Wall clock time and date at job start Sat Apr 11 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40366 * 126.44273 * 2 1 4 4 C 1.36550 * 106.71051 * 180.02562 * 3 2 1 5 5 C 1.46658 * 125.98835 * 179.97438 * 4 3 2 6 6 O 1.21692 * 119.99614 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99882 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99910 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47297 * 34.99871 * 8 7 5 10 10 C 1.53006 * 109.46998 * 275.00232 * 8 7 5 11 11 C 1.52997 * 109.47007 * 155.00372 * 8 7 5 12 12 N 1.46503 * 109.47014 * 304.99673 * 11 8 7 13 13 C 1.34778 * 119.99700 * 179.97438 * 12 11 8 14 14 O 1.21276 * 119.99972 * 0.02562 * 13 12 11 15 15 C 1.50695 * 119.99824 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.47392 * 180.02562 * 15 13 12 17 17 C 1.76197 * 99.99982 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00217 * 0.02562 * 17 16 15 19 19 C 1.38794 * 119.99755 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00381 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00251 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46873 * 90.00010 * 21 19 17 23 23 H 1.48498 * 109.47533 * 210.00032 * 21 19 17 24 24 H 1.48499 * 109.47001 * 330.00552 * 21 19 17 25 25 O 1.34914 * 108.02005 * 0.24546 * 4 3 2 26 26 C 1.33929 * 109.38668 * 359.59641 * 25 4 3 27 27 C 1.50702 * 125.61578 * 180.19519 * 26 25 4 28 28 H 1.08995 * 109.47401 * 89.96987 * 1 2 3 29 29 H 1.09005 * 109.46775 * 209.97110 * 1 2 3 30 30 H 1.08997 * 109.47141 * 329.96834 * 1 2 3 31 31 H 1.08001 * 126.64565 * 0.03118 * 3 2 1 32 32 H 0.96995 * 119.99797 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47002 * 179.97438 * 10 8 7 34 34 H 1.08993 * 109.46955 * 300.00226 * 10 8 7 35 35 H 1.09000 * 109.47050 * 60.00054 * 10 8 7 36 36 H 1.08998 * 109.47192 * 65.00173 * 11 8 7 37 37 H 1.08998 * 109.46934 * 185.00019 * 11 8 7 38 38 H 0.96997 * 120.00215 * 0.02562 * 12 11 8 39 39 H 1.08998 * 109.47446 * 300.00685 * 15 13 12 40 40 H 1.09008 * 109.46819 * 60.00695 * 15 13 12 41 41 H 0.96993 * 120.00384 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.47057 * 270.24837 * 27 26 25 43 43 H 1.08998 * 109.46920 * 30.24613 * 27 26 25 44 44 H 1.09002 * 109.47326 * 150.24137 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3407 1.1292 0.0000 4 6 3.6261 0.6681 -0.0006 5 6 4.8379 1.4942 -0.0013 6 8 4.7470 2.7077 -0.0019 7 7 6.0521 0.9093 -0.0013 8 6 7.2626 1.7344 -0.0027 9 1 7.0890 2.6352 0.5860 10 6 7.6125 2.1242 -1.4402 11 6 8.4206 0.9419 0.6071 12 7 8.0391 0.4667 1.9393 13 6 8.9079 -0.2598 2.6700 14 8 10.0057 -0.5196 2.2249 15 6 8.5153 -0.7491 4.0402 16 16 9.8853 -1.6866 4.7617 17 6 9.1726 -2.1255 6.3121 18 1 8.1686 -1.8096 6.5537 19 6 9.9017 -2.8773 7.2230 20 7 9.3692 -3.2057 8.3811 21 14 11.6382 -3.4243 6.8049 22 1 12.6050 -2.3929 7.2595 23 1 11.9297 -4.7108 7.4869 24 1 11.7603 -3.6040 5.3359 25 8 3.5857 -0.6804 -0.0064 26 6 2.3097 -1.0870 -0.0007 27 6 1.8455 -2.5208 -0.0002 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 2.0266 2.1625 0.0005 32 1 6.1244 -0.0580 -0.0012 33 1 8.5130 2.7385 -1.4412 34 1 7.7861 1.2235 -2.0289 35 1 6.7875 2.6888 -1.8746 36 1 8.6525 0.0887 -0.0304 37 1 9.2976 1.5841 0.6878 38 1 7.1609 0.6742 2.2952 39 1 8.2834 0.1038 4.6780 40 1 7.6381 -1.3912 3.9591 41 1 9.8786 -3.7314 9.0175 42 1 1.7328 -2.8665 -1.0277 43 1 2.5807 -3.1405 0.5131 44 1 0.8873 -2.5923 0.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502106238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:55 Heat of formation + Delta-G solvation = -98.821490 kcal Electronic energy + Delta-G solvation = -26267.314205 eV Core-core repulsion = 22311.153407 eV Total energy + Delta-G solvation = -3956.160798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -43.79024 -41.14588 -40.41010 -37.60837 -35.53194 -34.88309 -34.67527 -33.19500 -32.29064 -30.90608 -29.58373 -27.90959 -27.45786 -26.86629 -23.96394 -22.33285 -22.09015 -21.81609 -20.83145 -19.93248 -19.03322 -17.93465 -17.71511 -17.59403 -17.31257 -17.06777 -16.59072 -16.38884 -15.95247 -15.71417 -15.38156 -15.02888 -14.83407 -14.62009 -14.36801 -14.15494 -14.07089 -13.89746 -13.78917 -13.63281 -13.62741 -13.37194 -13.31749 -13.04779 -13.00696 -12.97688 -12.65451 -12.48116 -12.12140 -11.86744 -11.52279 -11.17842 -11.08393 -10.77659 -10.55736 -10.41515 -10.22838 -9.40002 -9.00625 -8.52276 -6.23388 -0.06670 0.97143 1.24080 1.31573 1.45736 1.50185 1.52563 1.55335 1.99535 2.01927 2.20681 2.25450 2.69791 2.85950 3.45240 3.56276 3.76995 3.80859 3.85531 3.99785 4.17313 4.19915 4.28485 4.44272 4.44706 4.53380 4.64111 4.65377 4.69635 4.71735 4.71983 4.87334 4.91353 5.03152 5.06434 5.10417 5.18186 5.26700 5.33471 5.53704 5.69811 5.81458 6.10622 6.28933 6.34066 6.87841 6.92626 7.10456 8.60286 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011226 B = 0.002473 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.662165 B =11320.881730 C =13156.162879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.205 4.205 3 C -0.118 4.118 4 C -0.109 4.109 5 C 0.610 3.390 6 O -0.551 6.551 7 N -0.708 5.708 8 C 0.139 3.861 9 H 0.094 0.906 10 C -0.156 4.156 11 C 0.116 3.884 12 N -0.716 5.716 13 C 0.539 3.461 14 O -0.556 6.556 15 C -0.115 4.115 16 S -0.169 6.169 17 C -0.530 4.530 18 H 0.060 0.940 19 C 0.044 3.956 20 N -0.918 5.918 21 Si 0.916 3.084 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.235 1.235 25 O -0.169 6.169 26 C 0.020 3.980 27 C -0.081 4.081 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.161 0.839 32 H 0.414 0.586 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.411 0.589 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.277 0.723 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.443 6.554 -23.384 29.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.207 4.207 3 C -0.139 4.139 4 C -0.160 4.160 5 C 0.397 3.603 6 O -0.431 6.431 7 N -0.359 5.359 8 C 0.035 3.965 9 H 0.112 0.888 10 C -0.215 4.215 11 C -0.008 4.008 12 N -0.369 5.369 13 C 0.325 3.675 14 O -0.434 6.434 15 C -0.265 4.265 16 S 0.057 5.943 17 C -0.678 4.678 18 H 0.079 0.921 19 C -0.161 4.161 20 N -0.556 5.556 21 Si 0.737 3.263 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.159 1.159 25 O -0.066 6.066 26 C -0.033 4.033 27 C -0.136 4.136 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.179 0.821 32 H 0.250 0.750 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.247 0.753 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.379 6.726 -23.967 29.261 hybrid contribution -1.119 -0.078 1.254 1.683 sum -16.498 6.648 -22.713 28.850 Atomic orbital electron populations 1.20289 0.86478 1.03841 1.03203 1.20595 0.99072 0.91092 1.09909 1.22078 0.90840 1.01206 0.99771 1.21842 0.96141 0.80885 1.17136 1.16569 0.81740 0.85971 0.76008 1.90868 1.86478 1.13435 1.52356 1.45980 1.04704 1.11342 1.73895 1.21292 0.82249 0.94113 0.98847 0.88828 1.22080 1.02881 1.02798 0.93740 1.21780 0.97215 0.99369 0.82432 1.45752 1.18463 1.54718 1.18013 1.19852 0.84303 0.77544 0.85842 1.90698 1.22866 1.57602 1.72216 1.23283 1.02842 1.03954 0.96468 1.84647 1.23316 1.68358 1.17937 1.22462 1.03890 1.39753 1.01674 0.92149 1.25593 1.02313 0.94388 0.93801 1.70017 1.39625 1.37854 1.08090 0.85849 0.79646 0.79311 0.81451 1.18716 1.18324 1.15855 1.83994 1.30014 1.21259 1.71301 1.23389 0.79903 0.98887 1.01086 1.20653 1.02980 0.84714 1.05296 0.90248 0.89748 0.91083 0.82138 0.74969 0.89326 0.90984 0.92486 0.90133 0.89188 0.75285 0.87212 0.86960 0.91340 0.87859 0.89817 0.86967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.17 71.23 0.72 -0.02 16 2 C -0.21 -3.22 6.14 -20.06 -0.12 -3.34 16 3 C -0.12 -2.31 10.57 22.39 0.24 -2.07 16 4 C -0.11 -2.29 7.13 24.08 0.17 -2.12 16 5 C 0.61 13.27 7.75 86.44 0.67 13.94 16 6 O -0.55 -15.04 16.53 -4.32 -0.07 -15.11 16 7 N -0.71 -11.85 4.51 -446.52 -2.01 -13.87 16 8 C 0.14 2.16 2.73 44.99 0.12 2.28 16 9 H 0.09 1.65 7.58 -2.39 -0.02 1.63 16 10 C -0.16 -2.04 9.48 71.98 0.68 -1.35 16 11 C 0.12 2.08 5.23 86.38 0.45 2.53 16 12 N -0.72 -16.10 5.39 -463.07 -2.50 -18.60 16 13 C 0.54 17.74 7.85 87.66 0.69 18.42 16 14 O -0.56 -22.54 15.86 -3.02 -0.05 -22.58 16 15 C -0.11 -4.26 6.16 71.23 0.44 -3.82 16 16 S -0.17 -8.44 18.55 -56.49 -1.05 -9.49 16 17 C -0.53 -30.79 10.04 67.95 0.68 -30.11 16 18 H 0.06 3.71 8.03 -2.91 -0.02 3.69 16 19 C 0.04 2.60 5.50 84.86 0.47 3.07 16 20 N -0.92 -55.89 13.97 21.65 0.30 -55.59 16 21 Si 0.92 44.70 27.74 68.60 1.90 46.60 16 22 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.23 -11.36 6.74 99.48 0.67 -10.69 16 25 O -0.17 -3.26 10.40 -5.02 -0.05 -3.32 16 26 C 0.02 0.30 7.31 24.97 0.18 0.49 16 27 C -0.08 -0.62 10.21 71.24 0.73 0.11 16 28 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.49 7.13 -2.38 -0.02 0.47 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.41 6.15 8.36 -92.71 -0.77 5.37 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.41 7.85 8.14 -92.71 -0.75 7.09 16 39 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 40 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 41 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.11 0.44 7.13 -2.39 -0.02 0.42 16 Total: -1.00 -77.72 392.45 2.07 -75.65 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -0.53 Total: 18.29 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 6.12 Total: -2.00 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -4.21 Total: -88.06 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.17 Total: -41.01 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.05 Total: -9.49 kcal Total: -77.72 2.07 -75.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502106238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.168 kcal (2) G-P(sol) polarization free energy of solvation -77.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds