Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35134 * 125.61918 * 2 1 4 4 C 1.40364 * 107.11302 * 180.02562 * 3 2 1 5 5 C 1.36544 * 106.71075 * 359.97438 * 4 3 2 6 6 C 1.46656 * 125.98722 * 179.97438 * 5 4 3 7 7 O 1.21695 * 120.00236 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99952 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46684 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.47565 * 65.00686 * 10 9 8 12 12 C 1.53003 * 109.47015 * 184.99978 * 10 9 8 13 13 N 1.46496 * 109.47535 * 305.00097 * 10 9 8 14 14 C 1.46503 * 120.00204 * 300.00336 * 13 10 9 15 15 C 1.34779 * 119.99859 * 120.00192 * 13 10 9 16 16 O 1.21275 * 120.00278 * 359.97438 * 15 13 10 17 17 C 1.50703 * 119.99735 * 179.97438 * 15 13 10 18 18 S 1.80998 * 109.47161 * 179.97438 * 17 15 13 19 19 C 1.76193 * 100.00220 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00356 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00196 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99678 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00139 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47114 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47545 * 119.99967 * 23 21 19 26 26 H 1.48504 * 109.47055 * 239.99761 * 23 21 19 27 27 O 1.33940 * 125.61363 * 180.32096 * 2 1 3 28 28 H 1.08997 * 109.47143 * 90.00043 * 1 2 3 29 29 H 1.09001 * 109.47549 * 210.00454 * 1 2 3 30 30 H 1.09002 * 109.47135 * 330.00172 * 1 2 3 31 31 H 1.07995 * 126.43861 * 0.03174 * 3 2 1 32 32 H 1.08000 * 126.64364 * 179.97438 * 4 3 2 33 33 H 0.96995 * 120.00018 * 0.27849 * 8 6 5 34 34 H 1.09000 * 109.47212 * 300.00355 * 9 8 6 35 35 H 1.09001 * 109.46577 * 60.00430 * 9 8 6 36 36 H 1.09000 * 109.46883 * 59.99966 * 12 10 9 37 37 H 1.09001 * 109.47405 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.47145 * 300.00897 * 12 10 9 39 39 H 1.08998 * 109.47349 * 89.99503 * 14 13 10 40 40 H 1.08997 * 109.47501 * 210.00248 * 14 13 10 41 41 H 1.09007 * 109.47004 * 329.99897 * 14 13 10 42 42 H 1.09003 * 109.47357 * 300.00059 * 17 15 13 43 43 H 1.08998 * 109.47009 * 60.00237 * 17 15 13 44 44 H 0.96998 * 119.99959 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6530 -0.0006 5 6 3.5822 -0.7118 -0.0004 6 6 4.7413 -1.6103 -0.0013 7 8 5.8679 -1.1502 -0.0020 8 7 4.5588 -2.9456 -0.0015 9 6 5.7167 -3.8432 -0.0030 10 6 5.2359 -5.2957 -0.0035 11 1 4.7087 -5.5037 -0.9346 12 6 6.4400 -6.2315 0.1206 13 7 4.3313 -5.5111 1.1285 14 6 4.8068 -5.2962 2.4974 15 6 3.0616 -5.9070 0.9105 16 8 2.6677 -6.0845 -0.2227 17 6 2.1312 -6.1292 2.0751 18 16 0.5103 -6.6510 1.4614 19 6 -0.3503 -6.8344 2.9878 20 1 0.1556 -6.6336 3.9206 21 6 -1.6787 -7.2370 2.9916 22 7 -2.2952 -7.4822 1.8548 23 14 -2.5913 -7.4307 4.6099 24 1 -1.6807 -7.0976 5.7347 25 1 -3.7607 -6.5157 4.6315 26 1 -3.0579 -8.8336 4.7501 27 8 2.2869 -1.0889 -0.0061 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9613 2.1259 0.0005 32 1 4.5113 1.2701 -0.0011 33 1 3.6609 -3.3124 -0.0050 34 1 6.3177 -3.6594 -0.8936 35 1 6.3196 -3.6599 0.8864 36 1 6.9673 -6.0236 1.0517 37 1 6.0975 -7.2663 0.1207 38 1 7.1131 -6.0712 -0.7216 39 1 4.6273 -4.2606 2.7861 40 1 4.2723 -5.9606 3.1763 41 1 5.8750 -5.5076 2.5484 42 1 2.5404 -6.9029 2.7247 43 1 2.0249 -5.2015 2.6373 44 1 -3.2236 -7.7631 1.8574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486793992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = -81.606965 kcal Electronic energy + Delta-G solvation = -27296.122621 eV Core-core repulsion = 23340.708301 eV Total energy + Delta-G solvation = -3955.414320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.76080 -41.34165 -40.38935 -37.76803 -35.52640 -34.58325 -34.30200 -33.32466 -32.81575 -30.24712 -28.88057 -27.89257 -27.65754 -26.80747 -23.44946 -22.77710 -22.65918 -21.28066 -20.51056 -19.64042 -19.32159 -18.35607 -17.59951 -17.48658 -16.96582 -16.88465 -16.79067 -16.36733 -16.22428 -15.77219 -15.38196 -14.66466 -14.59318 -14.53773 -14.24312 -14.08743 -14.03308 -13.95683 -13.91832 -13.73816 -13.54822 -13.20544 -13.12833 -13.09952 -12.92026 -12.87751 -12.81441 -12.57864 -11.97562 -11.69516 -11.56751 -11.15661 -11.08932 -10.91753 -10.37755 -10.26334 -9.78861 -9.51970 -8.66113 -8.34710 -6.12199 -0.07343 1.24761 1.29561 1.40785 1.44894 1.52556 1.55302 1.57628 1.97878 2.01292 2.15224 2.27055 2.99713 3.25381 3.48887 3.55314 3.76105 3.86309 3.91024 4.04032 4.16077 4.18817 4.26384 4.45844 4.47811 4.51548 4.56485 4.60768 4.63802 4.66456 4.69513 4.77610 4.86732 4.88281 5.01192 5.09444 5.11537 5.29675 5.42231 5.42856 5.53736 5.80686 6.18529 6.20506 6.23657 6.82987 7.07073 7.09328 8.74593 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008853 B = 0.003638 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.955395 B = 7694.610156 C =10112.234627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.020 3.980 3 C -0.225 4.225 4 C -0.112 4.112 5 C -0.121 4.121 6 C 0.605 3.395 7 O -0.551 6.551 8 N -0.713 5.713 9 C 0.114 3.886 10 C 0.124 3.876 11 H 0.086 0.914 12 C -0.150 4.150 13 N -0.604 5.604 14 C 0.069 3.931 15 C 0.533 3.467 16 O -0.559 6.559 17 C -0.125 4.125 18 S -0.145 6.145 19 C -0.545 4.545 20 H 0.080 0.920 21 C 0.017 3.983 22 N -0.910 5.910 23 Si 0.995 3.005 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.274 1.274 27 O -0.182 6.182 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.189 0.811 32 H 0.172 0.828 33 H 0.404 0.596 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.144 13.752 0.088 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.033 4.033 3 C -0.243 4.243 4 C -0.132 4.132 5 C -0.172 4.172 6 C 0.393 3.607 7 O -0.432 6.432 8 N -0.362 5.362 9 C -0.010 4.010 10 C 0.021 3.979 11 H 0.104 0.896 12 C -0.208 4.208 13 N -0.339 5.339 14 C -0.073 4.073 15 C 0.321 3.679 16 O -0.437 6.437 17 C -0.276 4.276 18 S 0.083 5.917 19 C -0.693 4.693 20 H 0.098 0.902 21 C -0.188 4.188 22 N -0.546 5.546 23 Si 0.817 3.183 24 H -0.182 1.182 25 H -0.198 1.198 26 H -0.200 1.200 27 O -0.079 6.079 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.206 0.794 32 H 0.189 0.811 33 H 0.238 0.762 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.175 13.410 -1.655 20.319 hybrid contribution -0.769 -0.188 1.863 2.024 sum 14.406 13.222 0.208 19.555 Atomic orbital electron populations 1.20666 0.82480 1.05637 1.05234 1.23667 0.95708 0.83759 1.00133 1.21952 0.91230 1.01008 1.10141 1.22237 0.99858 0.92300 0.98849 1.22055 0.82129 0.95324 1.17721 1.16608 0.86031 0.81728 0.76346 1.90828 1.22807 1.76657 1.52946 1.45945 1.11458 1.05317 1.73494 1.21962 0.87470 0.87264 1.04304 1.21424 0.92168 0.93960 0.90390 0.89623 1.22023 0.95808 0.98298 1.04642 1.47910 1.09810 1.67417 1.08767 1.22050 1.02568 1.01998 0.80671 1.20123 0.82524 0.75815 0.89462 1.90691 1.76051 1.51948 1.25054 1.23380 0.98583 1.05551 1.00112 1.85530 1.04066 1.88319 1.13827 1.23208 0.99776 1.53286 0.93053 0.90171 1.26062 0.97402 0.93929 1.01423 1.70179 1.12254 1.44201 1.27998 0.84958 0.77952 0.78129 0.77245 1.18167 1.19837 1.19981 1.84070 1.16226 1.36445 1.71116 0.88146 0.90934 0.85979 0.79386 0.81088 0.76150 0.89023 0.89268 0.89817 0.92385 0.89085 0.92335 0.90317 0.87723 0.87483 0.88001 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.41 71.23 0.74 -0.62 16 2 C 0.02 0.44 7.31 24.97 0.18 0.63 16 3 C -0.22 -4.35 10.77 22.07 0.24 -4.11 16 4 C -0.11 -2.60 10.62 22.39 0.24 -2.36 16 5 C -0.12 -3.38 7.13 24.07 0.17 -3.21 16 6 C 0.61 17.27 7.79 86.44 0.67 17.94 16 7 O -0.55 -17.37 16.86 -4.33 -0.07 -17.44 16 8 N -0.71 -18.43 5.38 -467.09 -2.51 -20.95 16 9 C 0.11 2.26 4.97 86.38 0.43 2.69 16 10 C 0.12 2.61 2.80 44.99 0.13 2.74 16 11 H 0.09 2.29 6.90 -2.39 -0.02 2.27 16 12 C -0.15 -2.14 9.17 71.98 0.66 -1.48 16 13 N -0.60 -14.94 2.25 -822.59 -1.85 -16.79 16 14 C 0.07 1.22 9.40 127.77 1.20 2.42 16 15 C 0.53 19.06 7.40 87.66 0.65 19.71 16 16 O -0.56 -24.75 15.19 -3.01 -0.05 -24.80 16 17 C -0.13 -4.89 4.71 71.24 0.34 -4.55 16 18 S -0.14 -7.87 20.57 -56.49 -1.16 -9.03 16 19 C -0.55 -30.64 9.50 67.95 0.65 -29.99 16 20 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 21 C 0.02 0.94 5.49 84.86 0.47 1.41 16 22 N -0.91 -54.93 13.22 21.65 0.29 -54.64 16 23 Si 1.00 42.86 29.55 68.60 2.03 44.89 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 O -0.18 -5.28 10.40 -5.11 -0.05 -5.33 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.40 11.81 7.63 -92.71 -0.71 11.11 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 1.56 7.84 -2.39 -0.02 1.54 16 36 H 0.08 0.87 6.66 -2.39 -0.02 0.85 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.40 6.44 -2.39 -0.02 1.39 16 41 H 0.10 1.19 6.43 -2.38 -0.02 1.18 16 42 H 0.11 3.79 7.40 -2.39 -0.02 3.78 16 43 H 0.10 3.69 8.11 -2.40 -0.02 3.67 16 44 H 0.27 15.15 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -79.20 388.86 3.69 -75.51 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.32 Total: 27.37 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 6.76 Total: 1.21 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -4.08 Total: -92.38 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.17 Total: -47.57 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -79.20 3.69 -75.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486793992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.097 kcal (2) G-P(sol) polarization free energy of solvation -79.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds