Wall clock time and date at job start Sat Apr 11 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33651 * 125.80179 * 2 1 4 4 C 1.34214 * 110.91159 * 180.26847 * 3 2 1 5 5 C 1.34176 * 109.12007 * 359.76564 * 4 3 2 6 6 C 1.36412 * 125.80001 * 179.86290 * 2 1 3 7 7 C 1.47383 * 127.19675 * 0.02562 * 6 2 1 8 8 O 1.21609 * 119.99562 * 359.70749 * 7 6 2 9 9 N 1.34774 * 120.00353 * 179.71044 * 7 6 2 10 10 C 1.46497 * 120.00383 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46725 * 324.99787 * 10 9 7 12 12 C 1.52992 * 109.47081 * 84.99495 * 10 9 7 13 13 C 1.52997 * 109.47188 * 204.99951 * 10 9 7 14 14 H 1.09002 * 109.47153 * 299.99573 * 13 10 9 15 15 C 1.53000 * 109.47060 * 59.99892 * 13 10 9 16 16 N 1.46500 * 109.47007 * 179.97438 * 13 10 9 17 17 C 1.34779 * 119.99793 * 154.99772 * 16 13 10 18 18 O 1.21279 * 120.00185 * 0.02562 * 17 16 13 19 19 C 1.50702 * 119.99614 * 179.97438 * 17 16 13 20 20 S 1.81001 * 109.46685 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99680 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00521 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00061 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00049 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99905 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47503 * 89.99517 * 25 23 21 27 27 H 1.48501 * 109.47419 * 210.00116 * 25 23 21 28 28 H 1.48508 * 109.46927 * 329.99823 * 25 23 21 29 29 H 1.08996 * 109.47053 * 270.13404 * 1 2 3 30 30 H 1.08997 * 109.47228 * 30.13910 * 1 2 3 31 31 H 1.09003 * 109.47087 * 150.14079 * 1 2 3 32 32 H 1.07990 * 125.43980 * 179.76184 * 4 3 2 33 33 H 1.08001 * 127.02137 * 179.97438 * 5 4 3 34 34 H 0.97004 * 119.99693 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47066 * 180.02562 * 12 10 9 36 36 H 1.08996 * 109.47747 * 300.00111 * 12 10 9 37 37 H 1.09002 * 109.47103 * 60.00523 * 12 10 9 38 38 H 1.08992 * 109.47399 * 59.99823 * 15 13 10 39 39 H 1.09004 * 109.46724 * 180.02562 * 15 13 10 40 40 H 1.09001 * 109.47194 * 299.99650 * 15 13 10 41 41 H 0.97004 * 120.00223 * 334.99863 * 16 13 10 42 42 H 1.09002 * 109.47423 * 300.00169 * 19 17 16 43 43 H 1.09002 * 109.46795 * 60.00420 * 19 17 16 44 44 H 0.97005 * 119.99943 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7391 -0.0059 5 6 3.6849 -0.5990 -0.0047 6 6 2.3050 -1.1064 0.0026 7 6 1.8740 -2.5158 0.0055 8 8 0.6891 -2.7892 0.0110 9 7 2.7930 -3.5016 0.0020 10 6 2.3646 -4.9025 0.0043 11 1 1.4558 -5.0035 0.5976 12 6 2.0892 -5.3539 -1.4313 13 6 3.4682 -5.7723 0.6096 14 1 4.3770 -5.6713 0.0163 15 6 3.7435 -5.3208 2.0453 16 7 3.0395 -7.1732 0.6124 17 6 3.9585 -8.1591 0.6090 18 8 5.1402 -7.8866 0.6040 19 6 3.5174 -9.6001 0.6125 20 16 4.9727 -10.6764 0.6073 21 6 4.1869 -12.2534 0.6116 22 1 3.1089 -12.3197 0.6165 23 6 4.9532 -13.4107 0.6099 24 7 4.3662 -14.5888 0.6136 25 14 6.8177 -13.2962 0.6037 26 1 7.3165 -13.2648 2.0020 27 1 7.3838 -14.4766 -0.0975 28 1 7.2351 -12.0561 -0.0987 29 1 -0.3633 0.0024 1.0276 30 1 -0.3633 0.8887 -0.5160 31 1 -0.3633 -0.8913 -0.5117 32 1 4.4171 1.4285 -0.0108 33 1 4.5928 -1.1839 -0.0088 34 1 3.7382 -3.2834 -0.0027 35 1 1.7700 -6.3961 -1.4296 36 1 1.3030 -4.7343 -1.8626 37 1 2.9980 -5.2529 -2.0247 38 1 2.8348 -5.4218 2.6386 39 1 4.5301 -5.9403 2.4764 40 1 4.0623 -4.2785 2.0437 41 1 2.0943 -7.3912 0.6168 42 1 2.9240 -9.7964 1.5054 43 1 2.9156 -9.7980 -0.2745 44 1 4.9018 -15.3976 0.6128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508477741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:36 Heat of formation + Delta-G solvation = -69.088467 kcal Electronic energy + Delta-G solvation = -26319.631676 eV Core-core repulsion = 22364.760198 eV Total energy + Delta-G solvation = -3954.871477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.01498 -40.26066 -39.29617 -36.88343 -34.23073 -33.45770 -32.45052 -32.32375 -31.25093 -30.17477 -28.64971 -27.31829 -25.62579 -24.55475 -23.47939 -21.92797 -20.93544 -20.55821 -20.11076 -18.46516 -17.88523 -16.85488 -16.77263 -16.52675 -15.90767 -15.69504 -15.21828 -15.13536 -14.96462 -14.77335 -14.11530 -13.87743 -13.81333 -13.63286 -13.54973 -13.38507 -13.33938 -13.31843 -12.80836 -12.66222 -12.51852 -12.18639 -12.12338 -11.88412 -11.61216 -11.28103 -11.02208 -10.96476 -10.61733 -10.31842 -10.28113 -9.87382 -9.59832 -9.50132 -9.07965 -9.01368 -8.98030 -8.52090 -6.93391 -6.29904 -4.01867 0.94580 1.59354 2.32038 2.58418 2.88439 2.93692 3.00667 3.31402 3.37966 3.48945 3.67054 4.05182 4.19681 4.31828 4.40183 4.42391 4.69220 4.72050 4.81768 4.90221 5.05691 5.09103 5.09728 5.14743 5.22530 5.25044 5.30974 5.37615 5.47867 5.52000 5.64488 5.71277 5.74357 5.81368 5.82798 5.97876 5.99707 6.07209 6.12751 6.48867 6.55762 7.15154 7.54100 7.88563 7.93077 8.40851 8.43354 9.16132 10.79285 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.033351 B = 0.001847 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.362521 B =15159.406418 C =15656.995483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.081 3.919 3 O -0.177 6.177 4 C -0.037 4.037 5 C -0.189 4.189 6 C -0.249 4.249 7 C 0.595 3.405 8 O -0.540 6.540 9 N -0.713 5.713 10 C 0.138 3.862 11 H 0.095 0.905 12 C -0.164 4.164 13 C 0.138 3.862 14 H 0.093 0.907 15 C -0.164 4.164 16 N -0.728 5.728 17 C 0.535 3.465 18 O -0.518 6.518 19 C -0.125 4.125 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.209 0.791 33 H 0.158 0.842 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.401 0.599 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 32.087 -1.442 32.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.028 3.972 3 O -0.073 6.073 4 C -0.103 4.103 5 C -0.208 4.208 6 C -0.253 4.253 7 C 0.383 3.617 8 O -0.419 6.419 9 N -0.365 5.365 10 C 0.033 3.967 11 H 0.113 0.887 12 C -0.222 4.222 13 C 0.032 3.968 14 H 0.111 0.889 15 C -0.222 4.222 16 N -0.383 5.383 17 C 0.321 3.679 18 O -0.392 6.392 19 C -0.275 4.275 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.225 0.775 33 H 0.175 0.825 34 H 0.236 0.764 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.235 0.765 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.565 32.411 -1.448 32.762 hybrid contribution -0.256 -0.733 0.063 0.778 sum -4.821 31.678 -1.386 32.073 Atomic orbital electron populations 1.20637 0.83659 1.05180 1.04530 1.22862 0.94186 0.83096 0.97080 1.83785 1.17226 1.34992 1.71255 1.23880 0.83504 0.96450 1.06479 1.22890 0.96633 0.94629 1.06630 1.21119 0.93394 0.93759 1.17078 1.17126 0.85371 0.83632 0.75539 1.90765 1.16505 1.83986 1.50647 1.45689 1.09857 1.05426 1.75529 1.21146 0.98046 0.79834 0.97698 0.88672 1.22181 1.02381 1.02106 0.95528 1.21011 0.97479 0.81076 0.97217 0.88937 1.22191 1.02629 1.01324 0.96054 1.45897 1.10033 1.04774 1.77614 1.20272 0.85908 0.86823 0.74910 1.90695 1.16881 1.83959 1.47680 1.23284 1.04815 0.93495 1.05920 1.84775 1.08412 1.00891 1.97432 1.22318 0.96603 0.89199 1.58811 0.89358 1.24718 0.99201 0.94223 0.93198 1.69939 1.36315 0.97355 1.48014 0.86732 0.85158 0.80009 0.79914 1.19226 1.19951 1.15948 0.89212 0.90332 0.87204 0.77495 0.82472 0.76366 0.90992 0.91843 0.92160 0.92282 0.91347 0.91921 0.76468 0.88417 0.88373 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 9.89 36.01 0.36 -0.19 16 2 C 0.08 0.68 7.37 -34.97 -0.26 0.42 16 3 O -0.18 -1.36 10.52 7.66 0.08 -1.28 16 4 C -0.04 -0.21 12.03 29.30 0.35 0.14 16 5 C -0.19 -1.21 10.60 -37.45 -0.40 -1.60 16 6 C -0.25 -2.20 6.31 -103.27 -0.65 -2.85 16 7 C 0.59 5.99 7.78 -12.54 -0.10 5.90 16 8 O -0.54 -6.79 14.51 5.27 0.08 -6.72 16 9 N -0.71 -5.87 4.38 -54.90 -0.24 -6.11 16 10 C 0.14 1.23 2.21 -67.94 -0.15 1.08 16 11 H 0.10 0.93 7.58 -51.93 -0.39 0.53 16 12 C -0.16 -1.50 9.33 37.15 0.35 -1.16 16 13 C 0.14 1.41 2.21 -67.93 -0.15 1.26 16 14 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 15 C -0.16 -1.63 9.33 37.16 0.35 -1.28 16 16 N -0.73 -8.55 4.38 -53.81 -0.24 -8.79 16 17 C 0.53 8.92 7.81 -10.98 -0.09 8.84 16 18 O -0.52 -10.51 15.53 5.56 0.09 -10.42 16 19 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 20 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 21 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 22 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 23 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 24 N -0.88 -26.41 13.97 55.49 0.78 -25.64 16 25 Si 0.86 21.63 27.74 -169.99 -4.71 16.91 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 0.86 6.49 -51.93 -0.34 0.52 16 32 H 0.21 0.36 8.06 -52.49 -0.42 -0.06 16 33 H 0.16 0.64 7.74 -52.49 -0.41 0.23 16 34 H 0.40 2.56 7.56 -40.82 -0.31 2.25 16 35 H 0.07 0.64 7.45 -51.93 -0.39 0.26 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.51 7.45 -51.93 -0.39 0.13 16 41 H 0.40 3.73 8.39 -40.82 -0.34 3.39 16 42 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 43 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -35.80 386.84 -6.63 -42.42 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.34 Total: 2.76 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 0.05 Total: -3.45 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.30 Total: -40.54 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.24 Total: -18.42 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.80 -6.63 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508477741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.665 kcal (2) G-P(sol) polarization free energy of solvation -35.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds