Wall clock time and date at job start Sat Apr 11 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46797 * 2 1 4 4 C 1.50695 * 109.47100 * 119.99474 * 2 1 3 5 5 O 1.21280 * 119.99825 * 119.99982 * 4 2 1 6 6 N 1.34776 * 120.00252 * 300.00426 * 4 2 1 7 7 C 1.46501 * 119.99681 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47085 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.46812 * 64.99732 * 8 7 6 10 10 C 1.52997 * 109.47452 * 184.99949 * 8 7 6 11 11 O 1.42906 * 109.47007 * 54.99567 * 10 8 7 12 12 N 1.46506 * 109.46831 * 305.00177 * 8 7 6 13 13 C 1.36936 * 119.99838 * 154.99889 * 12 8 7 14 14 H 1.07999 * 120.00085 * 0.02562 * 13 12 8 15 15 C 1.38815 * 119.99824 * 179.97438 * 13 12 8 16 16 N 1.31616 * 119.99954 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99939 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46941 * 90.00290 * 17 15 13 19 19 H 1.48500 * 109.47176 * 210.00256 * 17 15 13 20 20 H 1.48494 * 109.47445 * 330.00360 * 17 15 13 21 21 C 1.50697 * 109.47025 * 240.00048 * 2 1 3 22 22 C 1.38231 * 120.00892 * 359.97438 * 21 2 1 23 23 C 1.38218 * 120.01249 * 179.97438 * 22 21 2 24 24 C 1.38261 * 120.02928 * 0.04173 * 23 22 21 25 25 C 1.38195 * 120.01096 * 359.97438 * 24 23 22 26 26 C 1.38330 * 120.00285 * 179.72766 * 21 2 1 27 27 Cl 1.73598 * 120.01597 * 359.97050 * 26 21 2 28 28 H 1.09004 * 109.47185 * 300.00099 * 1 2 3 29 29 H 1.08998 * 109.46730 * 59.99995 * 1 2 3 30 30 H 1.09001 * 109.46827 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47097 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47485 * 299.99543 * 3 2 1 33 33 H 1.09004 * 109.47334 * 59.99992 * 3 2 1 34 34 H 0.96998 * 120.00301 * 359.97438 * 6 4 2 35 35 H 1.09000 * 109.47818 * 59.99929 * 7 6 4 36 36 H 1.09001 * 109.47363 * 299.99334 * 7 6 4 37 37 H 1.08998 * 109.47192 * 174.99730 * 10 8 7 38 38 H 1.09000 * 109.46875 * 295.00133 * 10 8 7 39 39 H 0.96700 * 113.99791 * 179.97438 * 11 10 8 40 40 H 0.97000 * 119.99812 * 334.99233 * 12 8 7 41 41 H 0.97000 * 120.00432 * 179.97438 * 16 15 13 42 42 H 1.07994 * 119.99220 * 0.02562 * 22 21 2 43 43 H 1.07999 * 119.98525 * 180.02562 * 23 22 21 44 44 H 1.07998 * 119.99573 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.00480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1947 -0.9407 3.6507 8 6 1.6842 -0.2198 4.9000 9 1 0.5979 -0.2967 4.9455 10 6 2.2938 -0.8651 6.1462 11 8 3.7183 -0.8686 6.0323 12 7 2.0718 1.1919 4.8418 13 6 1.3439 2.1304 5.5233 14 1 0.4843 1.8299 6.1041 15 6 1.7114 3.4679 5.4685 16 7 2.7592 3.8340 4.7612 17 14 0.7181 4.7482 6.3976 18 1 1.2734 4.9085 7.7655 19 1 0.7885 6.0461 5.6795 20 1 -0.6973 4.3079 6.4865 21 6 2.0324 -0.7104 -1.2304 22 6 1.1342 -1.2362 -2.1402 23 6 1.5949 -1.8873 -3.2690 24 6 2.9540 -2.0139 -3.4886 25 6 3.8529 -1.4889 -2.5797 26 6 3.3923 -0.8319 -1.4523 27 17 4.5209 -0.1655 -0.3139 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.1493 0.5390 2.5436 35 1 3.2847 -0.9412 3.6510 36 1 1.8309 -1.9682 3.6507 37 1 2.0013 -0.2972 7.0294 38 1 1.9341 -1.8899 6.2375 39 1 4.1723 -1.2636 6.7892 40 1 2.8440 1.4616 4.3205 41 1 3.0159 4.7686 4.7226 42 1 0.0725 -1.1376 -1.9693 43 1 0.8928 -2.2977 -3.9797 44 1 3.3134 -2.5231 -4.3706 45 1 4.9146 -1.5874 -2.7515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486056902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:28 Heat of formation + Delta-G solvation = -76.092087 kcal Electronic energy + Delta-G solvation = -28277.749668 eV Core-core repulsion = 24320.530784 eV Total energy + Delta-G solvation = -3957.218884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.63130 -39.83285 -38.56306 -37.34201 -36.37680 -36.27236 -35.09925 -33.06863 -31.72574 -30.78697 -29.90707 -28.41277 -26.78656 -25.63046 -24.82189 -23.28552 -22.67060 -21.59986 -20.34011 -19.40323 -18.39710 -18.15575 -17.71374 -17.18812 -16.69442 -16.43866 -16.00078 -15.89426 -15.60777 -15.20111 -15.10047 -14.87788 -14.72515 -14.66078 -14.50021 -14.27672 -13.76653 -13.36076 -13.23676 -13.11733 -13.00332 -12.80377 -12.72883 -12.66549 -12.65821 -12.30717 -12.22362 -12.10534 -11.97170 -11.84091 -11.70972 -11.12210 -10.99442 -10.73462 -10.59586 -9.89940 -9.82253 -9.52639 -8.98856 -7.87789 -5.17214 0.26074 0.34673 1.31699 1.50458 1.51301 1.59398 1.76564 2.32084 2.58904 2.79808 3.43301 3.44274 3.61168 3.72494 3.89934 3.91875 4.02842 4.06969 4.07667 4.21782 4.44315 4.45570 4.51986 4.56567 4.60715 4.69117 4.72193 4.77519 4.83098 4.85882 4.92665 4.99948 5.02658 5.17650 5.24460 5.26574 5.37578 5.48619 5.51914 5.54970 5.61033 5.93945 6.30047 6.67983 7.05362 7.35787 7.38463 8.10652 8.36720 9.34698 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014409 B = 0.003432 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.792787 B = 8157.203434 C = 8766.501403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.037 4.037 3 C -0.153 4.153 4 C 0.521 3.479 5 O -0.568 6.568 6 N -0.710 5.710 7 C 0.134 3.866 8 C 0.162 3.838 9 H 0.080 0.920 10 C 0.064 3.936 11 O -0.584 6.584 12 N -0.721 5.721 13 C -0.236 4.236 14 H 0.081 0.919 15 C -0.069 4.069 16 N -0.964 5.964 17 Si 0.967 3.033 18 H -0.296 1.296 19 H -0.301 1.301 20 H -0.265 1.265 21 C -0.070 4.070 22 C -0.109 4.109 23 C -0.116 4.116 24 C -0.108 4.108 25 C -0.130 4.130 26 C -0.031 4.031 27 Cl -0.081 7.081 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.407 0.593 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.384 0.616 40 H 0.372 0.628 41 H 0.247 0.753 42 H 0.158 0.842 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 -12.506 -15.112 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.041 4.041 3 C -0.210 4.210 4 C 0.307 3.693 5 O -0.448 6.448 6 N -0.361 5.361 7 C 0.009 3.991 8 C 0.053 3.947 9 H 0.098 0.902 10 C -0.017 4.017 11 O -0.391 6.391 12 N -0.361 5.361 13 C -0.368 4.368 14 H 0.099 0.901 15 C -0.262 4.262 16 N -0.615 5.615 17 Si 0.797 3.203 18 H -0.223 1.223 19 H -0.228 1.228 20 H -0.190 1.190 21 C -0.071 4.071 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.126 4.126 25 C -0.148 4.148 26 C -0.058 4.058 27 Cl -0.052 7.052 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.244 0.756 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.232 0.768 40 H 0.203 0.797 41 H 0.056 0.944 42 H 0.175 0.825 43 H 0.180 0.820 44 H 0.178 0.822 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.494 -12.784 -15.525 20.848 hybrid contribution 0.539 1.314 1.607 2.144 sum -4.955 -11.470 -13.919 18.704 Atomic orbital electron populations 1.21986 0.89701 1.03476 1.04524 1.19677 0.99092 0.95614 0.89677 1.22146 1.02805 0.92719 1.03362 1.20645 0.79526 0.84128 0.84967 1.90657 1.38831 1.28101 1.87169 1.45902 1.53176 1.31974 1.05039 1.21292 0.98431 0.95444 0.83944 1.20836 0.97707 0.84369 0.91800 0.90243 1.22895 0.80995 0.98856 0.98945 1.86538 1.19518 1.85405 1.47632 1.42471 1.33886 1.01162 1.58592 1.19602 1.07259 0.87845 1.22066 0.90086 1.25454 0.99424 0.99195 1.02089 1.69849 1.29283 1.15873 1.46476 0.85243 0.78846 0.78763 0.77458 1.22343 1.22773 1.18960 1.19416 0.91627 0.99849 0.96215 1.21452 1.00553 0.97042 0.93642 1.21618 0.96236 0.98017 0.97460 1.21481 0.93137 0.98662 0.99291 1.21277 1.01636 0.98615 0.93307 1.21045 0.90467 1.01544 0.92725 1.98360 1.61701 1.83616 1.61551 0.91377 0.88600 0.90992 0.92166 0.89776 0.92219 0.75644 0.93821 0.90812 0.94467 0.91765 0.76777 0.79662 0.94379 0.82487 0.82022 0.82236 0.84513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 7.03 71.98 0.51 -2.37 16 2 C -0.04 -1.04 0.60 -53.67 -0.03 -1.07 16 3 C -0.15 -4.53 8.12 71.98 0.58 -3.94 16 4 C 0.52 18.13 5.39 87.66 0.47 18.61 16 5 O -0.57 -23.08 13.91 -3.03 -0.04 -23.12 16 6 N -0.71 -24.92 5.17 -463.05 -2.40 -27.32 16 7 C 0.13 4.87 5.12 86.38 0.44 5.31 16 8 C 0.16 6.06 2.84 44.99 0.13 6.19 16 9 H 0.08 2.74 8.08 -2.39 -0.02 2.72 16 10 C 0.06 2.14 6.86 71.98 0.49 2.63 16 11 O -0.58 -21.01 12.64 -148.98 -1.88 -22.89 16 12 N -0.72 -34.47 4.51 -322.92 -1.46 -35.92 16 13 C -0.24 -12.22 9.93 84.03 0.83 -11.38 16 14 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 15 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 16 N -0.96 -57.86 13.06 21.65 0.28 -57.58 16 17 Si 0.97 44.57 29.55 68.60 2.03 46.60 16 18 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 19 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 21 C -0.07 -1.87 4.37 -19.85 -0.09 -1.96 16 22 C -0.11 -2.15 8.97 22.26 0.20 -1.95 16 23 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 24 C -0.11 -1.85 10.05 22.27 0.22 -1.63 16 25 C -0.13 -3.04 9.83 22.29 0.22 -2.82 16 26 C -0.03 -0.92 5.47 22.32 0.12 -0.79 16 27 Cl -0.08 -2.79 22.82 -2.72 -0.06 -2.85 16 28 H 0.07 1.44 7.57 -2.38 -0.02 1.42 16 29 H 0.10 1.48 7.51 -2.39 -0.02 1.46 16 30 H 0.07 1.35 7.51 -2.39 -0.02 1.34 16 31 H 0.06 2.02 4.91 -2.39 -0.01 2.01 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.06 1.92 7.56 -2.38 -0.02 1.90 16 34 H 0.41 14.36 6.97 -92.71 -0.65 13.72 16 35 H 0.04 1.87 7.39 -2.39 -0.02 1.85 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.38 9.80 9.12 -74.06 -0.68 9.12 16 40 H 0.37 20.32 7.80 -92.71 -0.72 19.60 16 41 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.16 2.25 5.89 -2.91 -0.02 2.24 16 43 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -72.18 376.31 0.27 -71.92 By element: Atomic # 1 Polarization: 52.28 SS G_CDS: -1.00 Total: 51.27 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 4.80 Total: -0.11 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -3.57 Total: -120.82 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -1.92 Total: -46.01 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.06 Total: -2.85 kcal Total: -72.18 0.27 -71.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486056902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.172 kcal (2) G-P(sol) polarization free energy of solvation -72.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds