Wall clock time and date at job start Sat Apr 11 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40366 * 126.44273 * 2 1 4 4 C 1.36550 * 106.71051 * 180.02562 * 3 2 1 5 5 C 1.46658 * 125.98835 * 179.97438 * 4 3 2 6 6 O 1.21692 * 119.99614 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99882 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99910 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47297 * 34.99871 * 8 7 5 10 10 C 1.53006 * 109.46998 * 275.00232 * 8 7 5 11 11 C 1.52997 * 109.47007 * 155.00372 * 8 7 5 12 12 N 1.46503 * 109.47014 * 304.99673 * 11 8 7 13 13 C 1.34778 * 119.99700 * 179.97438 * 12 11 8 14 14 O 1.21276 * 119.99972 * 0.02562 * 13 12 11 15 15 C 1.50695 * 119.99824 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.47392 * 180.02562 * 15 13 12 17 17 C 1.76197 * 99.99982 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00217 * 0.02562 * 17 16 15 19 19 C 1.38794 * 119.99755 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00381 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00251 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46873 * 90.00010 * 21 19 17 23 23 H 1.48498 * 109.47533 * 210.00032 * 21 19 17 24 24 H 1.48499 * 109.47001 * 330.00552 * 21 19 17 25 25 O 1.34914 * 108.02005 * 0.24546 * 4 3 2 26 26 C 1.33929 * 109.38668 * 359.59641 * 25 4 3 27 27 C 1.50702 * 125.61578 * 180.19519 * 26 25 4 28 28 H 1.08995 * 109.47401 * 89.96987 * 1 2 3 29 29 H 1.09005 * 109.46775 * 209.97110 * 1 2 3 30 30 H 1.08997 * 109.47141 * 329.96834 * 1 2 3 31 31 H 1.08001 * 126.64565 * 0.03118 * 3 2 1 32 32 H 0.96995 * 119.99797 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47002 * 179.97438 * 10 8 7 34 34 H 1.08993 * 109.46955 * 300.00226 * 10 8 7 35 35 H 1.09000 * 109.47050 * 60.00054 * 10 8 7 36 36 H 1.08998 * 109.47192 * 65.00173 * 11 8 7 37 37 H 1.08998 * 109.46934 * 185.00019 * 11 8 7 38 38 H 0.96997 * 120.00215 * 0.02562 * 12 11 8 39 39 H 1.08998 * 109.47446 * 300.00685 * 15 13 12 40 40 H 1.09008 * 109.46819 * 60.00695 * 15 13 12 41 41 H 0.96993 * 120.00384 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.47057 * 270.24837 * 27 26 25 43 43 H 1.08998 * 109.46920 * 30.24613 * 27 26 25 44 44 H 1.09002 * 109.47326 * 150.24137 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3407 1.1292 0.0000 4 6 3.6261 0.6681 -0.0006 5 6 4.8379 1.4942 -0.0013 6 8 4.7470 2.7077 -0.0019 7 7 6.0521 0.9093 -0.0013 8 6 7.2626 1.7344 -0.0027 9 1 7.0890 2.6352 0.5860 10 6 7.6125 2.1242 -1.4402 11 6 8.4206 0.9419 0.6071 12 7 8.0391 0.4667 1.9393 13 6 8.9079 -0.2598 2.6700 14 8 10.0057 -0.5196 2.2249 15 6 8.5153 -0.7491 4.0402 16 16 9.8853 -1.6866 4.7617 17 6 9.1726 -2.1255 6.3121 18 1 8.1686 -1.8096 6.5537 19 6 9.9017 -2.8773 7.2230 20 7 9.3692 -3.2057 8.3811 21 14 11.6382 -3.4243 6.8049 22 1 12.6050 -2.3929 7.2595 23 1 11.9297 -4.7108 7.4869 24 1 11.7603 -3.6040 5.3359 25 8 3.5857 -0.6804 -0.0064 26 6 2.3097 -1.0870 -0.0007 27 6 1.8455 -2.5208 -0.0002 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 2.0266 2.1625 0.0005 32 1 6.1244 -0.0580 -0.0012 33 1 8.5130 2.7385 -1.4412 34 1 7.7861 1.2235 -2.0289 35 1 6.7875 2.6888 -1.8746 36 1 8.6525 0.0887 -0.0304 37 1 9.2976 1.5841 0.6878 38 1 7.1609 0.6742 2.2952 39 1 8.2834 0.1038 4.6780 40 1 7.6381 -1.3912 3.9591 41 1 9.8786 -3.7314 9.0175 42 1 1.7328 -2.8665 -1.0277 43 1 2.5807 -3.1405 0.5131 44 1 0.8873 -2.5923 0.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502106238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:56 Heat of formation + Delta-G solvation = -73.303242 kcal Electronic energy + Delta-G solvation = -26266.207651 eV Core-core repulsion = 22311.153407 eV Total energy + Delta-G solvation = -3955.054244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.10251 -40.19653 -39.18241 -36.65202 -34.89285 -33.79074 -32.51271 -32.45224 -31.47153 -29.56465 -29.08078 -26.85003 -26.05892 -25.54851 -23.25068 -21.60530 -21.31720 -20.50090 -20.10117 -18.40677 -17.81709 -16.95788 -16.80320 -16.42655 -16.26554 -15.67629 -15.23417 -15.09779 -14.97843 -14.56358 -14.13196 -13.98783 -13.71139 -13.60843 -13.44915 -13.30810 -13.20578 -13.09082 -13.02886 -12.88330 -12.80307 -12.59644 -12.35329 -11.98134 -11.94770 -11.39493 -11.27976 -11.02261 -10.64998 -10.62248 -10.07848 -9.88058 -9.67283 -9.55446 -9.09983 -9.00814 -8.75146 -8.52534 -6.93867 -6.30280 -4.02331 0.68356 1.89708 2.21893 2.67765 2.78589 2.82577 2.92046 3.27554 3.32602 3.48913 3.62346 4.15046 4.28876 4.31648 4.38644 4.44948 4.68934 4.75752 4.77770 4.87906 4.97157 4.99870 5.08685 5.18397 5.21956 5.25280 5.26724 5.29386 5.32350 5.46282 5.52539 5.55831 5.62633 5.65923 5.73594 5.83032 5.98758 6.00331 6.07584 6.41073 6.49877 7.05391 7.51028 7.68207 7.92802 8.40372 8.41502 9.15747 10.78993 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011226 B = 0.002473 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.662165 B =11320.881730 C =13156.162879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.196 4.196 3 C -0.110 4.110 4 C -0.085 4.085 5 C 0.608 3.392 6 O -0.519 6.519 7 N -0.717 5.717 8 C 0.131 3.869 9 H 0.100 0.900 10 C -0.161 4.161 11 C 0.113 3.887 12 N -0.738 5.738 13 C 0.532 3.468 14 O -0.518 6.518 15 C -0.125 4.125 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 O -0.160 6.160 26 C 0.024 3.976 27 C -0.080 4.080 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.160 0.840 32 H 0.408 0.592 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.400 0.600 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.971 6.911 -21.838 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.197 4.197 3 C -0.130 4.130 4 C -0.137 4.137 5 C 0.395 3.605 6 O -0.397 6.397 7 N -0.369 5.369 8 C 0.027 3.973 9 H 0.118 0.882 10 C -0.220 4.220 11 C -0.011 4.011 12 N -0.394 5.394 13 C 0.318 3.682 14 O -0.392 6.392 15 C -0.275 4.275 16 S 0.086 5.914 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 O -0.056 6.056 26 C -0.029 4.029 27 C -0.137 4.137 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.177 0.823 32 H 0.244 0.756 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.235 0.765 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.872 7.079 -22.406 27.809 hybrid contribution -1.085 -0.249 0.841 1.395 sum -15.957 6.830 -21.565 27.683 Atomic orbital electron populations 1.20198 0.88510 1.02938 1.02255 1.20226 0.97618 0.91721 1.10150 1.21827 0.90516 1.00489 1.00191 1.21886 0.96051 0.80421 1.15292 1.16514 0.81201 0.86335 0.76477 1.90892 1.85986 1.12189 1.50591 1.46033 1.05085 1.11069 1.74724 1.21343 0.83071 0.94816 0.98120 0.88200 1.22118 1.02683 1.02293 0.94915 1.21635 0.96566 0.98981 0.83961 1.45968 1.18962 1.56746 1.17691 1.20286 0.84355 0.77129 0.86450 1.90705 1.21236 1.55665 1.71606 1.23282 1.04992 1.04070 0.95194 1.84772 1.20129 1.66898 1.19634 1.22311 1.04823 1.39987 0.99785 0.89395 1.24718 0.98459 0.94266 0.93891 1.69937 1.37855 1.36875 1.07027 0.86730 0.84377 0.79091 0.81618 1.19190 1.19933 1.15927 1.84009 1.28951 1.21656 1.71012 1.22643 0.80496 0.97304 1.02421 1.20451 1.02267 0.86976 1.03975 0.91290 0.91361 0.91239 0.82280 0.75600 0.90760 0.91871 0.91447 0.90734 0.89620 0.76539 0.88467 0.88480 0.91921 0.89510 0.89828 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.17 36.00 0.37 -0.09 16 2 C -0.20 -1.65 6.14 -104.93 -0.64 -2.29 16 3 C -0.11 -1.08 10.57 -39.39 -0.42 -1.50 16 4 C -0.08 -0.90 7.13 -36.79 -0.26 -1.16 16 5 C 0.61 6.69 7.75 -12.86 -0.10 6.59 16 6 O -0.52 -7.04 16.53 5.20 0.09 -6.95 16 7 N -0.72 -6.39 4.51 -55.12 -0.25 -6.64 16 8 C 0.13 1.12 2.73 -67.93 -0.19 0.93 16 9 H 0.10 0.95 7.58 -51.93 -0.39 0.55 16 10 C -0.16 -1.19 9.48 37.16 0.35 -0.84 16 11 C 0.11 1.13 5.23 -4.04 -0.02 1.11 16 12 N -0.74 -9.03 5.39 -60.30 -0.32 -9.36 16 13 C 0.53 9.17 7.85 -10.99 -0.09 9.08 16 14 O -0.52 -10.82 15.86 5.56 0.09 -10.73 16 15 C -0.12 -2.39 6.16 36.00 0.22 -2.17 16 16 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 17 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 21 Si 0.86 21.71 27.74 -169.99 -4.71 17.00 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 25 O -0.16 -1.60 10.40 5.00 0.05 -1.55 16 26 C 0.02 0.20 7.31 -35.41 -0.26 -0.06 16 27 C -0.08 -0.40 10.21 36.01 0.37 -0.03 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.29 7.13 -51.93 -0.37 -0.08 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.41 3.32 8.36 -40.82 -0.34 2.98 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.40 4.23 8.14 -40.82 -0.33 3.90 16 39 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 40 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.32 7.13 -51.93 -0.37 -0.05 16 LS Contribution 392.45 15.07 5.91 5.91 Total: -1.00 -35.78 392.45 -7.28 -43.05 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.46 Total: 2.98 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.45 Total: -2.41 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.20 Total: -41.77 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.23 Total: -19.23 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.78 -7.28 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502106238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.248 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds