Wall clock time and date at job start Sat Apr 11 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33657 * 125.80105 * 2 1 4 4 C 1.34219 * 110.90375 * 179.78238 * 3 2 1 5 5 C 1.34177 * 109.12710 * 0.39546 * 4 3 2 6 6 C 1.36414 * 125.79823 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19575 * 359.94905 * 6 2 1 8 8 O 1.21609 * 119.99943 * 0.02562 * 7 6 2 9 9 N 1.34783 * 120.00404 * 180.02562 * 7 6 2 10 10 C 1.46491 * 119.99946 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47583 * 34.99677 * 10 9 7 12 12 C 1.53006 * 109.47173 * 274.99479 * 10 9 7 13 13 C 1.53009 * 109.47123 * 155.00167 * 10 9 7 14 14 H 1.08997 * 109.46580 * 295.00210 * 13 10 9 15 15 C 1.53004 * 109.46835 * 54.99610 * 13 10 9 16 16 N 1.46495 * 109.47142 * 174.99620 * 13 10 9 17 17 C 1.34777 * 119.99789 * 154.99644 * 16 13 10 18 18 O 1.21287 * 119.99946 * 0.02562 * 17 16 13 19 19 C 1.50697 * 120.00251 * 179.97438 * 17 16 13 20 20 S 1.81002 * 109.47292 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99782 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00507 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99874 * 180.02562 * 21 20 19 24 24 N 1.31632 * 120.00092 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46905 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47333 * 119.99732 * 25 23 21 28 28 H 1.48501 * 109.47114 * 239.99785 * 25 23 21 29 29 H 1.08995 * 109.47629 * 269.98081 * 1 2 3 30 30 H 1.09005 * 109.46808 * 29.97675 * 1 2 3 31 31 H 1.08999 * 109.47327 * 149.97009 * 1 2 3 32 32 H 1.08002 * 125.43404 * 180.26245 * 4 3 2 33 33 H 1.08002 * 127.02646 * 179.89664 * 5 4 3 34 34 H 0.97001 * 119.99488 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.47454 * 300.00669 * 12 10 9 36 36 H 1.09007 * 109.46463 * 60.00286 * 12 10 9 37 37 H 1.09003 * 109.46978 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.46824 * 299.99991 * 15 13 10 39 39 H 1.08994 * 109.47070 * 60.00113 * 15 13 10 40 40 H 1.09002 * 109.46295 * 180.02562 * 15 13 10 41 41 H 0.97002 * 120.00375 * 335.00328 * 16 13 10 42 42 H 1.09003 * 109.47667 * 300.00708 * 19 17 16 43 43 H 1.09012 * 109.46922 * 60.00182 * 19 17 16 44 44 H 0.97001 * 119.99890 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 0.0048 5 6 3.6849 -0.5991 -0.0007 6 6 2.3049 -1.1064 -0.0005 7 6 1.8739 -2.5157 -0.0001 8 8 0.6889 -2.7892 0.0003 9 7 2.7929 -3.5016 -0.0002 10 6 2.3644 -4.9025 -0.0003 11 1 1.4531 -5.0036 -0.5897 12 6 2.0950 -5.3536 1.4367 13 6 3.4654 -5.7726 -0.6100 14 1 3.5957 -5.5107 -1.6600 15 6 4.7771 -5.5359 0.1413 16 7 3.0885 -7.1841 -0.5017 17 6 3.5959 -8.0852 -1.3660 18 8 4.3648 -7.7276 -2.2331 19 6 3.2087 -9.5373 -1.2543 20 16 4.0492 -10.4869 -2.5458 21 6 3.4328 -12.0989 -2.1904 22 1 2.7449 -12.2455 -1.3709 23 6 3.8314 -13.1804 -2.9637 24 7 4.6695 -13.0017 -3.9629 25 14 3.1774 -14.8893 -2.5874 26 1 2.2573 -14.8220 -1.4237 27 1 2.4443 -15.4101 -3.7692 28 1 4.3111 -15.7943 -2.2699 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3634 -0.8897 -0.5143 32 1 4.4172 1.4284 0.0098 33 1 4.5928 -1.1841 -0.0005 34 1 3.7381 -3.2835 -0.0001 35 1 3.0063 -5.2524 2.0262 36 1 1.3106 -4.7337 1.8711 37 1 1.7766 -6.3961 1.4366 38 1 5.0575 -4.4856 0.0607 39 1 4.6468 -5.7976 1.1913 40 1 5.5616 -6.1554 -0.2934 41 1 2.4737 -7.4701 0.1920 42 1 3.5015 -9.9173 -0.2756 43 1 2.1297 -9.6359 -1.3743 44 1 4.9477 -13.7575 -4.5036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508477738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:06 Heat of formation + Delta-G solvation = -64.650978 kcal Electronic energy + Delta-G solvation = -26272.758862 eV Core-core repulsion = 22318.079808 eV Total energy + Delta-G solvation = -3954.679053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.98565 -40.26972 -39.20341 -36.96445 -34.13802 -33.41046 -32.43552 -32.29240 -31.23068 -29.77095 -28.50538 -27.32081 -25.51355 -25.10137 -23.64636 -21.85361 -20.59822 -20.33770 -19.87960 -18.48224 -17.86860 -16.76400 -16.62112 -16.45737 -16.13635 -15.66782 -15.18719 -14.91796 -14.81275 -14.77149 -14.54290 -13.99028 -13.84040 -13.50541 -13.36976 -13.31374 -13.24743 -13.17397 -12.83948 -12.57264 -12.44878 -12.15101 -12.03063 -11.92743 -11.23375 -11.07805 -11.07213 -11.02337 -10.76115 -10.26931 -10.25339 -9.81581 -9.47874 -9.40026 -9.08912 -8.99382 -8.97247 -8.24426 -6.50845 -6.22593 -3.93053 0.97645 1.61944 2.35792 2.71498 3.03746 3.04900 3.12907 3.21275 3.28785 3.34352 3.72353 4.07923 4.19598 4.28887 4.42961 4.45648 4.65716 4.84439 4.90710 5.07210 5.09275 5.12569 5.12786 5.16552 5.20389 5.24394 5.38214 5.44515 5.47879 5.61898 5.67813 5.74580 5.80063 5.84612 5.87461 5.92759 6.12669 6.15800 6.17378 6.57872 6.58624 7.18836 7.59326 7.64878 7.92475 8.34807 8.56878 9.23048 10.84865 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030664 B = 0.001785 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.888881 B =15685.899044 C =16014.099642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.081 3.919 3 O -0.177 6.177 4 C -0.037 4.037 5 C -0.189 4.189 6 C -0.249 4.249 7 C 0.593 3.407 8 O -0.540 6.540 9 N -0.715 5.715 10 C 0.137 3.863 11 H 0.097 0.903 12 C -0.167 4.167 13 C 0.138 3.862 14 H 0.094 0.906 15 C -0.168 4.168 16 N -0.732 5.732 17 C 0.535 3.465 18 O -0.515 6.515 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.209 0.791 33 H 0.157 0.843 34 H 0.401 0.599 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 27.657 12.846 30.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.028 3.972 3 O -0.073 6.073 4 C -0.103 4.103 5 C -0.208 4.208 6 C -0.253 4.253 7 C 0.382 3.618 8 O -0.418 6.418 9 N -0.368 5.368 10 C 0.032 3.968 11 H 0.115 0.885 12 C -0.225 4.225 13 C 0.032 3.968 14 H 0.112 0.888 15 C -0.226 4.226 16 N -0.388 5.388 17 C 0.321 3.679 18 O -0.389 6.389 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.092 0.908 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.225 0.775 33 H 0.175 0.825 34 H 0.238 0.762 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.235 0.765 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.760 28.246 11.235 30.630 hybrid contribution -0.701 -1.681 1.590 2.418 sum -4.461 26.565 12.825 29.834 Atomic orbital electron populations 1.20640 0.83650 1.05245 1.04487 1.22862 0.94189 0.83082 0.97071 1.83788 1.17216 1.34984 1.71267 1.23879 0.83520 0.96428 1.06481 1.22881 0.96610 0.94633 1.06675 1.21123 0.93401 0.93772 1.17040 1.17163 0.85420 0.83696 0.75546 1.90766 1.16532 1.84001 1.50543 1.45839 1.09926 1.05427 1.75608 1.21119 0.98223 0.79862 0.97587 0.88501 1.22251 1.02590 1.01697 0.96005 1.20964 0.93152 0.81412 1.01308 0.88781 1.22267 0.97907 1.01390 1.01051 1.46077 1.50488 1.06709 1.35539 1.20331 0.79901 0.87360 0.80329 1.90703 1.33888 1.80378 1.33941 1.23538 1.05460 0.94347 1.07103 1.85394 1.59765 1.01712 1.36462 1.22911 1.32759 0.92955 1.19691 0.90846 1.24999 0.94824 0.99311 0.94497 1.70028 1.31063 1.31701 1.17495 0.86113 0.78687 0.82290 0.78379 1.19607 1.20561 1.20579 0.89245 0.90310 0.87166 0.77484 0.82524 0.76235 0.91720 0.91606 0.91346 0.92341 0.91799 0.90983 0.76547 0.89155 0.89129 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 9.89 36.01 0.36 -0.23 16 2 C 0.08 0.71 7.37 -34.97 -0.26 0.45 16 3 O -0.18 -1.41 10.52 7.63 0.08 -1.33 16 4 C -0.04 -0.22 12.03 29.30 0.35 0.13 16 5 C -0.19 -1.27 10.60 -37.45 -0.40 -1.67 16 6 C -0.25 -2.32 6.31 -103.28 -0.65 -2.97 16 7 C 0.59 6.37 7.78 -12.54 -0.10 6.27 16 8 O -0.54 -7.18 14.51 5.27 0.08 -7.10 16 9 N -0.71 -6.31 4.99 -54.90 -0.27 -6.59 16 10 C 0.14 1.32 2.62 -67.93 -0.18 1.14 16 11 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 12 C -0.17 -1.39 9.00 37.16 0.33 -1.05 16 13 C 0.14 1.52 2.62 -67.93 -0.18 1.34 16 14 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 15 C -0.17 -1.60 9.00 37.16 0.33 -1.27 16 16 N -0.73 -9.28 4.99 -53.80 -0.27 -9.55 16 17 C 0.53 9.61 7.81 -10.99 -0.09 9.53 16 18 O -0.52 -11.27 15.53 5.55 0.09 -11.19 16 19 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.53 -15.16 9.50 30.94 0.29 -14.87 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 25 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 0.93 6.49 -51.93 -0.34 0.59 16 32 H 0.21 0.41 8.06 -52.49 -0.42 -0.02 16 33 H 0.16 0.68 7.74 -52.49 -0.41 0.27 16 34 H 0.40 2.75 5.75 -40.82 -0.23 2.51 16 35 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 36 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.07 0.51 6.29 -51.93 -0.33 0.18 16 38 H 0.06 0.41 6.29 -51.93 -0.33 0.09 16 39 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.40 4.02 6.58 -40.82 -0.27 3.75 16 42 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 43 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -36.48 381.82 -6.97 -43.44 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.87 Total: 3.42 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.05 Total: -4.03 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.19 Total: -41.48 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.24 Total: -19.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.48 -6.97 -43.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508477738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.207 kcal (2) G-P(sol) polarization free energy of solvation -36.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds