Wall clock time and date at job start Sat Apr 11 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41382 * 126.58161 * 2 1 4 4 C 1.34505 * 106.84567 * 179.97438 * 3 2 1 5 5 O 1.34307 * 108.42111 * 359.73124 * 4 3 2 6 6 C 1.34304 * 109.47132 * 0.43938 * 5 4 3 7 7 C 1.50700 * 125.78579 * 179.82898 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.68837 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.46716 * 64.99947 * 12 11 10 14 14 C 1.53002 * 109.47339 * 185.00128 * 12 11 10 15 15 N 1.46496 * 109.47141 * 305.00435 * 12 11 10 16 16 C 1.34776 * 119.99926 * 154.99391 * 15 12 11 17 17 O 1.21277 * 120.00174 * 0.02562 * 16 15 12 18 18 C 1.50700 * 120.00068 * 179.97438 * 16 15 12 19 19 S 1.80997 * 109.47500 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00235 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00084 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99740 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00512 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99663 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47093 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.46869 * 120.00267 * 24 22 20 27 27 H 1.48493 * 109.47212 * 240.00306 * 24 22 20 28 28 H 1.08998 * 109.47554 * 270.04736 * 1 2 3 29 29 H 1.08995 * 109.46894 * 30.05613 * 1 2 3 30 30 H 1.09001 * 109.46766 * 150.04953 * 1 2 3 31 31 H 1.08007 * 126.57476 * 359.96955 * 3 2 1 32 32 H 1.07999 * 125.79214 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.47210 * 149.69130 * 7 6 5 34 34 H 1.08994 * 109.47551 * 29.68783 * 7 6 5 35 35 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 36 36 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 37 37 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 38 38 H 1.09000 * 109.46503 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.47257 * 300.00018 * 14 12 11 40 40 H 1.08997 * 109.46706 * 60.00439 * 14 12 11 41 41 H 0.96998 * 120.00378 * 334.99902 * 15 12 11 42 42 H 1.08999 * 109.47242 * 300.00880 * 18 16 15 43 43 H 1.09005 * 109.47225 * 60.00479 * 18 16 15 44 44 H 0.96996 * 120.00137 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6811 0.0006 5 8 3.5848 -0.6616 0.0069 6 6 2.3087 -1.0801 0.0007 7 6 1.8523 -2.5164 0.0011 8 6 1.7006 -2.9956 -1.4196 9 8 1.9401 -2.2450 -2.3417 10 7 1.3048 -4.2602 -1.6656 11 6 1.1632 -4.7280 -3.0467 12 6 0.7046 -6.1876 -3.0464 13 1 -0.2944 -6.2544 -2.6154 14 6 0.6767 -6.7137 -4.4828 15 7 1.6348 -6.9916 -2.2499 16 6 1.2175 -8.1412 -1.6835 17 8 0.0721 -8.5103 -1.8337 18 6 2.1746 -8.9685 -0.8646 19 16 1.3222 -10.4400 -0.2447 20 6 2.6357 -11.2000 0.6508 21 1 3.6085 -10.7322 0.6835 22 6 2.4200 -12.3999 1.3142 23 7 1.2345 -12.9704 1.2741 24 14 3.8127 -13.2060 2.2630 25 1 5.0354 -12.3705 2.1527 26 1 3.4288 -13.3347 3.6918 27 1 4.0809 -14.5533 1.6992 28 1 -0.3634 0.0008 1.0276 29 1 -0.3633 0.8894 -0.5147 30 1 -0.3633 -0.8905 -0.5131 31 1 2.0366 2.1690 -0.0005 32 1 4.5060 1.2924 0.0011 33 1 0.8938 -2.5930 0.5146 34 1 2.5902 -3.1320 0.5154 35 1 1.1136 -4.8607 -0.9282 36 1 0.4246 -4.1155 -3.5638 37 1 2.1229 -4.6483 -3.5574 38 1 0.3495 -7.7535 -4.4825 39 1 -0.0155 -6.1156 -5.0755 40 1 1.6756 -6.6469 -4.9137 41 1 2.5510 -6.6965 -2.1300 42 1 3.0167 -9.2718 -1.4865 43 1 2.5381 -8.3776 -0.0238 44 1 1.0839 -13.8092 1.7374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502028662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:51 Heat of formation + Delta-G solvation = -97.402498 kcal Electronic energy + Delta-G solvation = -26088.836091 eV Core-core repulsion = 22132.736825 eV Total energy + Delta-G solvation = -3956.099266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -43.52629 -41.09935 -40.38451 -37.47215 -35.21475 -34.84498 -34.56723 -33.21295 -32.49615 -30.09829 -29.80148 -27.81256 -27.64072 -26.33896 -22.92610 -22.45186 -21.82045 -21.59839 -20.53210 -19.85424 -18.49909 -18.02847 -17.91824 -17.44325 -16.89276 -16.86456 -16.65031 -16.43855 -16.33345 -15.88566 -15.33709 -14.81543 -14.74183 -14.57635 -14.46147 -14.02999 -13.99239 -13.91805 -13.71923 -13.62815 -13.35653 -13.24221 -13.13857 -12.96381 -12.94939 -12.90594 -12.56473 -12.34820 -12.05166 -11.68886 -11.14733 -11.11798 -10.92645 -10.50828 -10.24204 -10.21104 -10.15903 -9.27677 -8.63537 -8.33704 -6.10454 0.75076 1.28747 1.41844 1.48364 1.54691 1.59022 1.62608 1.64592 1.99812 2.22588 2.29103 2.38113 3.00783 3.33776 3.56698 3.61187 3.89501 3.98713 4.00328 4.05718 4.06806 4.25371 4.27392 4.35967 4.44308 4.55233 4.58196 4.63442 4.71208 4.75253 4.80079 4.88767 4.96763 5.00596 5.14527 5.22096 5.32809 5.36664 5.44008 5.48586 5.67769 6.21445 6.22159 6.42002 6.49557 7.08474 7.14069 7.25743 8.75422 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013074 B = 0.002105 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.175182 B =13297.873491 C =14705.971462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.182 4.182 3 C -0.228 4.228 4 C -0.041 4.041 5 O -0.193 6.193 6 C -0.022 4.022 7 C -0.060 4.060 8 C 0.518 3.482 9 O -0.573 6.573 10 N -0.719 5.719 11 C 0.123 3.877 12 C 0.138 3.862 13 H 0.084 0.916 14 C -0.159 4.159 15 N -0.711 5.711 16 C 0.540 3.460 17 O -0.559 6.559 18 C -0.132 4.132 19 S -0.148 6.148 20 C -0.544 4.544 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.276 1.276 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.164 0.836 32 H 0.234 0.766 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.414 0.586 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.414 0.586 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 27.285 -4.147 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.183 4.183 3 C -0.247 4.247 4 C -0.108 4.108 5 O -0.089 6.089 6 C -0.072 4.072 7 C -0.100 4.100 8 C 0.305 3.695 9 O -0.452 6.452 10 N -0.372 5.372 11 C -0.002 4.002 12 C 0.033 3.967 13 H 0.102 0.898 14 C -0.218 4.218 15 N -0.366 5.366 16 C 0.326 3.674 17 O -0.437 6.437 18 C -0.283 4.283 19 S 0.079 5.921 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.202 1.202 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.182 0.818 32 H 0.250 0.750 33 H 0.166 0.834 34 H 0.151 0.849 35 H 0.251 0.749 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.251 0.749 42 H 0.124 0.876 43 H 0.131 0.869 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.761 26.884 -5.031 27.408 hybrid contribution 2.044 -0.338 0.945 2.277 sum 3.805 26.546 -4.086 27.127 Atomic orbital electron populations 1.20221 0.88073 1.02802 1.02808 1.20605 0.98223 0.92444 1.07056 1.22037 0.92846 1.00569 1.09255 1.24682 1.01076 0.80031 1.05010 1.83971 1.29204 1.24008 1.71763 1.21669 0.81200 0.96113 1.08198 1.20203 1.06242 0.89005 0.94504 1.20723 0.75842 0.81504 0.91440 1.90735 1.51137 1.55857 1.47473 1.45902 1.68961 1.12750 1.09558 1.21625 1.02959 0.92212 0.83359 1.21183 0.94211 0.88538 0.92733 0.89832 1.22087 1.03621 1.01326 0.94757 1.45871 1.15740 1.22327 1.52628 1.19964 0.87573 0.81198 0.78655 1.90710 1.20959 1.70632 1.61358 1.23394 1.01930 1.00136 1.02857 1.85559 1.19561 1.21578 1.65421 1.23233 0.98525 1.10638 1.36803 0.89973 1.26088 0.99215 0.96768 0.97082 1.70178 1.23715 1.18486 1.42347 0.84943 0.77775 0.77926 0.77547 1.18075 1.19965 1.20150 0.89961 0.91073 0.92033 0.81793 0.74979 0.83419 0.84905 0.74939 0.89399 0.90245 0.93847 0.89496 0.90889 0.74861 0.87611 0.86869 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 9.99 71.24 0.71 -0.47 16 2 C -0.18 -3.48 6.16 -19.94 -0.12 -3.61 16 3 C -0.23 -3.92 10.87 22.19 0.24 -3.68 16 4 C -0.04 -0.68 12.09 66.96 0.81 0.13 16 5 O -0.19 -4.18 10.65 -2.54 -0.03 -4.21 16 6 C -0.02 -0.44 5.81 24.83 0.14 -0.29 16 7 C -0.06 -0.84 5.85 29.10 0.17 -0.67 16 8 C 0.52 9.55 7.82 87.66 0.69 10.23 16 9 O -0.57 -15.66 16.03 -3.04 -0.05 -15.71 16 10 N -0.72 -10.24 5.39 -463.06 -2.49 -12.74 16 11 C 0.12 1.79 5.23 86.38 0.45 2.25 16 12 C 0.14 2.46 2.73 44.99 0.12 2.58 16 13 H 0.08 1.79 7.58 -2.39 -0.02 1.77 16 14 C -0.16 -2.80 9.48 71.98 0.68 -2.11 16 15 N -0.71 -14.44 4.52 -442.54 -2.00 -16.44 16 16 C 0.54 17.34 7.81 87.66 0.68 18.03 16 17 O -0.56 -23.26 15.52 -3.02 -0.05 -23.31 16 18 C -0.13 -4.75 6.16 71.24 0.44 -4.31 16 19 S -0.15 -7.85 20.57 -56.49 -1.16 -9.01 16 20 C -0.54 -30.06 9.50 67.95 0.65 -29.42 16 21 H 0.08 4.22 7.80 -2.91 -0.02 4.19 16 22 C 0.01 0.74 5.49 84.86 0.47 1.20 16 23 N -0.91 -54.79 13.22 21.65 0.29 -54.51 16 24 Si 1.00 42.68 29.55 68.60 2.03 44.70 16 25 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 27 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.88 7.78 -2.39 -0.02 0.86 16 31 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.23 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.15 1.26 7.76 -2.38 -0.02 1.24 16 34 H 0.13 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.41 4.85 8.14 -92.71 -0.75 4.10 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.41 6.16 8.60 -92.71 -0.80 5.36 16 42 H 0.11 3.49 8.14 -2.40 -0.02 3.47 16 43 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 44 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -83.16 395.31 2.15 -81.01 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.52 Total: 20.35 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 6.13 Total: -10.14 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -4.21 Total: -83.69 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -0.12 Total: -43.23 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.16 Total: -9.01 kcal Total: -83.16 2.15 -81.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502028662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.391 kcal (2) G-P(sol) polarization free energy of solvation -83.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds