Wall clock time and date at job start Sat Apr 11 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47383 * 2 1 4 4 C 1.50698 * 109.47382 * 240.00048 * 2 1 3 5 5 O 1.21286 * 119.99806 * 245.49181 * 4 2 1 6 6 N 1.34773 * 120.00311 * 65.48922 * 4 2 1 7 7 C 1.46501 * 120.00472 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47321 * 180.02562 * 7 6 4 9 9 H 1.09009 * 109.46535 * 295.00044 * 8 7 6 10 10 C 1.52990 * 109.47164 * 174.99891 * 8 7 6 11 11 O 1.42899 * 109.47345 * 304.99673 * 10 8 7 12 12 N 1.46495 * 109.47229 * 54.99535 * 8 7 6 13 13 C 1.36946 * 120.00078 * 205.00252 * 12 8 7 14 14 H 1.07996 * 119.99544 * 359.97438 * 13 12 8 15 15 C 1.38811 * 119.99871 * 180.02562 * 13 12 8 16 16 N 1.31613 * 120.00222 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99677 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47476 * 59.99254 * 17 15 13 19 19 H 1.48503 * 109.47088 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46707 * 299.99330 * 17 15 13 21 21 C 1.50706 * 109.47127 * 120.00181 * 2 1 3 22 22 C 1.38235 * 119.98284 * 5.37201 * 21 2 1 23 23 C 1.38218 * 120.01107 * 179.72559 * 22 21 2 24 24 C 1.38354 * 119.98531 * 0.55299 * 23 22 21 25 25 Cl 1.73599 * 120.01176 * 179.70177 * 24 23 22 26 26 C 1.38342 * 119.97328 * 359.72371 * 24 23 22 27 27 C 1.38215 * 119.98692 * 359.97438 * 26 24 23 28 28 H 1.08997 * 109.47462 * 299.99890 * 1 2 3 29 29 H 1.08999 * 109.47218 * 60.00223 * 1 2 3 30 30 H 1.09000 * 109.47194 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47036 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46762 * 300.00057 * 3 2 1 33 33 H 1.09001 * 109.46480 * 60.00112 * 3 2 1 34 34 H 0.97006 * 119.99909 * 0.02562 * 6 4 2 35 35 H 1.08999 * 109.47040 * 300.00095 * 7 6 4 36 36 H 1.08995 * 109.47047 * 59.99730 * 7 6 4 37 37 H 1.09004 * 109.47053 * 64.99749 * 10 8 7 38 38 H 1.09001 * 109.47203 * 184.99394 * 10 8 7 39 39 H 0.96705 * 114.00203 * 180.02562 * 11 10 8 40 40 H 0.96999 * 120.00511 * 25.00435 * 12 8 7 41 41 H 0.97003 * 120.00410 * 180.02562 * 16 15 13 42 42 H 1.08008 * 119.99817 * 0.02562 * 22 21 2 43 43 H 1.08001 * 120.00834 * 180.27034 * 23 22 21 44 44 H 1.08003 * 120.01281 * 179.97438 * 26 24 23 45 45 H 1.08005 * 119.99688 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6453 -1.7513 -1.1219 6 7 1.8005 -0.1891 -2.4515 7 6 2.2884 -0.8799 -3.6477 8 6 1.8949 -0.0830 -4.8931 9 1 0.8091 -0.0719 -4.9891 10 6 2.5099 -0.7366 -6.1321 11 8 3.9228 -0.8568 -5.9556 12 7 2.3883 1.2908 -4.7698 13 6 1.7685 2.3046 -5.4507 14 1 0.9163 2.0911 -6.0787 15 6 2.2364 3.6063 -5.3343 16 7 3.2753 3.8663 -4.5692 17 14 1.3906 4.9892 -6.2624 18 1 -0.0283 5.0782 -5.8333 19 1 2.0769 6.2734 -5.9707 20 1 1.4504 4.7156 -7.7208 21 6 2.0323 -0.7105 1.2305 22 6 1.1387 -1.3319 2.0826 23 6 1.5992 -1.9885 3.2083 24 6 2.9539 -2.0140 3.4882 25 17 3.5324 -2.8318 4.9060 26 6 3.8472 -1.3869 2.6381 27 6 3.3860 -0.7360 1.5094 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.3106 0.6436 -2.5383 35 1 3.3739 -0.9663 -3.6000 36 1 1.8467 -1.8751 -3.6980 37 1 2.0759 -1.7264 -6.2740 38 1 2.3042 -0.1208 -7.0077 39 1 4.3796 -1.2636 -6.7047 40 1 3.1540 1.4825 -4.2060 41 1 3.6021 4.7759 -4.4876 42 1 0.0807 -1.3086 1.8662 43 1 0.9014 -2.4778 3.8717 44 1 4.9048 -1.4060 2.8562 45 1 4.0832 -0.2461 0.8458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486029681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:17 Heat of formation + Delta-G solvation = -85.066937 kcal Electronic energy + Delta-G solvation = -27603.429447 eV Core-core repulsion = 23645.821385 eV Total energy + Delta-G solvation = -3957.608062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66330 -39.91353 -38.59980 -37.54959 -36.37204 -36.08882 -35.10185 -33.06060 -32.18515 -30.63498 -29.87370 -28.37572 -26.79514 -25.62037 -24.78262 -23.50671 -22.68902 -21.60873 -20.32864 -19.38992 -18.46346 -18.14669 -17.77481 -17.24805 -16.69653 -16.43736 -16.00937 -15.91245 -15.56275 -15.30807 -15.17336 -14.86500 -14.59986 -14.56153 -14.44899 -14.27070 -13.76823 -13.48036 -13.31377 -13.20880 -12.98530 -12.88332 -12.72082 -12.69373 -12.61466 -12.39453 -12.27451 -12.07400 -11.98092 -11.83859 -11.70818 -11.60750 -10.98762 -10.72591 -10.65397 -9.99368 -9.94250 -9.55216 -8.97960 -7.87287 -5.16351 0.13519 0.35391 1.14540 1.52041 1.53207 1.59165 1.67653 2.25035 2.59585 2.74440 3.43880 3.44907 3.61972 3.69317 3.86484 3.92218 3.95435 4.02518 4.06082 4.07287 4.37365 4.45506 4.49169 4.57507 4.61522 4.68850 4.73015 4.79555 4.82583 4.86512 4.92002 4.99040 5.01036 5.17040 5.20863 5.24615 5.28043 5.33203 5.53511 5.58343 5.58882 5.82585 6.30968 6.63465 7.06190 7.28842 7.39670 8.11635 8.37479 9.34933 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.002627 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.688391 B =10656.086517 C =11444.253264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.036 4.036 3 C -0.137 4.137 4 C 0.518 3.482 5 O -0.580 6.580 6 N -0.707 5.707 7 C 0.130 3.870 8 C 0.162 3.838 9 H 0.080 0.920 10 C 0.063 3.937 11 O -0.584 6.584 12 N -0.721 5.721 13 C -0.237 4.237 14 H 0.080 0.920 15 C -0.068 4.068 16 N -0.964 5.964 17 Si 0.966 3.034 18 H -0.274 1.274 19 H -0.303 1.303 20 H -0.284 1.284 21 C -0.059 4.059 22 C -0.103 4.103 23 C -0.111 4.111 24 C -0.046 4.046 25 Cl -0.072 7.072 26 C -0.118 4.118 27 C -0.098 4.098 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.410 0.590 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.385 0.615 40 H 0.373 0.627 41 H 0.248 0.752 42 H 0.161 0.839 43 H 0.155 0.845 44 H 0.139 0.861 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.996 -11.256 13.015 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.039 4.039 3 C -0.194 4.194 4 C 0.305 3.695 5 O -0.460 6.460 6 N -0.358 5.358 7 C 0.006 3.994 8 C 0.053 3.947 9 H 0.098 0.902 10 C -0.018 4.018 11 O -0.391 6.391 12 N -0.360 5.360 13 C -0.369 4.369 14 H 0.098 0.902 15 C -0.261 4.261 16 N -0.614 5.614 17 Si 0.796 3.204 18 H -0.200 1.200 19 H -0.230 1.230 20 H -0.211 1.211 21 C -0.060 4.060 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.072 4.072 25 Cl -0.043 7.043 26 C -0.137 4.137 27 C -0.116 4.116 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.247 0.753 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.233 0.767 40 H 0.204 0.796 41 H 0.057 0.943 42 H 0.178 0.822 43 H 0.173 0.827 44 H 0.157 0.843 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.791 -11.685 13.652 19.210 hybrid contribution 0.613 1.056 -1.184 1.701 sum -6.177 -10.629 12.468 17.510 Atomic orbital electron populations 1.21997 0.89646 1.03526 1.04729 1.19716 0.99166 0.95740 0.89314 1.21890 1.01100 0.92528 1.03921 1.20839 0.78816 0.84750 0.85121 1.90665 1.42688 1.25366 1.87259 1.45964 1.57142 1.27409 1.05298 1.21339 0.98780 0.95306 0.83997 1.20832 0.97437 0.84626 0.91841 0.90210 1.22896 0.81346 0.98720 0.98790 1.86525 1.20634 1.85425 1.46480 1.42449 1.36312 1.01609 1.55678 1.19550 1.09373 0.87422 1.20506 0.90181 1.25430 0.99195 0.99691 1.01742 1.69824 1.28019 1.19363 1.44178 0.85336 0.78006 0.78752 0.78316 1.20022 1.23025 1.21105 1.19566 0.93605 0.97849 0.94938 1.21381 1.01206 0.96124 0.93319 1.21285 0.93496 0.99839 0.98351 1.21054 0.94679 1.00451 0.91049 1.98356 1.89225 1.77836 1.38921 1.21109 1.00328 0.98049 0.94209 1.20967 0.95694 0.98721 0.96222 0.88540 0.91089 0.91104 0.93289 0.91743 0.89265 0.75321 0.93478 0.90720 0.91799 0.94530 0.76741 0.79561 0.94319 0.82156 0.82691 0.84315 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.10 71.98 0.51 -2.07 16 2 C -0.04 -0.90 0.72 -53.67 -0.04 -0.94 16 3 C -0.14 -3.45 8.07 71.98 0.58 -2.87 16 4 C 0.52 16.76 6.35 87.66 0.56 17.32 16 5 O -0.58 -22.70 15.53 -3.05 -0.05 -22.74 16 6 N -0.71 -23.01 5.22 -463.07 -2.42 -25.43 16 7 C 0.13 4.48 5.12 86.38 0.44 4.92 16 8 C 0.16 5.77 2.84 44.99 0.13 5.90 16 9 H 0.08 2.62 8.08 -2.38 -0.02 2.60 16 10 C 0.06 2.03 6.85 71.98 0.49 2.53 16 11 O -0.58 -20.06 12.64 -148.98 -1.88 -21.94 16 12 N -0.72 -33.03 4.51 -322.95 -1.46 -34.48 16 13 C -0.24 -11.90 9.93 84.03 0.83 -11.06 16 14 H 0.08 3.79 7.83 -2.91 -0.02 3.76 16 15 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 16 N -0.96 -56.16 13.06 21.65 0.28 -55.88 16 17 Si 0.97 43.53 29.55 68.60 2.03 45.56 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C -0.06 -1.47 4.24 -19.86 -0.08 -1.55 16 22 C -0.10 -2.05 8.99 22.26 0.20 -1.85 16 23 C -0.11 -2.15 9.83 22.29 0.22 -1.94 16 24 C -0.05 -1.01 6.32 22.32 0.14 -0.87 16 25 Cl -0.07 -1.43 28.96 -2.72 -0.08 -1.50 16 26 C -0.12 -2.86 9.83 22.29 0.22 -2.64 16 27 C -0.10 -2.63 8.36 22.26 0.19 -2.44 16 28 H 0.10 1.29 7.76 -2.39 -0.02 1.27 16 29 H 0.07 1.30 7.96 -2.39 -0.02 1.28 16 30 H 0.07 1.20 7.26 -2.39 -0.02 1.19 16 31 H 0.05 1.37 7.09 -2.39 -0.02 1.35 16 32 H 0.06 1.77 7.27 -2.39 -0.02 1.76 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.41 13.28 7.05 -92.70 -0.65 12.62 16 35 H 0.05 1.90 7.39 -2.39 -0.02 1.88 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.38 9.27 9.12 -74.05 -0.68 8.59 16 40 H 0.37 19.48 7.80 -92.71 -0.72 18.75 16 41 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 42 H 0.16 2.31 5.91 -2.91 -0.02 2.29 16 43 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 45 H 0.12 3.33 7.24 -2.91 -0.02 3.30 16 Total: -1.00 -67.53 385.63 0.27 -67.26 By element: Atomic # 1 Polarization: 50.89 SS G_CDS: -1.01 Total: 49.88 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 4.86 Total: -0.73 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -3.59 Total: -115.79 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -1.93 Total: -44.68 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.50 kcal Total: -67.53 0.27 -67.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486029681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.806 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds