Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38056 * 126.29328 * 2 1 4 4 C 1.47414 * 126.41514 * 359.94450 * 3 2 1 5 5 O 1.21620 * 120.00013 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00187 * 180.02562 * 4 3 2 7 7 C 1.40066 * 120.00218 * 174.72614 * 6 4 3 8 8 C 1.38857 * 120.01142 * 326.51210 * 7 6 4 9 9 C 1.38089 * 119.97715 * 179.74401 * 8 7 6 10 10 C 1.38722 * 120.01684 * 0.53389 * 9 8 7 11 11 O 1.35975 * 119.98231 * 179.70177 * 10 9 8 12 12 C 1.42897 * 117.00030 * 0.02562 * 11 10 9 13 13 C 1.47200 * 109.47392 * 180.02562 * 12 11 10 14 14 N 9.45924 * 128.13598 * 170.34977 * 4 1 2 15 15 C 1.38721 * 120.03330 * 359.72093 * 10 9 8 16 16 C 1.38084 * 120.01707 * 0.02562 * 15 10 9 17 17 C 1.41296 * 107.16908 * 179.97438 * 3 2 1 18 18 N 1.30441 * 108.02557 * 0.02562 * 17 3 2 19 19 N 1.34264 * 126.29401 * 179.68829 * 2 1 3 20 20 C 1.46505 * 125.75680 * 359.97438 * 19 2 1 21 21 C 1.50698 * 109.47552 * 89.99275 * 20 19 2 22 22 H 1.08003 * 119.99613 * 0.02562 * 21 20 19 23 23 C 1.37874 * 119.99940 * 180.02562 * 21 20 19 24 24 N 1.31506 * 120.00094 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99581 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47432 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47067 * 120.00632 * 25 23 21 28 28 H 1.48504 * 109.47406 * 240.00095 * 25 23 21 29 29 H 1.08997 * 109.46890 * 90.02153 * 1 2 3 30 30 H 1.08995 * 109.46783 * 210.02799 * 1 2 3 31 31 H 1.09000 * 109.46585 * 330.02644 * 1 2 3 32 32 H 0.97005 * 120.00147 * 354.72579 * 6 4 3 33 33 H 1.07994 * 120.00819 * 0.02562 * 8 7 6 34 34 H 1.07998 * 119.98859 * 180.23558 * 9 8 7 35 35 H 1.08998 * 109.47068 * 299.99434 * 12 11 10 36 36 H 1.08998 * 109.47681 * 59.99896 * 12 11 10 37 37 H 1.08000 * 119.98940 * 180.02562 * 15 10 9 38 38 H 1.07995 * 120.01190 * 179.97438 * 16 15 10 39 39 H 1.08001 * 125.98524 * 179.97438 * 17 3 2 40 40 H 1.08996 * 109.47129 * 210.00215 * 20 19 2 41 41 H 1.09008 * 109.46494 * 329.99739 * 20 19 2 42 42 H 0.97007 * 120.00030 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8860 2.5202 -0.0011 5 8 0.6996 2.7878 -0.0027 6 7 2.8001 3.5106 -0.0015 7 6 2.3876 4.8444 -0.1141 8 6 1.2722 5.1644 -0.8767 9 6 0.8630 6.4790 -0.9829 10 6 1.5725 7.4810 -0.3371 11 8 1.1725 8.7759 -0.4471 12 6 0.0135 9.0315 -1.2429 13 6 -0.2688 10.4762 -1.2489 14 7 -0.4866 11.5912 -1.2525 15 6 2.6900 7.1625 0.4207 16 6 3.0973 5.8479 0.5321 17 6 3.6592 0.6498 0.0006 18 7 3.6342 -0.6543 0.0004 19 7 2.3018 -1.0821 0.0059 20 6 1.8503 -2.4759 0.0140 21 6 1.6947 -2.9619 -1.4039 22 1 1.9110 -2.2990 -2.2287 23 6 1.2764 -4.2527 -1.6483 24 7 1.0126 -5.0596 -0.6439 25 14 1.0843 -4.8553 -3.4059 26 1 1.4415 -3.7624 -4.3457 27 1 1.9829 -6.0157 -3.6323 28 1 -0.3236 -5.2671 -3.6370 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3632 0.8902 0.5134 32 1 3.7438 3.2997 0.0762 33 1 0.7223 4.3849 -1.3829 34 1 -0.0067 6.7277 -1.5729 35 1 0.1915 8.6923 -2.2634 36 1 -0.8393 8.4961 -0.8256 37 1 3.2415 7.9431 0.9236 38 1 3.9675 5.6001 1.1217 39 1 4.5450 1.2676 0.0004 40 1 2.5851 -3.0928 0.5311 41 1 0.8918 -2.5442 0.5287 42 1 0.7178 -5.9677 -0.8158 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001432308341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = 38.290710 kcal Electronic energy + Delta-G solvation = -27154.032057 eV Core-core repulsion = 23100.665690 eV Total energy + Delta-G solvation = -4053.366367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.36639 -41.36372 -40.35385 -38.41132 -37.41401 -35.83424 -35.28729 -33.78742 -32.76979 -31.98841 -30.69662 -29.49231 -28.63699 -27.91324 -25.42804 -24.30176 -23.68101 -22.66400 -21.16028 -20.60783 -19.34827 -19.24526 -18.85157 -18.44489 -18.03396 -17.16252 -16.90460 -16.60389 -16.15707 -16.09797 -15.64848 -15.34356 -15.28240 -14.89629 -14.62702 -14.58616 -14.33235 -14.18272 -14.05534 -13.96643 -13.68815 -13.56555 -13.51836 -13.36658 -13.12945 -13.05341 -12.94923 -12.70381 -12.31990 -12.19151 -11.85328 -11.82014 -11.67126 -10.93364 -10.75719 -10.65361 -10.25833 -9.86343 -9.53241 -8.59437 -8.37182 -6.53474 0.32127 0.48129 0.78528 1.12516 1.35389 1.37056 1.40498 1.50416 1.63143 1.65699 2.27926 2.33947 2.42883 2.48312 2.95206 2.95461 3.13031 3.73810 3.75436 3.93701 4.03508 4.13850 4.21462 4.24735 4.29045 4.41171 4.50811 4.56403 4.64122 4.70580 4.81456 4.91140 4.96722 5.11587 5.17614 5.19769 5.43072 5.48891 5.50477 5.58324 5.68789 5.75688 5.90983 6.04936 6.33223 6.44404 6.55869 6.58128 6.85869 7.17862 7.30605 8.70692 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021877 B = 0.001901 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.561758 B =14727.027989 C =15443.287375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.149 3.851 3 C -0.331 4.331 4 C 0.608 3.392 5 O -0.560 6.560 6 N -0.658 5.658 7 C 0.106 3.894 8 C -0.102 4.102 9 C -0.181 4.181 10 C 0.108 3.892 11 O -0.323 6.323 12 C 0.153 3.847 13 C 0.239 3.761 14 N -0.461 5.461 15 C -0.131 4.131 16 C -0.102 4.102 17 C 0.081 3.919 18 N -0.337 5.337 19 N -0.338 5.338 20 C 0.266 3.734 21 C -0.555 4.555 22 H 0.053 0.947 23 C 0.024 3.976 24 N -0.916 5.916 25 Si 0.971 3.029 26 H -0.272 1.272 27 H -0.275 1.275 28 H -0.269 1.269 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.423 0.577 33 H 0.121 0.879 34 H 0.162 0.838 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.230 0.770 40 H 0.031 0.969 41 H 0.051 0.949 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 23.160 0.200 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.013 3.987 3 C -0.346 4.346 4 C 0.399 3.601 5 O -0.440 6.440 6 N -0.304 5.304 7 C 0.012 3.988 8 C -0.122 4.122 9 C -0.200 4.200 10 C 0.062 3.938 11 O -0.237 6.237 12 C 0.076 3.924 13 C -0.079 4.079 14 N -0.141 5.141 15 C -0.150 4.150 16 C -0.122 4.122 17 C -0.106 4.106 18 N -0.156 5.156 19 N -0.115 5.115 20 C 0.148 3.852 21 C -0.593 4.593 22 H 0.071 0.929 23 C -0.177 4.177 24 N -0.555 5.555 25 Si 0.795 3.205 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.194 1.194 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.262 0.738 33 H 0.139 0.861 34 H 0.179 0.821 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.246 0.754 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.392 23.650 0.334 23.694 hybrid contribution -0.130 -0.845 -0.722 1.119 sum 1.261 22.805 -0.388 22.843 Atomic orbital electron populations 1.20575 0.85794 1.04122 1.04040 1.21983 0.95963 0.86690 0.94036 1.19817 0.93342 0.92607 1.28878 1.17137 0.85035 0.83700 0.74275 1.90696 1.17587 1.84305 1.51398 1.43071 1.10930 1.03365 1.73003 1.17896 0.98071 0.83597 0.99192 1.21036 0.96813 0.96811 0.97542 1.21337 1.02828 0.91636 1.04207 1.18850 0.95235 0.81776 0.97890 1.86013 1.44923 1.24424 1.68291 1.20221 0.90036 0.82200 0.99936 1.28890 0.92509 0.94564 0.91950 1.81298 1.09370 1.13713 1.09676 1.20436 0.96552 0.96683 1.01302 1.20924 1.01585 0.90794 0.98946 1.24569 0.97689 0.91607 0.96739 1.77115 0.98292 1.14526 1.25664 1.49117 1.03442 1.07770 1.51179 1.19377 0.95335 0.72395 0.98137 1.21426 1.47776 0.98455 0.91607 0.92922 1.25711 0.93868 0.96026 1.02123 1.69997 1.44877 1.07764 1.32812 0.85309 0.78395 0.78192 0.78611 1.19626 1.19992 1.19422 0.89712 0.91193 0.87770 0.73822 0.86099 0.82070 0.83935 0.84251 0.83248 0.82486 0.75416 0.95059 0.93082 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.98 9.57 71.24 0.68 -2.30 16 2 C 0.15 5.73 7.01 42.14 0.30 6.03 16 3 C -0.33 -10.68 6.13 -20.15 -0.12 -10.80 16 4 C 0.61 17.07 7.55 86.66 0.65 17.72 16 5 O -0.56 -18.29 12.53 -4.10 -0.05 -18.34 16 6 N -0.66 -12.91 5.33 -306.33 -1.63 -14.55 16 7 C 0.11 1.98 6.28 38.12 0.24 2.22 16 8 C -0.10 -2.00 8.65 22.38 0.19 -1.80 16 9 C -0.18 -2.40 9.03 22.35 0.20 -2.20 16 10 C 0.11 1.40 6.69 22.50 0.15 1.55 16 11 O -0.32 -3.68 10.10 -93.27 -0.94 -4.62 16 12 C 0.15 0.74 5.21 70.18 0.37 1.11 16 13 C 0.24 2.94 15.82 89.44 1.41 4.36 16 14 N -0.46 -9.08 18.54 20.01 0.37 -8.71 16 15 C -0.13 -1.68 9.98 22.35 0.22 -1.46 16 16 C -0.10 -1.38 9.96 22.38 0.22 -1.15 16 17 C 0.08 2.43 11.51 85.65 0.99 3.41 16 18 N -0.34 -13.65 12.50 -56.27 -0.70 -14.36 16 19 N -0.34 -14.90 3.56 -336.67 -1.20 -16.10 16 20 C 0.27 13.33 5.97 85.63 0.51 13.84 16 21 C -0.55 -29.77 9.39 25.60 0.24 -29.53 16 22 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 23 C 0.02 1.27 5.46 84.66 0.46 1.74 16 24 N -0.92 -50.28 13.29 21.44 0.28 -50.00 16 25 Si 0.97 41.70 29.54 68.60 2.03 43.73 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 29 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.07 2.40 7.04 -2.39 -0.02 2.38 16 31 H 0.10 3.30 6.50 -2.39 -0.02 3.29 16 32 H 0.42 5.50 7.79 -92.70 -0.72 4.78 16 33 H 0.12 2.90 6.42 -2.91 -0.02 2.88 16 34 H 0.16 1.02 6.29 -2.91 -0.02 1.00 16 35 H 0.14 -0.13 7.66 -2.39 -0.02 -0.15 16 36 H 0.14 -0.02 7.66 -2.39 -0.02 -0.04 16 37 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.23 4.00 7.51 -2.91 -0.02 3.98 16 40 H 0.03 1.69 8.14 -2.39 -0.02 1.68 16 41 H 0.05 2.56 7.01 -2.38 -0.02 2.54 16 42 H 0.27 14.02 8.31 -92.70 -0.77 13.25 16 Total: -1.00 -73.54 373.29 5.25 -68.29 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.38 Total: 11.92 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 6.72 Total: 2.73 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -2.88 Total: -103.71 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.99 Total: -22.97 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -73.54 5.25 -68.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001432308341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.581 kcal (2) G-P(sol) polarization free energy of solvation -73.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds