Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38004 * 119.54566 * 2 1 4 4 C 1.39919 * 118.99048 * 180.22882 * 3 2 1 5 5 C 1.47925 * 120.92632 * 179.77923 * 4 3 2 6 6 N 1.30845 * 125.50434 * 179.71958 * 5 4 3 7 7 C 1.35141 * 108.52990 * 180.02562 * 6 5 4 8 8 C 1.47490 * 126.32171 * 179.97438 * 7 6 5 9 9 O 1.21602 * 119.99882 * 174.12145 * 8 7 6 10 10 N 1.34776 * 119.99703 * 354.11520 * 8 7 6 11 11 C 1.46503 * 120.00228 * 4.32043 * 10 8 7 12 12 C 1.50700 * 109.47348 * 83.55145 * 11 10 8 13 13 H 1.08006 * 120.00005 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00231 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99724 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00082 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47205 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46878 * 119.99933 * 16 14 12 19 19 H 1.48500 * 109.47077 * 240.00155 * 16 14 12 20 20 C 1.46506 * 119.99719 * 184.31228 * 10 8 7 21 21 C 1.52999 * 109.46522 * 94.91866 * 20 10 8 22 22 C 1.47206 * 109.47133 * 179.97438 * 21 20 10 23 23 N 8.88396 * 163.92494 * 310.74200 * 5 1 2 24 24 C 1.36306 * 107.35879 * 0.02562 * 7 6 5 25 25 O 1.34233 * 107.06972 * 359.97438 * 24 7 6 26 26 C 1.39966 * 118.15303 * 359.50418 * 4 3 2 27 27 C 1.37958 * 118.99287 * 0.25301 * 26 4 3 28 28 N 1.31898 * 119.54798 * 179.72703 * 2 1 3 29 29 H 1.09004 * 109.46415 * 270.28104 * 1 2 3 30 30 H 1.09001 * 109.47216 * 30.27640 * 1 2 3 31 31 H 1.08991 * 109.46918 * 150.27927 * 1 2 3 32 32 H 1.07992 * 120.50914 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.46917 * 203.54876 * 11 10 8 34 34 H 1.08996 * 109.47026 * 323.54716 * 11 10 8 35 35 H 0.97003 * 120.00028 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.46752 * 214.91241 * 20 10 8 37 37 H 1.08995 * 109.47256 * 334.92227 * 20 10 8 38 38 H 1.09002 * 109.47442 * 300.00043 * 21 20 10 39 39 H 1.09000 * 109.47526 * 60.00122 * 21 20 10 40 40 H 1.07991 * 126.46689 * 179.97438 * 24 7 6 41 41 H 1.07997 * 120.50165 * 180.26670 * 26 4 3 42 42 H 1.07999 * 119.54595 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1876 1.2006 0.0000 4 6 3.5867 1.1870 -0.0049 5 6 4.3592 2.4486 -0.0100 6 7 5.6644 2.5404 -0.0095 7 6 6.0029 3.8487 -0.0145 8 6 7.3722 4.3968 -0.0153 9 8 7.5475 5.5948 -0.1279 10 7 8.4291 3.5698 0.1089 11 6 8.2239 2.1198 0.1494 12 6 8.1171 1.5880 -1.2566 13 1 8.1948 2.2625 -2.0965 14 6 7.9202 0.2402 -1.4708 15 7 7.8261 -0.5812 -0.4481 16 14 7.7871 -0.4188 -3.2136 17 1 7.9245 0.7017 -4.1784 18 1 8.8653 -1.4120 -3.4509 19 1 6.4652 -1.0699 -3.3970 20 6 9.7833 4.1209 0.2031 21 6 10.1775 4.2558 1.6753 22 6 11.5384 4.8089 1.7702 23 7 12.5883 5.2370 1.8425 24 6 4.8453 4.5683 -0.0176 25 8 3.8332 3.6865 -0.0149 26 6 4.2352 -0.0533 0.0011 27 6 3.4756 -1.2050 0.0062 28 7 2.1575 -1.1474 0.0055 29 1 -0.3632 0.0050 1.0277 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3633 -0.8924 -0.5094 32 1 1.6485 2.1363 0.0004 33 1 9.0671 1.6474 0.6534 34 1 7.3053 1.8979 0.6926 35 1 7.6873 -1.5294 -0.5988 36 1 10.4828 3.4538 -0.3007 37 1 9.8103 5.1017 -0.2715 38 1 9.4779 4.9227 2.1792 39 1 10.1505 3.2750 2.1501 40 1 4.7587 5.6447 -0.0214 41 1 5.3137 -0.1080 0.0020 42 1 3.9666 -2.1668 0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417618409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = 64.047920 kcal Electronic energy + Delta-G solvation = -28936.166568 eV Core-core repulsion = 24883.917118 eV Total energy + Delta-G solvation = -4052.249451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.12914 -39.99423 -39.22864 -36.72254 -35.37538 -34.65382 -33.43301 -32.78884 -32.54894 -31.10167 -29.36753 -27.59365 -27.18818 -25.08773 -24.21253 -23.34024 -22.83587 -21.95274 -20.70517 -19.14920 -17.65522 -17.25883 -16.67762 -16.63972 -16.25652 -15.96247 -15.91537 -15.55063 -15.28299 -14.73739 -14.44951 -14.43092 -14.31631 -13.73238 -13.46976 -13.36778 -13.18555 -12.93709 -12.51832 -12.45525 -12.34031 -12.31827 -12.16263 -11.79024 -11.68110 -11.44882 -11.12968 -10.99090 -10.89743 -10.71352 -10.26535 -10.14680 -9.87249 -9.66560 -9.51841 -9.42226 -8.85492 -8.44895 -8.41393 -7.89750 -6.12353 -4.13139 0.70400 1.24660 1.61387 2.64527 2.68169 2.82907 2.90580 3.21909 3.31354 3.34912 3.49056 3.74115 3.94823 4.01829 4.30230 4.36083 4.37294 4.83177 4.98917 5.04541 5.11405 5.21054 5.24402 5.25121 5.29607 5.40635 5.51103 5.61241 5.67567 5.72252 5.76173 5.83403 5.92454 6.01125 6.15241 6.19870 6.33383 6.47375 6.58653 6.85263 7.33293 7.54437 7.66540 7.78963 7.85382 8.06184 8.10201 8.14427 8.65176 8.89435 9.49284 10.95237 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.003901 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.107032 B = 7175.108673 C = 8721.868083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.116 3.884 3 C -0.152 4.152 4 C 0.039 3.961 5 C 0.199 3.801 6 N -0.363 5.363 7 C -0.046 4.046 8 C 0.600 3.400 9 O -0.566 6.566 10 N -0.577 5.577 11 C 0.223 3.777 12 C -0.506 4.506 13 H 0.053 0.947 14 C 0.074 3.926 15 N -0.889 5.889 16 Si 0.879 3.121 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.123 3.877 21 C -0.045 4.045 22 C 0.221 3.779 23 N -0.449 5.449 24 C -0.001 4.001 25 O -0.196 6.196 26 C -0.121 4.121 27 C 0.104 3.896 28 N -0.480 5.480 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.261 0.739 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.229 0.771 41 H 0.178 0.822 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.602 2.788 3.784 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.022 4.022 3 C -0.173 4.173 4 C 0.030 3.970 5 C -0.005 4.005 6 N -0.091 5.091 7 C -0.169 4.169 8 C 0.388 3.612 9 O -0.448 6.448 10 N -0.306 5.306 11 C 0.104 3.896 12 C -0.545 4.545 13 H 0.071 0.929 14 C -0.128 4.128 15 N -0.529 5.529 16 Si 0.707 3.293 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.003 4.003 21 C -0.086 4.086 22 C -0.097 4.097 23 N -0.126 5.126 24 C -0.076 4.076 25 O -0.082 6.082 26 C -0.142 4.142 27 C -0.052 4.052 28 N -0.191 5.191 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.245 0.755 41 H 0.195 0.805 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.027 2.526 3.882 11.045 hybrid contribution -0.292 0.687 -1.189 1.404 sum -10.319 3.213 2.693 11.138 Atomic orbital electron populations 1.20667 0.88748 1.03333 1.02933 1.21083 0.96951 0.87831 0.96316 1.21962 0.93063 0.99944 1.02362 1.17545 0.91450 0.87804 1.00196 1.23881 0.88089 0.83718 1.04849 1.71544 1.08545 1.17507 1.11541 1.21687 0.95736 0.89252 1.10229 1.16785 0.82795 0.85059 0.76610 1.90737 1.85776 1.14870 1.53377 1.48118 1.03936 1.10282 1.68242 1.20067 0.99609 0.71316 0.98589 1.21298 1.48681 0.92678 0.91854 0.92917 1.24689 0.95191 0.96655 0.96246 1.69914 1.50148 1.03604 1.29226 0.86745 0.77819 0.79068 0.85683 1.20099 1.21009 1.20858 1.21201 0.84759 1.01370 0.92945 1.19766 0.85061 1.02753 1.01026 1.29080 0.94730 0.92923 0.92965 1.81189 1.12495 1.10110 1.08828 1.25283 0.84378 0.96037 1.01869 1.84367 1.37627 1.16688 1.69527 1.22816 1.04904 0.90546 0.95914 1.22743 0.88587 0.98757 0.95150 1.67434 1.10576 1.29241 1.11845 0.90549 0.90860 0.90504 0.84440 0.94890 0.90253 0.92951 0.89173 0.89521 0.87402 0.86776 0.75519 0.80476 0.81877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.16 36.01 0.37 -0.53 16 2 C 0.12 1.50 6.78 -82.65 -0.56 0.94 16 3 C -0.15 -2.02 9.44 -39.04 -0.37 -2.39 16 4 C 0.04 0.63 5.91 -104.65 -0.62 0.01 16 5 C 0.20 3.42 7.91 -14.01 -0.11 3.31 16 6 N -0.36 -7.02 6.81 -8.36 -0.06 -7.08 16 7 C -0.05 -0.83 6.64 -83.34 -0.55 -1.38 16 8 C 0.60 11.28 7.61 -12.49 -0.10 11.18 16 9 O -0.57 -11.00 16.38 5.28 0.09 -10.91 16 10 N -0.58 -10.63 2.47 -176.30 -0.44 -11.06 16 11 C 0.22 4.72 4.79 -5.19 -0.02 4.70 16 12 C -0.51 -12.16 8.44 -34.44 -0.29 -12.45 16 13 H 0.05 1.35 7.81 -52.48 -0.41 0.94 16 14 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -21.70 12.64 55.43 0.70 -21.00 16 16 Si 0.88 19.83 29.54 -169.99 -5.02 14.81 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C 0.12 1.86 5.42 -4.04 -0.02 1.84 16 21 C -0.04 -0.55 6.02 -29.52 -0.18 -0.72 16 22 C 0.22 3.04 15.43 -20.75 -0.32 2.72 16 23 N -0.45 -7.25 18.54 42.16 0.78 -6.47 16 24 C 0.00 -0.02 11.94 30.04 0.36 0.34 16 25 O -0.20 -2.93 10.56 5.35 0.06 -2.87 16 26 C -0.12 -2.06 9.78 -39.04 -0.38 -2.44 16 27 C 0.10 1.57 11.17 -17.61 -0.20 1.38 16 28 N -0.48 -7.07 10.25 -9.56 -0.10 -7.17 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.14 1.49 7.98 -52.49 -0.42 1.07 16 33 H 0.03 0.72 8.02 -51.93 -0.42 0.30 16 34 H 0.08 1.78 5.27 -51.93 -0.27 1.50 16 35 H 0.26 6.13 8.31 -40.82 -0.34 5.79 16 36 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 37 H 0.09 1.34 7.23 -51.93 -0.38 0.96 16 38 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.23 2.40 8.06 -52.49 -0.42 1.97 16 41 H 0.18 3.50 7.25 -52.49 -0.38 3.12 16 42 H 0.16 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 378.15 15.07 5.70 5.70 Total: -1.00 -29.17 378.15 -6.17 -35.34 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.79 Total: 2.51 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -3.09 Total: 8.21 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.89 Total: -52.78 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.14 Total: -13.79 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.17 -6.17 -35.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417618409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.390 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds