Wall clock time and date at job start Sat Apr 11 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30386 * 125.90575 * 2 1 4 4 N 1.39908 * 109.16290 * 179.76375 * 3 2 1 5 5 C 1.46502 * 125.77188 * 180.28465 * 4 3 2 6 6 C 1.34903 * 108.45922 * 0.39947 * 4 3 2 7 7 N 1.38660 * 126.42125 * 179.88218 * 6 4 3 8 8 C 1.34779 * 120.00076 * 307.99574 * 7 6 4 9 9 O 1.21278 * 119.99958 * 5.92938 * 8 7 6 10 10 C 1.50693 * 120.00040 * 185.93229 * 8 7 6 11 11 C 1.50700 * 109.47095 * 180.02562 * 10 8 7 12 12 C 1.38317 * 119.96667 * 270.01815 * 11 10 8 13 13 C 1.38282 * 120.14157 * 179.97438 * 12 11 10 14 14 C 1.38121 * 120.06921 * 359.77499 * 13 12 11 15 15 C 1.38857 * 119.92702 * 0.49987 * 14 13 12 16 16 O 1.35756 * 120.06872 * 179.74610 * 15 14 13 17 17 C 1.34820 * 116.99830 * 354.46322 * 16 15 14 18 18 H 1.07995 * 120.00303 * 5.02538 * 17 16 15 19 19 C 1.38664 * 119.99710 * 185.02227 * 17 16 15 20 20 N 1.31552 * 119.99962 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99582 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47573 * 60.00091 * 21 19 17 23 23 H 1.48506 * 109.46802 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47250 * 299.99766 * 21 19 17 25 25 C 1.38084 * 119.96497 * 89.99745 * 11 10 8 26 26 C 1.39069 * 107.14754 * 359.61293 * 6 4 3 27 27 C 1.43203 * 126.47883 * 180.24718 * 26 6 4 28 28 N 3.59298 * 90.82504 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46982 * 270.00295 * 1 2 3 30 30 H 1.09002 * 109.46866 * 29.99517 * 1 2 3 31 31 H 1.08997 * 109.47453 * 149.99864 * 1 2 3 32 32 H 1.09008 * 109.47168 * 274.39577 * 5 4 3 33 33 H 1.08997 * 109.47208 * 34.39101 * 5 4 3 34 34 H 1.08994 * 109.47152 * 154.39832 * 5 4 3 35 35 H 0.96995 * 120.00190 * 128.00524 * 7 6 4 36 36 H 1.09005 * 109.47549 * 59.99755 * 10 8 7 37 37 H 1.09002 * 109.47278 * 299.99639 * 10 8 7 38 38 H 1.08003 * 119.93371 * 359.97438 * 12 11 10 39 39 H 1.08004 * 119.96535 * 180.02562 * 13 12 11 40 40 H 1.07993 * 120.04140 * 180.27163 * 14 13 12 41 41 H 0.97005 * 119.99697 * 180.02562 * 20 19 17 42 42 H 1.07996 * 120.03723 * 0.04524 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2716 1.0561 0.0000 4 7 3.6114 0.6531 0.0054 5 6 4.7738 1.5446 0.0131 6 6 3.6518 -0.6953 -0.0001 7 7 4.7917 -1.4848 0.0004 8 6 5.7579 -1.2739 -0.9154 9 8 5.6817 -0.3278 -1.6704 10 6 6.9327 -2.2137 -1.0013 11 6 7.8612 -1.7583 -2.0975 12 6 7.6882 -2.2254 -3.3878 13 6 8.5377 -1.8095 -4.3966 14 6 9.5592 -0.9223 -4.1192 15 6 9.7391 -0.4559 -2.8237 16 8 10.7454 0.4122 -2.5468 17 6 11.6040 0.6932 -3.5476 18 1 11.4276 0.2985 -4.5373 19 6 12.7136 1.4890 -3.3061 20 7 12.9281 1.9701 -2.1007 21 14 13.9028 1.8788 -4.6929 22 1 13.1811 2.5895 -5.7789 23 1 14.9967 2.7418 -4.1790 24 1 14.4758 0.6157 -5.2235 25 6 8.8835 -0.8748 -1.8128 26 6 2.3358 -1.1450 -0.0001 27 6 1.9025 -2.5099 0.0000 28 7 1.5587 -3.5926 -0.0016 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 5.0191 1.8306 -1.0098 33 1 4.5433 2.4373 0.5945 34 1 5.6240 1.0293 0.4600 35 1 4.8938 -2.1889 0.6596 36 1 6.5774 -3.2206 -1.2205 37 1 7.4667 -2.2156 -0.0510 38 1 6.8879 -2.9164 -3.6081 39 1 8.3997 -2.1758 -5.4032 40 1 10.2197 -0.5944 -4.9082 41 1 13.7042 2.5271 -1.9319 42 1 9.0184 -0.5107 -0.8050 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461450210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:09 Heat of formation + Delta-G solvation = 49.694000 kcal Electronic energy + Delta-G solvation = -27865.988499 eV Core-core repulsion = 23813.116616 eV Total energy + Delta-G solvation = -4052.871883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.90808 -41.15670 -40.42696 -38.25128 -37.54759 -36.32544 -34.88877 -34.33475 -33.52976 -31.25677 -30.82558 -30.38557 -28.58723 -27.27673 -26.92321 -24.05775 -23.24071 -22.90821 -22.14547 -20.81320 -19.90654 -19.43501 -18.80158 -18.44948 -18.00704 -17.06851 -16.77776 -16.57290 -16.28111 -16.11817 -15.83603 -15.58061 -15.25809 -14.93173 -14.78855 -14.55633 -14.36735 -14.18523 -14.11560 -14.01939 -13.74946 -13.60440 -13.54414 -13.25116 -13.11187 -12.96886 -12.83058 -12.48188 -12.42200 -12.22820 -12.14546 -12.12828 -11.50395 -11.27312 -11.19906 -10.79266 -10.18304 -9.67719 -9.60990 -8.97944 -8.46748 -6.14528 0.11507 0.48802 0.75677 0.95864 1.02399 1.31153 1.34650 1.44845 1.50222 1.62601 1.84876 2.17678 2.46828 2.82969 2.93948 3.15534 3.41973 3.53863 3.66817 3.76808 3.91364 4.10312 4.16265 4.24608 4.29744 4.32053 4.40354 4.56181 4.58323 4.64542 4.67502 4.74789 4.81149 4.84772 4.97510 5.04993 5.13306 5.30770 5.40591 5.63937 5.67070 5.72292 5.75210 5.99324 6.03174 6.23712 6.44404 6.56367 6.84638 6.98403 7.79150 8.76117 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.002319 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.294214 B =12072.555508 C =12860.022652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.137 3.863 3 N -0.301 5.301 4 N -0.349 5.349 5 C 0.104 3.896 6 C 0.375 3.625 7 N -0.647 5.647 8 C 0.523 3.477 9 O -0.535 6.535 10 C -0.085 4.085 11 C -0.029 4.029 12 C -0.179 4.179 13 C -0.076 4.076 14 C -0.246 4.246 15 C 0.111 3.889 16 O -0.231 6.231 17 C -0.413 4.413 18 H 0.098 0.902 19 C -0.021 4.021 20 N -0.919 5.919 21 Si 1.015 2.985 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.183 4.183 26 C -0.212 4.212 27 C 0.317 3.683 28 N -0.461 5.461 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.444 0.556 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.115 0.885 41 H 0.272 0.728 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.061 -7.536 6.278 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 N -0.123 5.123 4 N -0.129 5.129 5 C -0.037 4.037 6 C 0.145 3.855 7 N -0.303 5.303 8 C 0.312 3.688 9 O -0.408 6.408 10 C -0.123 4.123 11 C -0.029 4.029 12 C -0.198 4.198 13 C -0.094 4.094 14 C -0.265 4.265 15 C 0.061 3.939 16 O -0.138 6.138 17 C -0.489 4.489 18 H 0.116 0.884 19 C -0.219 4.219 20 N -0.558 5.558 21 Si 0.835 3.165 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.182 1.182 25 C -0.203 4.203 26 C -0.231 4.231 27 C 0.003 3.997 28 N -0.139 5.139 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.129 0.871 34 H 0.110 0.890 35 H 0.287 0.713 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.198 -6.895 6.021 22.175 hybrid contribution 1.335 -0.041 -0.374 1.387 sum -18.863 -6.935 5.647 20.876 Atomic orbital electron populations 1.20474 0.83200 1.04825 1.05198 1.22768 0.98390 0.87372 0.94666 1.77276 0.85133 1.22458 1.27482 1.48707 1.06860 1.03665 1.53623 1.22116 0.83021 0.94156 1.04361 1.18018 0.87544 0.83167 0.96784 1.42923 1.16178 1.35931 1.35312 1.21431 0.83116 0.85777 0.78461 1.90834 1.77027 1.31065 1.41921 1.20700 0.91380 0.99809 1.00459 1.19073 0.93736 0.95215 0.94922 1.20965 1.01804 1.04790 0.92230 1.21099 0.93228 0.94966 1.00129 1.21305 1.03707 1.05218 0.96258 1.19894 0.89572 0.89858 0.94533 1.83927 1.35491 1.54747 1.39630 1.21729 1.03941 1.32841 0.90425 0.88437 1.26523 0.98783 0.95799 1.00784 1.70163 1.29292 1.33605 1.22702 0.84697 0.76624 0.79074 0.76148 1.18452 1.19531 1.18156 1.20226 0.98676 1.03590 0.97780 1.15519 0.90415 0.87341 1.29802 1.24190 0.93077 0.90824 0.91633 1.81312 1.08098 1.11533 1.12936 0.87737 0.88927 0.89542 0.90758 0.87148 0.89040 0.71324 0.83349 0.84303 0.83868 0.84230 0.86750 0.91860 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.26 71.23 0.73 -0.10 16 2 C 0.14 2.47 7.26 43.54 0.32 2.79 16 3 N -0.30 -6.60 12.48 -46.67 -0.58 -7.18 16 4 N -0.35 -7.61 3.92 -364.90 -1.43 -9.04 16 5 C 0.10 2.12 9.59 127.77 1.22 3.34 16 6 C 0.38 7.31 6.90 132.40 0.91 8.22 16 7 N -0.65 -9.64 5.22 -307.25 -1.60 -11.24 16 8 C 0.52 10.74 7.04 87.65 0.62 11.35 16 9 O -0.54 -16.21 13.29 -3.02 -0.04 -16.25 16 10 C -0.08 -1.45 5.83 29.10 0.17 -1.28 16 11 C -0.03 -0.86 4.37 -19.88 -0.09 -0.95 16 12 C -0.18 -5.34 9.70 22.30 0.22 -5.13 16 13 C -0.08 -2.62 10.04 22.25 0.22 -2.40 16 14 C -0.25 -10.74 9.17 22.39 0.21 -10.53 16 15 C 0.11 5.46 6.65 22.58 0.15 5.61 16 16 O -0.23 -13.76 9.76 -22.70 -0.22 -13.98 16 17 C -0.41 -24.03 9.49 67.92 0.64 -23.38 16 18 H 0.10 5.25 5.20 -2.91 -0.02 5.23 16 19 C -0.02 -1.21 5.49 84.84 0.47 -0.74 16 20 N -0.92 -55.90 13.67 21.62 0.30 -55.60 16 21 Si 1.02 42.76 29.55 68.60 2.03 44.79 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 25 C -0.18 -7.30 9.65 22.39 0.22 -7.08 16 26 C -0.21 -3.98 6.00 -21.07 -0.13 -4.11 16 27 C 0.32 6.17 15.44 88.33 1.36 7.53 16 28 N -0.46 -10.49 18.54 19.00 0.35 -10.14 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.82 7.98 -2.39 -0.02 0.80 16 32 H 0.07 1.87 7.39 -2.38 -0.02 1.85 16 33 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 1.74 7.34 -2.39 -0.02 1.72 16 35 H 0.44 3.23 8.82 -92.71 -0.82 2.41 16 36 H 0.15 1.47 8.09 -2.38 -0.02 1.45 16 37 H 0.14 1.64 8.08 -2.39 -0.02 1.62 16 38 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 39 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.11 5.14 5.64 -2.91 -0.02 5.12 16 41 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 42 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -81.79 376.05 6.32 -75.47 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.28 Total: 20.03 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 7.24 Total: -16.85 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -2.97 Total: -93.21 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.26 Total: -30.23 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -81.79 6.32 -75.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461450210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.168 kcal (2) G-P(sol) polarization free energy of solvation -81.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds