Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38004 * 119.54566 * 2 1 4 4 C 1.39919 * 118.99048 * 180.22882 * 3 2 1 5 5 C 1.47925 * 120.92632 * 179.77923 * 4 3 2 6 6 N 1.30845 * 125.50434 * 179.71958 * 5 4 3 7 7 C 1.35141 * 108.52990 * 180.02562 * 6 5 4 8 8 C 1.47490 * 126.32171 * 179.97438 * 7 6 5 9 9 O 1.21602 * 119.99882 * 174.12145 * 8 7 6 10 10 N 1.34776 * 119.99703 * 354.11520 * 8 7 6 11 11 C 1.46503 * 120.00228 * 4.32043 * 10 8 7 12 12 C 1.50700 * 109.47348 * 83.55145 * 11 10 8 13 13 H 1.08006 * 120.00005 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00231 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99724 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00082 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47205 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46878 * 119.99933 * 16 14 12 19 19 H 1.48500 * 109.47077 * 240.00155 * 16 14 12 20 20 C 1.46506 * 119.99719 * 184.31228 * 10 8 7 21 21 C 1.52999 * 109.46522 * 94.91866 * 20 10 8 22 22 C 1.47206 * 109.47133 * 179.97438 * 21 20 10 23 23 N 8.88396 * 163.92494 * 310.74200 * 5 1 2 24 24 C 1.36306 * 107.35879 * 0.02562 * 7 6 5 25 25 O 1.34233 * 107.06972 * 359.97438 * 24 7 6 26 26 C 1.39966 * 118.15303 * 359.50418 * 4 3 2 27 27 C 1.37958 * 118.99287 * 0.25301 * 26 4 3 28 28 N 1.31898 * 119.54798 * 179.72703 * 2 1 3 29 29 H 1.09004 * 109.46415 * 270.28104 * 1 2 3 30 30 H 1.09001 * 109.47216 * 30.27640 * 1 2 3 31 31 H 1.08991 * 109.46918 * 150.27927 * 1 2 3 32 32 H 1.07992 * 120.50914 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.46917 * 203.54876 * 11 10 8 34 34 H 1.08996 * 109.47026 * 323.54716 * 11 10 8 35 35 H 0.97003 * 120.00028 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.46752 * 214.91241 * 20 10 8 37 37 H 1.08995 * 109.47256 * 334.92227 * 20 10 8 38 38 H 1.09002 * 109.47442 * 300.00043 * 21 20 10 39 39 H 1.09000 * 109.47526 * 60.00122 * 21 20 10 40 40 H 1.07991 * 126.46689 * 179.97438 * 24 7 6 41 41 H 1.07997 * 120.50165 * 180.26670 * 26 4 3 42 42 H 1.07999 * 119.54595 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1876 1.2006 0.0000 4 6 3.5867 1.1870 -0.0049 5 6 4.3592 2.4486 -0.0100 6 7 5.6644 2.5404 -0.0095 7 6 6.0029 3.8487 -0.0145 8 6 7.3722 4.3968 -0.0153 9 8 7.5475 5.5948 -0.1279 10 7 8.4291 3.5698 0.1089 11 6 8.2239 2.1198 0.1494 12 6 8.1171 1.5880 -1.2566 13 1 8.1948 2.2625 -2.0965 14 6 7.9202 0.2402 -1.4708 15 7 7.8261 -0.5812 -0.4481 16 14 7.7871 -0.4188 -3.2136 17 1 7.9245 0.7017 -4.1784 18 1 8.8653 -1.4120 -3.4509 19 1 6.4652 -1.0699 -3.3970 20 6 9.7833 4.1209 0.2031 21 6 10.1775 4.2558 1.6753 22 6 11.5384 4.8089 1.7702 23 7 12.5883 5.2370 1.8425 24 6 4.8453 4.5683 -0.0176 25 8 3.8332 3.6865 -0.0149 26 6 4.2352 -0.0533 0.0011 27 6 3.4756 -1.2050 0.0062 28 7 2.1575 -1.1474 0.0055 29 1 -0.3632 0.0050 1.0277 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3633 -0.8924 -0.5094 32 1 1.6485 2.1363 0.0004 33 1 9.0671 1.6474 0.6534 34 1 7.3053 1.8979 0.6926 35 1 7.6873 -1.5294 -0.5988 36 1 10.4828 3.4538 -0.3007 37 1 9.8103 5.1017 -0.2715 38 1 9.4779 4.9227 2.1792 39 1 10.1505 3.2750 2.1501 40 1 4.7587 5.6447 -0.0214 41 1 5.3137 -0.1080 0.0020 42 1 3.9666 -2.1668 0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417618409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = 47.169328 kcal Electronic energy + Delta-G solvation = -28936.898479 eV Core-core repulsion = 24883.917118 eV Total energy + Delta-G solvation = -4052.981361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.38585 -41.10089 -40.64830 -37.94669 -36.83658 -35.93064 -34.59617 -34.52557 -33.57691 -32.43527 -30.61016 -28.90615 -28.52034 -26.34702 -25.39597 -24.94114 -24.12185 -23.20431 -21.89356 -20.48241 -18.99624 -18.53156 -18.17659 -17.95604 -17.69976 -17.15330 -17.08572 -16.88638 -16.45381 -16.21144 -15.88764 -15.74872 -15.37939 -14.94799 -14.70373 -14.64628 -14.33357 -14.22919 -14.12356 -13.60429 -13.59040 -13.34268 -13.31182 -13.01178 -12.97897 -12.74166 -12.69881 -12.57748 -12.37189 -12.14745 -11.81785 -11.60112 -11.35726 -11.23763 -10.95300 -10.60030 -10.26535 -9.92366 -9.71163 -9.39002 -8.00411 -6.04197 -0.47256 0.14295 0.35453 1.34746 1.38532 1.44952 1.47049 1.49712 1.65277 1.78068 2.15082 2.38304 2.50807 2.78427 2.83510 3.15132 3.32383 3.38892 3.63555 3.77953 3.95533 4.00010 4.09890 4.13966 4.14784 4.36769 4.53613 4.63838 4.64046 4.71303 4.79143 4.80313 4.88058 4.91993 4.99590 5.06232 5.13000 5.25542 5.31940 5.59810 5.71819 5.92481 5.94038 6.31849 6.48199 6.54379 6.61079 6.96097 7.00914 7.23655 7.59484 9.06157 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.003901 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.107032 B = 7175.108673 C = 8721.868083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.117 3.883 3 C -0.142 4.142 4 C 0.025 3.975 5 C 0.193 3.807 6 N -0.398 5.398 7 C -0.090 4.090 8 C 0.599 3.401 9 O -0.576 6.576 10 N -0.581 5.581 11 C 0.241 3.759 12 C -0.510 4.510 13 H 0.030 0.970 14 C 0.048 3.952 15 N -0.899 5.899 16 Si 0.916 3.084 17 H -0.287 1.287 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.120 3.880 21 C -0.029 4.029 22 C 0.246 3.754 23 N -0.488 5.488 24 C 0.036 3.964 25 O -0.184 6.184 26 C -0.145 4.145 27 C 0.101 3.899 28 N -0.492 5.492 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.167 0.833 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.262 0.738 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.270 0.730 41 H 0.146 0.854 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 3.663 4.124 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.020 4.020 3 C -0.163 4.163 4 C 0.016 3.984 5 C -0.012 4.012 6 N -0.127 5.127 7 C -0.212 4.212 8 C 0.387 3.613 9 O -0.458 6.458 10 N -0.309 5.309 11 C 0.121 3.879 12 C -0.549 4.549 13 H 0.049 0.951 14 C -0.152 4.152 15 N -0.539 5.539 16 Si 0.744 3.256 17 H -0.212 1.212 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.005 4.005 21 C -0.070 4.070 22 C -0.071 4.071 23 N -0.167 5.167 24 C -0.039 4.039 25 O -0.069 6.069 26 C -0.166 4.166 27 C -0.055 4.055 28 N -0.203 5.203 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.185 0.815 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.286 0.714 41 H 0.164 0.836 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.413 3.398 4.225 13.545 hybrid contribution 0.341 0.455 -1.319 1.436 sum -12.072 3.852 2.906 13.001 Atomic orbital electron populations 1.20809 0.85522 1.04674 1.04430 1.21821 0.98941 0.87138 0.94147 1.22261 0.91739 1.01416 1.00932 1.17707 0.92731 0.86996 1.00973 1.24005 0.87765 0.84602 1.04788 1.71426 1.09968 1.18628 1.12630 1.21796 0.96406 0.89542 1.13465 1.16926 0.83230 0.84962 0.76150 1.90717 1.86078 1.14978 1.54074 1.48029 1.05163 1.09243 1.68486 1.19664 0.98782 0.72790 0.96696 1.21329 1.48627 0.92445 0.92505 0.95121 1.25029 0.95365 0.96980 0.97861 1.69940 1.50421 1.03715 1.29827 0.86182 0.77683 0.78200 0.83501 1.21238 1.20774 1.20795 1.21284 0.83326 1.00888 0.94968 1.19681 0.84358 1.03882 0.99092 1.29171 0.94473 0.91750 0.91732 1.81218 1.13729 1.11620 1.10094 1.26016 0.82978 0.97169 0.97714 1.84394 1.37364 1.16055 1.69071 1.22577 1.03555 0.91944 0.98571 1.22865 0.88992 0.98674 0.94942 1.67541 1.10065 1.30289 1.12364 0.88801 0.88412 0.90301 0.81528 0.95637 0.91077 0.92804 0.89611 0.89686 0.85674 0.85363 0.71434 0.83619 0.80884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 10.16 71.24 0.72 -0.67 16 2 C 0.12 2.76 6.78 42.50 0.29 3.05 16 3 C -0.14 -3.46 9.44 22.62 0.21 -3.25 16 4 C 0.02 0.79 5.91 -19.88 -0.12 0.67 16 5 C 0.19 6.53 7.91 87.41 0.69 7.22 16 6 N -0.40 -15.53 6.81 -294.59 -2.01 -17.54 16 7 C -0.09 -3.18 6.64 40.62 0.27 -2.91 16 8 C 0.60 22.23 7.61 86.68 0.66 22.89 16 9 O -0.58 -21.71 16.38 -4.04 -0.07 -21.77 16 10 N -0.58 -21.43 2.47 -829.95 -2.05 -23.49 16 11 C 0.24 10.40 4.79 85.63 0.41 10.80 16 12 C -0.51 -25.10 8.44 25.60 0.22 -24.88 16 13 H 0.03 1.62 7.81 -2.91 -0.02 1.59 16 14 C 0.05 2.39 5.46 84.65 0.46 2.85 16 15 N -0.90 -44.81 12.64 21.45 0.27 -44.53 16 16 Si 0.92 41.32 29.54 68.60 2.03 43.35 16 17 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 C 0.12 3.60 5.42 86.38 0.47 4.07 16 21 C -0.03 -0.67 6.02 28.79 0.17 -0.50 16 22 C 0.25 6.53 15.43 89.44 1.38 7.91 16 23 N -0.49 -15.54 18.54 20.01 0.37 -15.17 16 24 C 0.04 0.95 11.94 67.37 0.80 1.75 16 25 O -0.18 -5.07 10.56 -3.77 -0.04 -5.11 16 26 C -0.15 -5.07 9.78 22.62 0.22 -4.85 16 27 C 0.10 3.08 11.17 84.61 0.95 4.02 16 28 N -0.49 -13.91 10.25 -184.16 -1.89 -15.79 16 29 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.10 0.96 8.08 -2.39 -0.02 0.94 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.17 2.99 7.98 -2.91 -0.02 2.96 16 33 H 0.03 1.13 8.02 -2.39 -0.02 1.11 16 34 H 0.07 3.27 5.27 -2.39 -0.01 3.26 16 35 H 0.26 12.57 8.31 -92.71 -0.77 11.80 16 36 H 0.09 2.63 8.11 -2.39 -0.02 2.61 16 37 H 0.08 2.59 7.23 -2.39 -0.02 2.57 16 38 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.27 4.58 8.06 -2.92 -0.02 4.55 16 41 H 0.15 6.08 7.25 -2.91 -0.02 6.06 16 42 H 0.17 4.66 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -64.21 378.15 5.49 -58.72 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.07 Total: 13.14 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 7.81 Total: 28.19 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -5.31 Total: -116.52 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.11 Total: -26.89 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -64.21 5.49 -58.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417618409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.886 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds