Wall clock time and date at job start Sat Apr 11 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30857 * 125.88901 * 2 1 4 4 N 1.40065 * 108.31113 * 179.97438 * 3 2 1 5 5 C 1.46496 * 126.01950 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47507 * 90.01748 * 5 4 3 7 7 H 1.07998 * 119.99816 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00320 * 179.72416 * 6 5 4 9 9 N 1.31510 * 119.99980 * 180.27493 * 8 6 5 10 10 Si 1.86799 * 119.99768 * 0.27935 * 8 6 5 11 11 H 1.48502 * 109.47303 * 89.99570 * 10 8 6 12 12 H 1.48497 * 109.46998 * 209.99692 * 10 8 6 13 13 H 1.48503 * 109.47239 * 330.00025 * 10 8 6 14 14 C 1.35241 * 107.97010 * 0.22113 * 4 3 2 15 15 C 1.50690 * 126.16998 * 179.77733 * 14 4 3 16 16 C 1.35661 * 107.66221 * 359.63811 * 14 4 3 17 17 O 1.36168 * 126.08208 * 180.15831 * 16 14 4 18 18 C 1.34629 * 117.00040 * 270.26795 * 17 16 14 19 19 O 1.21448 * 119.99748 * 359.97438 * 18 17 16 20 20 C 1.48090 * 120.00231 * 180.02562 * 18 17 16 21 21 N 1.32818 * 119.56849 * 354.41749 * 20 18 17 22 22 C 1.31327 * 121.80340 * 179.97438 * 21 20 18 23 23 C 1.39909 * 120.70377 * 0.02562 * 22 21 20 24 24 C 1.43207 * 120.46736 * 179.97438 * 23 22 21 25 25 N 9.74287 * 78.92185 * 188.46382 * 2 1 3 26 26 C 1.39940 * 119.06980 * 359.97438 * 23 22 21 27 27 C 1.38386 * 118.35693 * 359.74602 * 26 23 22 28 28 C 1.50700 * 120.40073 * 180.26484 * 27 26 23 29 29 H 1.08997 * 109.47383 * 90.03003 * 1 2 3 30 30 H 1.09000 * 109.47294 * 210.03145 * 1 2 3 31 31 H 1.09005 * 109.47488 * 330.02939 * 1 2 3 32 32 H 1.09000 * 109.47130 * 330.02059 * 5 4 3 33 33 H 1.09004 * 109.47609 * 210.01977 * 5 4 3 34 34 H 0.97000 * 119.99767 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47341 * 90.00231 * 15 14 4 36 36 H 1.09009 * 109.47314 * 209.99935 * 15 14 4 37 37 H 1.09000 * 109.47026 * 329.99850 * 15 14 4 38 38 H 1.08001 * 119.64674 * 180.02562 * 22 21 20 39 39 H 1.07997 * 120.81889 * 179.97438 * 26 23 22 40 40 H 1.09003 * 109.46753 * 263.56590 * 28 27 26 41 41 H 1.09000 * 109.47134 * 23.56447 * 28 27 26 42 42 H 1.08997 * 109.46804 * 143.57009 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2740 1.0601 0.0000 4 7 3.6093 0.6371 0.0006 5 6 4.7884 1.5065 0.0003 6 6 5.1927 1.8053 1.4209 7 1 4.6281 1.3889 2.2420 8 6 6.2872 2.6053 1.6726 9 7 6.6432 2.8616 2.9123 10 14 7.2641 3.3251 0.2524 11 1 6.6962 4.6457 -0.1201 12 1 8.6816 3.4935 0.6618 13 1 7.1912 2.4083 -0.9136 14 6 3.6186 -0.7152 -0.0040 15 6 4.8411 -1.5962 -0.0099 16 6 2.3288 -1.1357 0.0007 17 8 1.9074 -2.4305 0.0014 18 6 1.7188 -3.0126 -1.1978 19 8 1.9236 -2.3841 -2.2167 20 6 1.2607 -4.4187 -1.2746 21 7 1.1453 -5.1323 -0.1603 22 6 0.7427 -6.3822 -0.1774 23 6 0.4185 -7.0118 -1.3840 24 6 -0.0194 -8.3752 -1.3969 25 7 -0.3651 -9.4572 -1.4073 26 6 0.5282 -6.2906 -2.5783 27 6 0.9506 -4.9743 -2.5147 28 6 1.0793 -4.1532 -3.7718 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3634 0.8903 0.5134 32 1 4.5527 2.4383 -0.5139 33 1 5.6091 1.0057 -0.5133 34 1 7.4134 3.4241 3.0893 35 1 5.1383 -1.8122 1.0163 36 1 4.6143 -2.5290 -0.5264 37 1 5.6549 -1.0848 -0.5239 38 1 0.6610 -6.9299 0.7498 39 1 0.2857 -6.7489 -3.5256 40 1 2.1144 -4.1712 -4.1131 41 1 0.4344 -4.5698 -4.5456 42 1 0.7824 -3.1249 -3.5660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001439977403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:02 Heat of formation + Delta-G solvation = 72.376382 kcal Electronic energy + Delta-G solvation = -28260.811202 eV Core-core repulsion = 24208.922901 eV Total energy + Delta-G solvation = -4051.888301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62243 -40.96723 -39.61011 -37.24114 -36.78815 -34.22203 -34.05997 -32.95701 -32.62369 -31.04600 -29.45117 -28.34035 -26.91619 -26.26949 -25.84653 -23.41095 -22.97707 -21.96257 -19.82993 -19.28012 -19.11630 -18.48598 -17.62344 -17.20129 -17.03106 -16.08574 -15.57764 -15.17213 -14.81236 -14.65860 -14.34914 -14.11528 -13.94342 -13.88175 -13.61002 -13.49849 -13.35466 -13.07171 -13.06211 -12.98401 -12.83892 -12.64865 -12.53441 -12.23907 -12.14117 -12.02854 -11.84325 -11.17629 -11.03719 -10.78882 -10.61558 -10.39852 -10.31166 -10.12141 -9.85663 -9.75158 -9.60407 -8.84365 -8.48215 -7.82077 -6.32305 -4.36698 -0.41793 0.53512 1.86126 2.02671 2.11298 2.52864 2.63027 3.05872 3.08714 3.13002 3.17216 3.21514 3.29538 3.31440 3.76245 4.03505 4.15831 4.17618 4.31141 4.56917 4.89159 4.94907 4.97732 5.07061 5.19225 5.24942 5.36796 5.40595 5.55731 5.65242 5.67821 5.81824 5.83285 5.93560 5.98958 6.05257 6.18903 6.26928 6.43326 6.47934 6.66297 6.80750 6.98251 7.16650 7.19232 7.54405 7.96848 8.20911 8.28360 8.71809 9.21677 10.79880 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.002435 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.852280 B =11498.573202 C =11695.031897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.066 3.934 3 N -0.276 5.276 4 N -0.312 5.312 5 C 0.230 3.770 6 C -0.545 4.545 7 H 0.083 0.917 8 C 0.081 3.919 9 N -0.883 5.883 10 Si 0.873 3.127 11 H -0.270 1.270 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.113 3.887 15 C -0.087 4.087 16 C -0.106 4.106 17 O -0.223 6.223 18 C 0.496 3.504 19 O -0.472 6.472 20 C 0.123 3.877 21 N -0.422 5.422 22 C 0.143 3.857 23 C -0.050 4.050 24 C 0.255 3.745 25 N -0.397 5.397 26 C -0.037 4.037 27 C -0.068 4.068 28 C -0.124 4.124 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.270 0.730 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.177 0.823 39 H 0.156 0.844 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 -17.628 -11.936 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 N -0.100 5.100 4 N -0.092 5.092 5 C 0.112 3.888 6 C -0.583 4.583 7 H 0.101 0.899 8 C -0.124 4.124 9 N -0.519 5.519 10 Si 0.699 3.301 11 H -0.195 1.195 12 H -0.204 1.204 13 H -0.189 1.189 14 C -0.020 4.020 15 C -0.145 4.145 16 C -0.160 4.160 17 O -0.133 6.133 18 C 0.339 3.661 19 O -0.357 6.357 20 C -0.013 4.013 21 N -0.132 5.132 22 C -0.021 4.021 23 C -0.055 4.055 24 C -0.062 4.062 25 N -0.072 5.072 26 C -0.065 4.065 27 C -0.071 4.071 28 C -0.180 4.180 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.194 0.806 39 H 0.174 0.826 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.107 -17.142 -11.338 23.362 hybrid contribution 0.610 -0.386 -1.251 1.444 sum -10.496 -17.528 -12.589 23.998 Atomic orbital electron populations 1.20096 0.87025 1.03232 1.02380 1.22288 0.96908 0.89714 1.01076 1.77402 0.86945 1.21546 1.24106 1.48700 1.05822 1.03515 1.51134 1.20125 0.78962 0.89612 1.00114 1.21121 1.14179 1.32901 0.90087 0.89932 1.24792 0.96508 0.95250 0.95842 1.69863 1.26635 1.36779 1.18639 0.86905 0.80081 0.80550 0.82575 1.19505 1.20433 1.18889 1.20888 0.95958 0.86155 0.99039 1.20386 0.93138 0.96945 1.04007 1.17619 0.90594 0.81856 1.25930 1.84909 1.75547 1.23636 1.29164 1.21421 0.75223 0.85954 0.83523 1.90820 1.45460 1.63858 1.35586 1.20266 0.99323 0.92389 0.89358 1.67829 1.09676 1.06398 1.29257 1.23069 0.92290 0.89893 0.96822 1.17247 1.04286 0.87705 0.96273 1.25271 0.94145 0.92319 0.94446 1.81312 1.08001 1.11291 1.06552 1.21584 0.94547 0.92343 0.97989 1.20852 0.95682 0.94251 0.96288 1.21183 1.03585 1.01236 0.92006 0.91096 0.90786 0.90620 0.93106 0.93083 0.91997 0.89192 0.91119 0.90453 0.80562 0.82638 0.89490 0.91264 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.44 36.00 0.38 -0.61 16 2 C 0.07 1.27 7.23 -82.28 -0.59 0.68 16 3 N -0.28 -6.14 12.57 33.73 0.42 -5.72 16 4 N -0.31 -7.03 3.60 -58.16 -0.21 -7.24 16 5 C 0.23 5.38 5.07 -5.20 -0.03 5.35 16 6 C -0.54 -14.84 9.94 -34.44 -0.34 -15.19 16 7 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 8 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 9 N -0.88 -25.67 13.96 55.43 0.77 -24.90 16 10 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 14 C 0.11 2.26 6.95 -82.02 -0.57 1.68 16 15 C -0.09 -1.41 10.09 36.00 0.36 -1.05 16 16 C -0.11 -2.01 5.35 -39.77 -0.21 -2.22 16 17 O -0.22 -3.66 9.94 -25.34 -0.25 -3.91 16 18 C 0.50 6.97 7.83 34.77 0.27 7.24 16 19 O -0.47 -7.22 13.05 -19.23 -0.25 -7.48 16 20 C 0.12 1.32 6.75 -82.97 -0.56 0.76 16 21 N -0.42 -4.29 10.10 -9.48 -0.10 -4.39 16 22 C 0.14 0.97 10.92 -17.14 -0.19 0.79 16 23 C -0.05 -0.29 5.75 -106.71 -0.61 -0.91 16 24 C 0.25 1.79 15.36 -22.47 -0.35 1.45 16 25 N -0.40 -3.76 18.54 41.83 0.78 -2.98 16 26 C -0.04 -0.20 9.55 -38.89 -0.37 -0.57 16 27 C -0.07 -0.53 5.92 -104.14 -0.62 -1.15 16 28 C -0.12 -0.89 8.72 36.01 0.31 -0.58 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.18 7.58 -51.93 -0.39 0.79 16 33 H 0.05 1.11 6.10 -51.93 -0.32 0.79 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.08 1.21 7.09 -51.93 -0.37 0.84 16 38 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.16 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.31 8.05 -51.93 -0.42 -0.10 16 42 H 0.10 0.98 5.83 -51.93 -0.30 0.68 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -33.23 377.31 -5.80 -39.04 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -4.77 Total: -0.90 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.21 Total: -2.22 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 1.67 Total: -45.23 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.50 Total: -11.39 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.23 -5.80 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439977403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.412 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds