Wall clock time and date at job start Sat Apr 11 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35134 * 125.61918 * 2 1 4 4 C 1.40364 * 107.11302 * 180.02562 * 3 2 1 5 5 C 1.36544 * 106.71075 * 359.97438 * 4 3 2 6 6 C 1.46656 * 125.98722 * 179.97438 * 5 4 3 7 7 O 1.21695 * 120.00236 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99952 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46684 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.47565 * 65.00686 * 10 9 8 12 12 C 1.53003 * 109.47015 * 184.99978 * 10 9 8 13 13 N 1.46496 * 109.47535 * 305.00097 * 10 9 8 14 14 C 1.46503 * 120.00204 * 300.00336 * 13 10 9 15 15 C 1.34779 * 119.99859 * 120.00192 * 13 10 9 16 16 O 1.21275 * 120.00278 * 359.97438 * 15 13 10 17 17 C 1.50703 * 119.99735 * 179.97438 * 15 13 10 18 18 S 1.80998 * 109.47161 * 179.97438 * 17 15 13 19 19 C 1.76193 * 100.00220 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00356 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00196 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99678 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00139 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47114 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47545 * 119.99967 * 23 21 19 26 26 H 1.48504 * 109.47055 * 239.99761 * 23 21 19 27 27 O 1.33940 * 125.61363 * 180.32096 * 2 1 3 28 28 H 1.08997 * 109.47143 * 90.00043 * 1 2 3 29 29 H 1.09001 * 109.47549 * 210.00454 * 1 2 3 30 30 H 1.09002 * 109.47135 * 330.00172 * 1 2 3 31 31 H 1.07995 * 126.43861 * 0.03174 * 3 2 1 32 32 H 1.08000 * 126.64364 * 179.97438 * 4 3 2 33 33 H 0.96995 * 120.00018 * 0.27849 * 8 6 5 34 34 H 1.09000 * 109.47212 * 300.00355 * 9 8 6 35 35 H 1.09001 * 109.46577 * 60.00430 * 9 8 6 36 36 H 1.09000 * 109.46883 * 59.99966 * 12 10 9 37 37 H 1.09001 * 109.47405 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.47145 * 300.00897 * 12 10 9 39 39 H 1.08998 * 109.47349 * 89.99503 * 14 13 10 40 40 H 1.08997 * 109.47501 * 210.00248 * 14 13 10 41 41 H 1.09007 * 109.47004 * 329.99897 * 14 13 10 42 42 H 1.09003 * 109.47357 * 300.00059 * 17 15 13 43 43 H 1.08998 * 109.47009 * 60.00237 * 17 15 13 44 44 H 0.96998 * 119.99959 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6530 -0.0006 5 6 3.5822 -0.7118 -0.0004 6 6 4.7413 -1.6103 -0.0013 7 8 5.8679 -1.1502 -0.0020 8 7 4.5588 -2.9456 -0.0015 9 6 5.7167 -3.8432 -0.0030 10 6 5.2359 -5.2957 -0.0035 11 1 4.7087 -5.5037 -0.9346 12 6 6.4400 -6.2315 0.1206 13 7 4.3313 -5.5111 1.1285 14 6 4.8068 -5.2962 2.4974 15 6 3.0616 -5.9070 0.9105 16 8 2.6677 -6.0845 -0.2227 17 6 2.1312 -6.1292 2.0751 18 16 0.5103 -6.6510 1.4614 19 6 -0.3503 -6.8344 2.9878 20 1 0.1556 -6.6336 3.9206 21 6 -1.6787 -7.2370 2.9916 22 7 -2.2952 -7.4822 1.8548 23 14 -2.5913 -7.4307 4.6099 24 1 -1.6807 -7.0976 5.7347 25 1 -3.7607 -6.5157 4.6315 26 1 -3.0579 -8.8336 4.7501 27 8 2.2869 -1.0889 -0.0061 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9613 2.1259 0.0005 32 1 4.5113 1.2701 -0.0011 33 1 3.6609 -3.3124 -0.0050 34 1 6.3177 -3.6594 -0.8936 35 1 6.3196 -3.6599 0.8864 36 1 6.9673 -6.0236 1.0517 37 1 6.0975 -7.2663 0.1207 38 1 7.1131 -6.0712 -0.7216 39 1 4.6273 -4.2606 2.7861 40 1 4.2723 -5.9606 3.1763 41 1 5.8750 -5.5076 2.5484 42 1 2.5404 -6.9029 2.7247 43 1 2.0249 -5.2015 2.6373 44 1 -3.2236 -7.7631 1.8574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486793992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:41 Heat of formation + Delta-G solvation = -58.151738 kcal Electronic energy + Delta-G solvation = -27295.105526 eV Core-core repulsion = 23340.708301 eV Total energy + Delta-G solvation = -3954.397225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -42.81970 -40.17601 -39.21080 -36.57879 -34.43564 -33.37869 -32.46899 -32.32104 -31.91308 -28.80869 -28.02851 -26.93470 -25.96822 -25.52276 -22.49306 -21.72850 -21.68454 -20.30177 -19.29705 -18.33766 -17.78121 -17.01892 -16.59721 -16.41805 -15.87036 -15.57185 -15.31836 -14.97690 -14.84042 -14.38400 -14.16542 -13.47980 -13.41643 -13.36517 -13.24408 -13.19009 -13.10513 -13.06280 -12.95471 -12.59735 -12.38967 -12.30499 -12.07293 -12.03651 -11.85848 -11.13777 -11.10608 -11.05097 -10.78677 -10.47452 -10.17467 -9.83823 -9.49565 -9.32437 -9.11242 -8.67534 -8.60641 -8.27259 -6.54586 -6.25880 -3.96480 0.91500 2.17363 2.47516 2.79646 2.92793 3.04808 3.05927 3.18212 3.23118 3.27916 3.54625 4.16200 4.41433 4.44152 4.70431 4.75366 4.82607 4.99264 5.02003 5.05047 5.09617 5.18788 5.29721 5.30285 5.38344 5.40217 5.46177 5.48737 5.49261 5.53127 5.68313 5.69352 5.82705 5.85938 5.86765 5.95623 6.08286 6.14555 6.23005 6.55209 6.73527 7.29478 7.41027 7.56156 7.90073 8.31416 8.43595 9.19880 10.81536 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008853 B = 0.003638 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.955395 B = 7694.610156 C =10112.234627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.032 3.968 3 C -0.232 4.232 4 C -0.115 4.115 5 C -0.088 4.088 6 C 0.606 3.394 7 O -0.528 6.528 8 N -0.713 5.713 9 C 0.111 3.889 10 C 0.122 3.878 11 H 0.110 0.890 12 C -0.157 4.157 13 N -0.620 5.620 14 C 0.078 3.922 15 C 0.532 3.468 16 O -0.515 6.515 17 C -0.151 4.151 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.917 3.083 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 O -0.157 6.157 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.411 0.589 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.882 12.537 -1.803 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.021 4.021 3 C -0.251 4.251 4 C -0.136 4.136 5 C -0.140 4.140 6 C 0.392 3.608 7 O -0.407 6.407 8 N -0.364 5.364 9 C -0.013 4.013 10 C 0.018 3.982 11 H 0.128 0.872 12 C -0.216 4.216 13 N -0.357 5.357 14 C -0.066 4.066 15 C 0.321 3.679 16 O -0.389 6.389 17 C -0.301 4.301 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 O -0.052 6.052 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.173 0.827 32 H 0.176 0.824 33 H 0.247 0.753 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.855 12.190 -3.566 18.796 hybrid contribution -0.468 0.112 2.485 2.531 sum 13.388 12.302 -1.081 18.214 Atomic orbital electron populations 1.20497 0.84323 1.05008 1.04273 1.22951 0.94504 0.83904 1.00691 1.21575 0.92262 0.99795 1.11426 1.21903 0.98581 0.92801 1.00303 1.21949 0.82137 0.94542 1.15353 1.16520 0.86090 0.81436 0.76707 1.90858 1.22101 1.76300 1.51481 1.45854 1.11249 1.05287 1.74022 1.21832 0.88056 0.88323 1.03105 1.21299 0.91843 0.92836 0.92201 0.87165 1.22053 0.96953 0.99962 1.02589 1.47960 1.11383 1.69584 1.06766 1.21768 1.00516 1.01610 0.82675 1.20433 0.81216 0.75445 0.90848 1.90704 1.74878 1.49475 1.23826 1.23564 1.02408 1.04794 0.99333 1.85382 0.98686 1.87513 1.11752 1.22892 0.99166 1.53315 0.92913 0.90929 1.24978 0.96468 0.94611 0.97425 1.70023 1.11772 1.43143 1.25307 0.86137 0.79378 0.78028 0.82081 1.19615 1.20545 1.20548 1.84089 1.15791 1.34972 1.70373 0.89335 0.89360 0.88902 0.82654 0.82358 0.75292 0.90063 0.90758 0.91940 0.91296 0.91076 0.92805 0.90475 0.91071 0.89182 0.89287 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.41 36.00 0.37 -0.35 16 2 C 0.03 0.38 7.31 -35.42 -0.26 0.12 16 3 C -0.23 -2.44 10.77 -39.89 -0.43 -2.87 16 4 C -0.12 -1.39 10.62 -39.39 -0.42 -1.81 16 5 C -0.09 -1.22 7.13 -36.80 -0.26 -1.48 16 6 C 0.61 8.62 7.79 -12.86 -0.10 8.52 16 7 O -0.53 -8.43 16.86 5.19 0.09 -8.34 16 8 N -0.71 -9.22 5.38 -61.62 -0.33 -9.55 16 9 C 0.11 1.19 4.97 -4.04 -0.02 1.17 16 10 C 0.12 1.35 2.80 -67.93 -0.19 1.16 16 11 H 0.11 1.44 6.90 -51.93 -0.36 1.09 16 12 C -0.16 -1.32 9.17 37.16 0.34 -0.98 16 13 N -0.62 -7.99 2.25 -173.93 -0.39 -8.38 16 14 C 0.08 0.78 9.40 59.85 0.56 1.35 16 15 C 0.53 9.41 7.40 -10.98 -0.08 9.33 16 16 O -0.51 -10.91 15.19 5.56 0.08 -10.83 16 17 C -0.15 -2.93 4.71 36.01 0.17 -2.76 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.53 -14.86 9.50 30.94 0.29 -14.56 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.59 13.22 55.49 0.73 -24.85 16 23 Si 0.92 20.98 29.55 -169.99 -5.02 15.95 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 O -0.16 -2.22 10.40 4.98 0.05 -2.17 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.41 5.82 7.63 -40.82 -0.31 5.51 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 36 H 0.06 0.45 6.66 -51.93 -0.35 0.10 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 41 H 0.07 0.55 6.43 -51.93 -0.33 0.22 16 42 H 0.09 1.63 7.40 -51.92 -0.38 1.25 16 43 H 0.09 1.63 8.11 -51.92 -0.42 1.21 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -34.92 388.86 -7.50 -42.42 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.25 Total: 4.86 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.11 Total: -1.19 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.01 Total: -42.78 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.22 Total: -21.34 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.92 -7.50 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486793992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.732 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds