Wall clock time and date at job start Sat Apr 11 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47383 * 2 1 4 4 C 1.50698 * 109.47382 * 240.00048 * 2 1 3 5 5 O 1.21286 * 119.99806 * 245.49181 * 4 2 1 6 6 N 1.34773 * 120.00311 * 65.48922 * 4 2 1 7 7 C 1.46501 * 120.00472 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47321 * 180.02562 * 7 6 4 9 9 H 1.09009 * 109.46535 * 295.00044 * 8 7 6 10 10 C 1.52990 * 109.47164 * 174.99891 * 8 7 6 11 11 O 1.42899 * 109.47345 * 304.99673 * 10 8 7 12 12 N 1.46495 * 109.47229 * 54.99535 * 8 7 6 13 13 C 1.36946 * 120.00078 * 205.00252 * 12 8 7 14 14 H 1.07996 * 119.99544 * 359.97438 * 13 12 8 15 15 C 1.38811 * 119.99871 * 180.02562 * 13 12 8 16 16 N 1.31613 * 120.00222 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99677 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47476 * 59.99254 * 17 15 13 19 19 H 1.48503 * 109.47088 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46707 * 299.99330 * 17 15 13 21 21 C 1.50706 * 109.47127 * 120.00181 * 2 1 3 22 22 C 1.38235 * 119.98284 * 5.37201 * 21 2 1 23 23 C 1.38218 * 120.01107 * 179.72559 * 22 21 2 24 24 C 1.38354 * 119.98531 * 0.55299 * 23 22 21 25 25 Cl 1.73599 * 120.01176 * 179.70177 * 24 23 22 26 26 C 1.38342 * 119.97328 * 359.72371 * 24 23 22 27 27 C 1.38215 * 119.98692 * 359.97438 * 26 24 23 28 28 H 1.08997 * 109.47462 * 299.99890 * 1 2 3 29 29 H 1.08999 * 109.47218 * 60.00223 * 1 2 3 30 30 H 1.09000 * 109.47194 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47036 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46762 * 300.00057 * 3 2 1 33 33 H 1.09001 * 109.46480 * 60.00112 * 3 2 1 34 34 H 0.97006 * 119.99909 * 0.02562 * 6 4 2 35 35 H 1.08999 * 109.47040 * 300.00095 * 7 6 4 36 36 H 1.08995 * 109.47047 * 59.99730 * 7 6 4 37 37 H 1.09004 * 109.47053 * 64.99749 * 10 8 7 38 38 H 1.09001 * 109.47203 * 184.99394 * 10 8 7 39 39 H 0.96705 * 114.00203 * 180.02562 * 11 10 8 40 40 H 0.96999 * 120.00511 * 25.00435 * 12 8 7 41 41 H 0.97003 * 120.00410 * 180.02562 * 16 15 13 42 42 H 1.08008 * 119.99817 * 0.02562 * 22 21 2 43 43 H 1.08001 * 120.00834 * 180.27034 * 23 22 21 44 44 H 1.08003 * 120.01281 * 179.97438 * 26 24 23 45 45 H 1.08005 * 119.99688 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6453 -1.7513 -1.1219 6 7 1.8005 -0.1891 -2.4515 7 6 2.2884 -0.8799 -3.6477 8 6 1.8949 -0.0830 -4.8931 9 1 0.8091 -0.0719 -4.9891 10 6 2.5099 -0.7366 -6.1321 11 8 3.9228 -0.8568 -5.9556 12 7 2.3883 1.2908 -4.7698 13 6 1.7685 2.3046 -5.4507 14 1 0.9163 2.0911 -6.0787 15 6 2.2364 3.6063 -5.3343 16 7 3.2753 3.8663 -4.5692 17 14 1.3906 4.9892 -6.2624 18 1 -0.0283 5.0782 -5.8333 19 1 2.0769 6.2734 -5.9707 20 1 1.4504 4.7156 -7.7208 21 6 2.0323 -0.7105 1.2305 22 6 1.1387 -1.3319 2.0826 23 6 1.5992 -1.9885 3.2083 24 6 2.9539 -2.0140 3.4882 25 17 3.5324 -2.8318 4.9060 26 6 3.8472 -1.3869 2.6381 27 6 3.3860 -0.7360 1.5094 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.3106 0.6436 -2.5383 35 1 3.3739 -0.9663 -3.6000 36 1 1.8467 -1.8751 -3.6980 37 1 2.0759 -1.7264 -6.2740 38 1 2.3042 -0.1208 -7.0077 39 1 4.3796 -1.2636 -6.7047 40 1 3.1540 1.4825 -4.2060 41 1 3.6021 4.7759 -4.4876 42 1 0.0807 -1.3086 1.8662 43 1 0.9014 -2.4778 3.8717 44 1 4.9048 -1.4060 2.8562 45 1 4.0832 -0.2461 0.8458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486029681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:18 Heat of formation + Delta-G solvation = -63.705491 kcal Electronic energy + Delta-G solvation = -27602.503146 eV Core-core repulsion = 23645.821385 eV Total energy + Delta-G solvation = -3956.681760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.55818 -38.80283 -37.19632 -36.61876 -35.04223 -34.89895 -33.45024 -31.36798 -31.28921 -29.57803 -28.27830 -27.46749 -25.45875 -23.88456 -23.58105 -22.60369 -21.58533 -20.11520 -19.13298 -17.74629 -17.37640 -16.67569 -16.58347 -15.91597 -15.53550 -15.13705 -14.73114 -14.65365 -14.28903 -14.15154 -13.70290 -13.59129 -13.48459 -13.41810 -13.13877 -12.91918 -12.51724 -12.35497 -12.23846 -12.02044 -11.93818 -11.80405 -11.50205 -11.41810 -11.17245 -11.00444 -10.91220 -10.87130 -10.70770 -10.58510 -10.16331 -9.82246 -9.46548 -9.34635 -9.07298 -9.01271 -8.62303 -8.57107 -7.07667 -5.85231 -3.15644 1.06351 1.25357 2.02346 2.95329 3.35783 3.39067 3.41581 3.42751 3.78480 4.41956 4.49002 4.61189 4.79940 4.88073 4.90610 4.98814 5.08010 5.25626 5.37683 5.38268 5.48916 5.53709 5.56052 5.60323 5.66434 5.79733 5.81886 5.87579 5.88339 5.99968 6.00611 6.02757 6.14584 6.17340 6.29930 6.36528 6.48496 6.50974 6.71549 6.73145 6.91310 7.58297 7.95160 8.18133 8.31714 8.59154 9.44082 9.99107 10.35920 11.36063 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.002627 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.688391 B =10656.086517 C =11444.253264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C -0.141 4.141 4 C 0.520 3.480 5 O -0.545 6.545 6 N -0.709 5.709 7 C 0.119 3.881 8 C 0.166 3.834 9 H 0.065 0.935 10 C 0.059 3.941 11 O -0.560 6.560 12 N -0.712 5.712 13 C -0.249 4.249 14 H 0.069 0.931 15 C -0.006 4.006 16 N -0.925 5.925 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.287 1.287 21 C -0.044 4.044 22 C -0.105 4.105 23 C -0.113 4.113 24 C -0.038 4.038 25 Cl -0.081 7.081 26 C -0.110 4.110 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.026 0.974 38 H 0.048 0.952 39 H 0.364 0.636 40 H 0.389 0.611 41 H 0.256 0.744 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.679 -10.308 12.576 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.048 4.048 3 C -0.199 4.199 4 C 0.305 3.695 5 O -0.423 6.423 6 N -0.360 5.360 7 C -0.005 4.005 8 C 0.055 3.945 9 H 0.083 0.917 10 C -0.022 4.022 11 O -0.363 6.363 12 N -0.354 5.354 13 C -0.380 4.380 14 H 0.087 0.913 15 C -0.203 4.203 16 N -0.572 5.572 17 Si 0.736 3.264 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.214 1.214 21 C -0.045 4.045 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.064 4.064 25 Cl -0.052 7.052 26 C -0.128 4.128 27 C -0.097 4.097 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.246 0.754 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.208 0.792 40 H 0.223 0.777 41 H 0.066 0.934 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.438 -10.693 13.247 17.593 hybrid contribution -0.146 0.899 -1.059 1.396 sum -4.584 -9.794 12.188 16.294 Atomic orbital electron populations 1.21953 0.92045 1.02674 1.03431 1.19753 0.97387 0.96541 0.91075 1.21932 1.02119 0.92275 1.03556 1.20197 0.79735 0.85154 0.84384 1.90689 1.41187 1.23646 1.86757 1.45968 1.57313 1.27502 1.05255 1.21537 1.00431 0.94646 0.83924 1.20586 0.96664 0.86647 0.90652 0.91732 1.23032 0.81392 0.97125 1.00673 1.86569 1.20053 1.84896 1.44808 1.42358 1.36940 1.00020 1.56092 1.19162 1.09963 0.86977 1.21906 0.91298 1.24729 0.98099 0.97367 1.00129 1.69659 1.25997 1.19688 1.41860 0.86317 0.78642 0.81890 0.79539 1.21251 1.21711 1.21361 1.19460 0.93501 0.96992 0.94527 1.21093 1.00211 0.97123 0.93853 1.20957 0.93479 1.00478 0.98268 1.20899 0.94191 1.00518 0.90833 1.98354 1.89216 1.78094 1.39555 1.20991 0.99590 0.97963 0.94284 1.20948 0.95282 0.97742 0.95686 0.91023 0.91124 0.91783 0.91633 0.90466 0.91436 0.75435 0.90646 0.92254 0.95579 0.93338 0.79156 0.77667 0.93367 0.84714 0.85171 0.85076 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 7.10 37.15 0.26 -1.21 16 2 C -0.04 -0.57 0.72 -156.81 -0.11 -0.68 16 3 C -0.14 -1.77 8.07 37.16 0.30 -1.47 16 4 C 0.52 8.40 6.35 -10.99 -0.07 8.33 16 5 O -0.55 -10.53 15.53 5.55 0.09 -10.45 16 6 N -0.71 -11.53 5.22 -60.30 -0.31 -11.84 16 7 C 0.12 2.06 5.12 -4.04 -0.02 2.04 16 8 C 0.17 3.04 2.84 -67.94 -0.19 2.85 16 9 H 0.06 1.13 8.08 -51.92 -0.42 0.71 16 10 C 0.06 1.00 6.85 37.15 0.25 1.26 16 11 O -0.56 -9.83 12.64 -35.23 -0.45 -10.27 16 12 N -0.71 -16.31 4.51 -53.43 -0.24 -16.55 16 13 C -0.25 -6.32 9.93 -15.06 -0.15 -6.47 16 14 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 15 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 16 N -0.92 -26.34 13.06 55.49 0.72 -25.62 16 17 Si 0.91 21.13 29.55 -169.99 -5.02 16.11 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.04 -0.57 4.24 -104.62 -0.44 -1.01 16 22 C -0.10 -1.17 8.99 -39.59 -0.36 -1.53 16 23 C -0.11 -1.23 9.83 -39.55 -0.39 -1.62 16 24 C -0.04 -0.44 6.32 -39.50 -0.25 -0.69 16 25 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.36 16 26 C -0.11 -1.33 9.83 -39.55 -0.39 -1.72 16 27 C -0.08 -1.03 8.36 -39.59 -0.33 -1.37 16 28 H 0.07 0.60 7.76 -51.93 -0.40 0.20 16 29 H 0.07 0.72 7.96 -51.93 -0.41 0.30 16 30 H 0.06 0.64 7.26 -51.93 -0.38 0.26 16 31 H 0.06 0.87 7.09 -51.93 -0.37 0.50 16 32 H 0.08 1.05 7.27 -51.93 -0.38 0.67 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.41 6.63 7.05 -40.82 -0.29 6.34 16 35 H 0.08 1.49 7.39 -51.93 -0.38 1.11 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.36 4.60 9.12 45.56 0.42 5.01 16 40 H 0.39 9.92 7.80 -40.82 -0.32 9.60 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.14 1.21 5.91 -52.48 -0.31 0.90 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 45 H 0.13 1.74 7.24 -52.48 -0.38 1.36 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -31.11 385.63 -8.59 -39.71 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -5.71 Total: 19.02 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.98 Total: -3.56 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.17 Total: -54.01 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.36 Total: -20.72 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.11 -8.59 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486029681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.999 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds