Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38136 * 120.03807 * 2 1 4 4 C 1.38259 * 120.07026 * 180.02562 * 3 2 1 5 5 S 1.76197 * 119.92954 * 179.97438 * 4 3 2 6 6 N 1.65604 * 107.21678 * 114.99972 * 5 4 3 7 7 O 1.42098 * 106.40658 * 228.54229 * 5 4 3 8 8 O 1.42105 * 106.40211 * 1.46305 * 5 4 3 9 9 C 1.38302 * 120.14328 * 0.02562 * 4 3 2 10 10 C 1.50696 * 119.96620 * 180.02562 * 9 4 3 11 11 C 1.38095 * 120.07129 * 359.97438 * 9 4 3 12 12 C 1.38857 * 120.03384 * 180.02562 * 2 1 3 13 13 N 1.39920 * 120.07169 * 0.02562 * 12 2 1 14 14 C 1.34775 * 119.99979 * 204.82045 * 13 12 2 15 15 O 1.21285 * 120.00011 * 5.51524 * 14 13 12 16 16 C 1.50704 * 120.00034 * 185.51500 * 14 13 12 17 17 C 1.52990 * 109.47163 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47403 * 180.02562 * 17 16 14 19 19 C 1.50694 * 109.47462 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00002 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00153 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00372 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00090 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46911 * 89.99699 * 23 21 19 25 25 H 1.48500 * 109.47624 * 210.00120 * 23 21 19 26 26 H 1.48506 * 109.46900 * 330.00436 * 23 21 19 27 27 H 1.08997 * 109.47073 * 89.99392 * 1 2 3 28 28 H 1.08999 * 109.46769 * 210.00103 * 1 2 3 29 29 H 1.09004 * 109.46435 * 329.99539 * 1 2 3 30 30 H 1.07999 * 119.96178 * 359.75014 * 3 2 1 31 31 H 0.97004 * 119.99674 * 149.99954 * 6 5 4 32 32 H 0.96995 * 120.00045 * 330.00054 * 6 5 4 33 33 H 1.09002 * 109.47454 * 269.97382 * 10 9 4 34 34 H 1.08998 * 109.47479 * 29.97324 * 10 9 4 35 35 H 1.09000 * 109.47263 * 149.97292 * 10 9 4 36 36 H 1.08004 * 120.03569 * 180.02562 * 11 9 4 37 37 H 0.97001 * 119.99940 * 24.81002 * 13 12 2 38 38 H 1.09001 * 109.46964 * 300.00552 * 16 14 13 39 39 H 1.09000 * 109.46629 * 60.00043 * 16 14 13 40 40 H 1.09001 * 109.47725 * 300.00200 * 17 16 14 41 41 H 1.09000 * 109.47219 * 60.00519 * 17 16 14 42 42 H 1.08997 * 109.46820 * 300.00176 * 18 17 16 43 43 H 1.09000 * 109.46617 * 60.00018 * 18 17 16 44 44 H 0.96992 * 120.00127 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5811 1.1966 -0.0005 5 16 4.4593 2.7241 -0.0012 6 7 5.2837 2.8161 1.4321 7 8 5.4414 2.6220 -1.0232 8 8 3.4779 3.7512 0.0337 9 6 4.2763 0.0010 -0.0016 10 6 5.7832 0.0065 -0.0016 11 6 3.5909 -1.1979 -0.0016 12 6 2.2020 -1.2021 -0.0005 13 7 1.5046 -2.4152 -0.0016 14 6 2.0870 -3.5277 0.4878 15 8 3.1748 -3.4589 1.0198 16 6 1.3866 -4.8572 0.3741 17 6 2.2566 -5.9474 1.0027 18 6 1.5458 -7.2973 0.8867 19 6 2.4030 -8.3713 1.5053 20 1 3.3590 -8.1165 1.9384 21 6 1.9669 -9.6792 1.5185 22 7 2.7148 -10.6164 2.0589 23 14 0.3137 -10.1201 0.7689 24 1 0.4948 -10.4558 -0.6663 25 1 -0.2573 -11.2903 1.4828 26 1 -0.6106 -8.9645 0.8941 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3632 0.8900 0.5139 30 1 1.6585 2.1311 -0.0041 31 1 6.1226 3.3011 1.4788 32 1 4.9279 2.3852 2.2248 33 1 6.1466 0.0083 -1.0293 34 1 6.1433 0.8976 0.5126 35 1 6.1498 -0.8823 0.5118 36 1 4.1344 -2.1312 -0.0020 37 1 0.6020 -2.4553 -0.3545 38 1 0.4302 -4.8097 0.8948 39 1 1.2168 -5.0896 -0.6772 40 1 3.2128 -5.9948 0.4817 41 1 2.4268 -5.7153 2.0540 42 1 0.5895 -7.2503 1.4075 43 1 1.3760 -7.5293 -0.1647 44 1 2.4081 -11.5365 2.0678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001455567440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -131.432583 kcal Electronic energy + Delta-G solvation = -26801.065856 eV Core-core repulsion = 22843.490934 eV Total energy + Delta-G solvation = -3957.574921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.97270 -40.03075 -38.32245 -36.94945 -36.59196 -36.14442 -34.60584 -34.18286 -33.98978 -31.65622 -30.41109 -29.86656 -26.26578 -25.89114 -24.34689 -22.55580 -22.10228 -21.38078 -20.45461 -19.10818 -18.77488 -18.47480 -18.28412 -18.07514 -17.38554 -16.97902 -16.66754 -16.30740 -15.90292 -15.57517 -15.26948 -15.18946 -14.85990 -14.69803 -14.45051 -14.27301 -13.99685 -13.84202 -13.52930 -13.31748 -13.22255 -13.20880 -13.08243 -12.89343 -12.85278 -12.74992 -12.53780 -12.46295 -12.00360 -11.82790 -11.78503 -11.73969 -11.49936 -11.33405 -11.26345 -10.84689 -10.75051 -9.78842 -9.42031 -8.27679 -6.33355 -0.61989 -0.34934 0.18400 1.38034 1.38861 1.42084 1.53772 1.82718 2.13315 2.37305 2.38825 2.71059 3.07721 3.39425 3.54411 3.66996 3.77060 3.94938 4.03858 4.14010 4.21749 4.29816 4.39341 4.53946 4.62573 4.67954 4.77202 4.81266 4.86287 4.88453 4.94331 4.98377 5.03030 5.07459 5.21129 5.24788 5.24936 5.31375 5.55264 5.59410 5.68005 5.80631 6.25006 6.30655 6.32172 6.75902 6.96029 7.31109 8.89857 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025388 B = 0.002072 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.597466 B =13508.479143 C =14319.643611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.144 4.144 3 C -0.004 4.004 4 C -0.704 4.704 5 S 2.730 3.270 6 N -1.235 6.235 7 O -0.989 6.989 8 O -0.992 6.992 9 C 0.028 3.972 10 C -0.149 4.149 11 C -0.179 4.179 12 C 0.204 3.796 13 N -0.659 5.659 14 C 0.515 3.485 15 O -0.549 6.549 16 C -0.129 4.129 17 C -0.082 4.082 18 C -0.010 4.010 19 C -0.539 4.539 20 H 0.020 0.980 21 C -0.005 4.005 22 N -0.957 5.957 23 Si 0.961 3.039 24 H -0.266 1.266 25 H -0.289 1.289 26 H -0.233 1.233 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.164 0.836 31 H 0.432 0.568 32 H 0.429 0.571 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.136 0.864 37 H 0.433 0.567 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.032 0.968 43 H 0.030 0.970 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 30.326 -5.396 31.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.148 4.148 3 C -0.024 4.024 4 C -0.793 4.793 5 S 2.818 3.182 6 N -0.915 5.915 7 O -0.979 6.979 8 O -0.982 6.982 9 C 0.026 3.974 10 C -0.206 4.206 11 C -0.200 4.200 12 C 0.107 3.893 13 N -0.304 5.304 14 C 0.305 3.695 15 O -0.425 6.425 16 C -0.168 4.168 17 C -0.120 4.120 18 C -0.048 4.048 19 C -0.577 4.577 20 H 0.038 0.962 21 C -0.201 4.201 22 N -0.598 5.598 23 Si 0.783 3.217 24 H -0.191 1.191 25 H -0.215 1.215 26 H -0.156 1.156 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.182 0.818 31 H 0.265 0.735 32 H 0.259 0.741 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.153 0.847 37 H 0.274 0.726 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.403 30.725 -5.832 31.582 hybrid contribution -0.241 -1.668 0.541 1.770 sum -4.644 29.057 -5.291 29.897 Atomic orbital electron populations 1.20879 0.87603 1.04660 1.04211 1.20019 0.98343 0.90516 1.05934 1.20940 0.91578 0.99116 0.90728 1.30359 1.06368 1.18458 1.24114 1.00517 0.72577 0.72430 0.72654 1.52819 1.39447 1.71291 1.27920 1.93581 1.60289 1.87012 1.56971 1.93554 1.62554 1.55377 1.86677 1.19548 0.96569 0.91073 0.90200 1.21357 0.89275 1.05026 1.04901 1.21430 0.93531 0.99334 1.05711 1.18128 0.91499 0.86034 0.93677 1.43738 1.19763 1.06058 1.60854 1.21549 0.85678 0.86559 0.75715 1.90685 1.22697 1.86589 1.42543 1.21785 1.00758 0.88577 1.05708 1.21062 0.97863 0.93628 0.99487 1.19550 0.96013 0.92369 0.96820 1.21557 1.04675 0.93394 1.38065 0.96194 1.26209 1.02272 0.96125 0.95472 1.70106 1.40519 1.01865 1.47327 0.85508 0.78943 0.78679 0.78548 1.19057 1.21466 1.15572 0.89010 0.90542 0.89292 0.81829 0.73530 0.74112 0.88764 0.89285 0.89591 0.84661 0.72621 0.85557 0.85695 0.94252 0.94183 0.94937 0.95190 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.45 71.24 0.67 -0.39 16 2 C -0.14 -2.41 5.90 -19.74 -0.12 -2.52 16 3 C 0.00 -0.07 9.20 22.25 0.20 0.14 16 4 C -0.70 -13.24 5.91 22.29 0.13 -13.11 16 5 S 2.73 45.70 5.48 -56.49 -0.31 45.39 16 6 N -1.24 -10.50 8.16 37.02 0.30 -10.20 16 7 O -0.99 -22.21 16.45 -128.00 -2.11 -24.31 16 8 O -0.99 -21.44 16.96 -128.00 -2.17 -23.61 16 9 C 0.03 0.61 5.87 -19.88 -0.12 0.49 16 10 C -0.15 -2.74 8.72 71.23 0.62 -2.11 16 11 C -0.18 -4.51 8.37 22.39 0.19 -4.32 16 12 C 0.20 4.35 6.41 38.15 0.24 4.59 16 13 N -0.66 -12.03 4.98 -303.50 -1.51 -13.54 16 14 C 0.51 13.21 7.63 87.66 0.67 13.88 16 15 O -0.55 -19.09 13.15 -3.04 -0.04 -19.13 16 16 C -0.13 -3.09 5.70 29.85 0.17 -2.92 16 17 C -0.08 -3.11 4.44 30.59 0.14 -2.97 16 18 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 19 C -0.54 -31.31 9.66 25.60 0.25 -31.06 16 20 H 0.02 1.31 7.99 -2.91 -0.02 1.28 16 21 C 0.00 -0.29 5.47 84.65 0.46 0.18 16 22 N -0.96 -60.81 13.96 21.45 0.30 -60.51 16 23 Si 0.96 42.61 27.47 68.60 1.88 44.49 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.23 -9.03 6.54 99.48 0.65 -8.38 16 27 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.57 6.99 -2.39 -0.02 0.56 16 29 H 0.09 0.62 8.09 -2.39 -0.02 0.60 16 30 H 0.16 2.19 7.33 -2.91 -0.02 2.17 16 31 H 0.43 1.94 8.96 -96.74 -0.87 1.07 16 32 H 0.43 2.09 8.96 -96.75 -0.87 1.23 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.24 5.32 -2.39 -0.01 1.23 16 35 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16 36 H 0.14 4.01 5.79 -2.91 -0.02 3.99 16 37 H 0.43 4.36 7.41 -92.71 -0.69 3.67 16 38 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 41 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 42 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 43 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -86.59 370.90 -1.42 -88.01 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -1.41 Total: 13.88 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 3.64 Total: -40.47 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -0.91 Total: -84.26 kcal Atomic # 8 Polarization: -62.73 SS G_CDS: -4.32 Total: -67.05 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Atomic # 16 Polarization: 45.70 SS G_CDS: -0.31 Total: 45.39 kcal Total: -86.59 -1.42 -88.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455567440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.422 kcal (2) G-P(sol) polarization free energy of solvation -86.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds