1.3369 -4.8112 19 1 10.0130 0.6530 -5.7410 20 1 11.6905 2.3928 -5.5448 21 1 11.9076 0.3482 -4.2585 22 6 3.5782 -1.2015 -0.0057 23 16 4.4564 -2.7291 -0.0136 24 6 5.3256 -2.7432 -1.6057 25 8 5.3812 -2.6072 1.0584 26 8 3.4374 -3.7193 0.0069 27 6 2.1968 -1.1982 0.0001 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6553 2.1329 -0.0004 32 1 4.1162 2.1382 0.0001 33 1 6.1579 -0.6898 0.4813 34 1 8.5322 -1.0131 -0.8030 35 1 9.4062 0.1601 0.2108 36 1 7.8667 -0.5318 0.7761 37 1 10.0929 1.9298 -0.0993 38 1 9.9332 3.4296 -1.0441 39 1 8.8224 3.1077 0.3092 40 1 10.5781 3.9674 -3.7991 41 1 5.9980 -1.8870 -1.6601 42 1 5.9022 -3.6638 -1.6968 43 1 4.5995 -2.6871 -2.4166 44 1 1.6551 -2.1326 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413564051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -79.269057 kcal Electronic energy + Delta-G solvation = -28540.714467 eV Core-core repulsion = 24585.401526 eV Total energy + Delta-G solvation = -3955.312941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.98148 -40.09481 -38.36352 -37.43119 -37.12518 -36.24390 -34.81789 -32.71820 -32.29623 -31.00063 -30.43653 -27.92455 -27.35078 -27.11767 -24.56743 -23.88704 -22.47793 -20.93504 -20.16687 -19.43207 -18.72161 -18.23474 -17.87223 -17.33098 -17.13293 -17.06400 -16.62856 -16.20731 -15.93341 -15.33094 -15.11294 -14.92593 -14.71259 -14.48034 -14.23437 -14.17679 -14.11182 -13.55612 -13.50074 -13.34300 -13.25690 -13.15374 -13.11074 -13.05173 -12.92291 -12.72510 -12.67215 -12.50273 -12.21370 -12.17558 -12.11299 -11.77784 -11.41065 -11.19186 -11.04145 -10.51430 -10.34888 -9.55955 -9.11968 -8.13765 -6.29920 -1.00550 -0.23788 0.23484 1.42071 1.44744 1.48576 1.53958 1.76759 1.97019 2.38769 2.43407 2.77844 2.88069 3.10138 3.15063 3.69651 3.90431 3.96574 4.05712 4.11806 4.23315 4.29575 4.36689 4.57052 4.58789 4.69842 4.83792 4.86103 4.89517 4.90587 4.95148 4.97031 5.03175 5.06021 5.20449 5.33002 5.39989 5.46664 5.50622 5.64597 5.87685 5.90483 6.08671 6.16562 6.75681 6.88186 7.32518 7.47401 8.90530 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.003600 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.862592 B = 7775.249553 C = 8596.945560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.125 4.125 3 C -0.049 4.049 4 C -0.159 4.159 5 C 0.238 3.762 6 N -0.697 5.697 7 C 0.694 3.306 8 O -0.611 6.611 9 N -0.605 5.605 10 C 0.069 3.931 11 C 0.278 3.722 12 H 0.017 0.983 13 C -0.136 4.136 14 C -0.539 4.539 15 H 0.064 0.936 16 C 0.018 3.982 17 N -0.916 5.916 18 Si 0.964 3.036 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.692 4.692 23 S 2.512 3.488 24 C -0.641 4.641 25 O -0.966 6.966 26 O -0.954 6.954 27 C -0.015 4.015 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.126 0.874 33 H 0.421 0.579 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.019 0.981 40 H 0.264 0.736 41 H 0.120 0.880 42 H 0.166 0.834 43 H 0.154 0.846 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.995 -12.380 6.479 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.127 4.127 3 C -0.068 4.068 4 C -0.181 4.181 5 C 0.141 3.859 6 N -0.352 5.352 7 C 0.396 3.604 8 O -0.491 6.491 9 N -0.339 5.339 10 C -0.073 4.073 11 C 0.176 3.824 12 H 0.035 0.965 13 C -0.195 4.195 14 C -0.578 4.578 15 H 0.083 0.917 16 C -0.182 4.182 17 N -0.555 5.555 18 Si 0.789 3.211 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.187 1.187 22 C -0.782 4.782 23 S 2.694 3.306 24 C -0.793 4.793 25 O -0.963 6.963 26 O -0.952 6.952 27 C -0.034 4.034 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.172 0.828 32 H 0.144 0.856 33 H 0.265 0.735 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.139 0.861 42 H 0.184 0.816 43 H 0.173 0.827 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.177 -12.167 6.693 19.844 hybrid contribution 1.080 0.729 -1.073 1.688 sum -13.096 -11.438 5.620 18.273 Atomic orbital electron populations 1.20850 0.87819 1.04317 1.03633 1.20377 0.98384 0.92139 1.01751 1.21541 0.92615 0.99586 0.93025 1.21506 0.95585 0.97680 1.03294 1.17142 0.81305 0.93703 0.93779 1.43387 1.04836 1.32527 1.54480 1.16062 0.82737 0.82176 0.79452 1.90851 1.67951 1.36981 1.53288 1.47534 1.02979 1.28382 1.54959 1.21932 0.98753 0.89458 0.97202 1.18555 0.89450 0.85083 0.89295 0.96519 1.21935 0.99335 1.00915 0.97286 1.21545 1.27969 0.94580 1.13692 0.91739 1.25688 0.97485 0.95199 0.99841 1.70008 1.40803 1.05147 1.39540 0.85530 0.78593 0.78091 0.78914 1.20223 1.21170 1.18738 1.30231 1.06921 1.16920 1.24084 1.04714 0.74801 0.73231 0.77871 1.30164 1.15330 1.13308 1.20525 1.93500 1.64685 1.86148 1.51976 1.93523 1.57102 1.56960 1.87593 1.20971 0.90552 1.00125 0.91728 0.89920 0.89969 0.90124 0.82827 0.85618 0.73490 0.91327 0.89612 0.90219 0.93184 0.91012 0.96149 0.92636 0.86103 0.81552 0.82746 0.81723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 71.23 0.71 -0.68 16 2 C -0.12 -2.57 5.88 -19.85 -0.12 -2.69 16 3 C -0.05 -1.19 9.69 22.25 0.22 -0.97 16 4 C -0.16 -5.09 8.70 22.39 0.19 -4.89 16 5 C 0.24 7.45 6.25 38.14 0.24 7.69 16 6 N -0.70 -22.95 3.92 -317.18 -1.24 -24.19 16 7 C 0.69 28.81 8.13 179.06 1.46 30.26 16 8 O -0.61 -30.00 13.09 -4.02 -0.05 -30.05 16 9 N -0.61 -25.09 2.75 -844.85 -2.33 -27.41 16 10 C 0.07 2.16 9.48 127.77 1.21 3.37 16 11 C 0.28 14.00 2.64 44.25 0.12 14.12 16 12 H 0.02 1.01 6.90 -2.39 -0.02 0.99 16 13 C -0.14 -6.39 8.95 71.98 0.64 -5.74 16 14 C -0.54 -28.14 8.37 25.60 0.21 -27.93 16 15 H 0.06 3.22 7.65 -2.91 -0.02 3.19 16 16 C 0.02 0.94 5.30 84.65 0.45 1.39 16 17 N -0.92 -51.35 11.32 21.45 0.24 -51.11 16 18 Si 0.96 41.62 29.54 68.60 2.03 43.65 16 19 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 22 C -0.69 -17.73 5.59 22.39 0.13 -17.60 16 23 S 2.51 54.94 5.31 -56.49 -0.30 54.64 16 24 C -0.64 -10.72 10.71 113.37 1.21 -9.50 16 25 O -0.97 -25.50 15.89 -127.65 -2.03 -27.53 16 26 O -0.95 -23.40 16.74 -127.65 -2.14 -25.54 16 27 C -0.01 -0.33 9.15 22.25 0.20 -0.12 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.84 8.08 -2.38 -0.02 0.82 16 30 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.13 4.68 6.20 -2.91 -0.02 4.66 16 33 H 0.42 12.10 4.10 -92.71 -0.38 11.72 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 2.65 6.43 -2.39 -0.02 2.63 16 36 H 0.08 2.04 6.30 -2.39 -0.02 2.02 16 37 H 0.05 2.11 6.66 -2.39 -0.02 2.10 16 38 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.12 2.50 7.25 -2.39 -0.02 2.48 16 42 H 0.17 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.17 2.93 7.21 -2.91 -0.02 2.91 16 Total: -1.00 -73.60 366.73 1.72 -71.88 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.65 Total: 28.96 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 6.88 Total: -13.29 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -3.33 Total: -102.72 kcal Atomic # 8 Polarization: -78.90 SS G_CDS: -4.22 Total: -83.12 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 54.94 SS G_CDS: -0.30 Total: 54.64 kcal Total: -73.60 1.72 -71.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413564051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.389 kcal (2) G-P(sol) polarization free energy of solvation -73.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds