Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33651 * 125.80179 * 2 1 4 4 C 1.34214 * 110.91159 * 180.26847 * 3 2 1 5 5 C 1.34176 * 109.12007 * 359.76564 * 4 3 2 6 6 C 1.36412 * 125.80001 * 179.86290 * 2 1 3 7 7 C 1.47383 * 127.19675 * 0.02562 * 6 2 1 8 8 O 1.21609 * 119.99562 * 359.70749 * 7 6 2 9 9 N 1.34774 * 120.00353 * 179.71044 * 7 6 2 10 10 C 1.46497 * 120.00383 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46725 * 324.99787 * 10 9 7 12 12 C 1.52992 * 109.47081 * 84.99495 * 10 9 7 13 13 C 1.52997 * 109.47188 * 204.99951 * 10 9 7 14 14 H 1.09002 * 109.47153 * 299.99573 * 13 10 9 15 15 C 1.53000 * 109.47060 * 59.99892 * 13 10 9 16 16 N 1.46500 * 109.47007 * 179.97438 * 13 10 9 17 17 C 1.34779 * 119.99793 * 154.99772 * 16 13 10 18 18 O 1.21279 * 120.00185 * 0.02562 * 17 16 13 19 19 C 1.50702 * 119.99614 * 179.97438 * 17 16 13 20 20 S 1.81001 * 109.46685 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99680 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00521 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00061 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00049 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99905 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47503 * 89.99517 * 25 23 21 27 27 H 1.48501 * 109.47419 * 210.00116 * 25 23 21 28 28 H 1.48508 * 109.46927 * 329.99823 * 25 23 21 29 29 H 1.08996 * 109.47053 * 270.13404 * 1 2 3 30 30 H 1.08997 * 109.47228 * 30.13910 * 1 2 3 31 31 H 1.09003 * 109.47087 * 150.14079 * 1 2 3 32 32 H 1.07990 * 125.43980 * 179.76184 * 4 3 2 33 33 H 1.08001 * 127.02137 * 179.97438 * 5 4 3 34 34 H 0.97004 * 119.99693 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47066 * 180.02562 * 12 10 9 36 36 H 1.08996 * 109.47747 * 300.00111 * 12 10 9 37 37 H 1.09002 * 109.47103 * 60.00523 * 12 10 9 38 38 H 1.08992 * 109.47399 * 59.99823 * 15 13 10 39 39 H 1.09004 * 109.46724 * 180.02562 * 15 13 10 40 40 H 1.09001 * 109.47194 * 299.99650 * 15 13 10 41 41 H 0.97004 * 120.00223 * 334.99863 * 16 13 10 42 42 H 1.09002 * 109.47423 * 300.00169 * 19 17 16 43 43 H 1.09002 * 109.46795 * 60.00420 * 19 17 16 44 44 H 0.97005 * 119.99943 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7391 -0.0059 5 6 3.6849 -0.5990 -0.0047 6 6 2.3050 -1.1064 0.0026 7 6 1.8740 -2.5158 0.0055 8 8 0.6891 -2.7892 0.0110 9 7 2.7930 -3.5016 0.0020 10 6 2.3646 -4.9025 0.0043 11 1 1.4558 -5.0035 0.5976 12 6 2.0892 -5.3539 -1.4313 13 6 3.4682 -5.7723 0.6096 14 1 4.3770 -5.6713 0.0163 15 6 3.7435 -5.3208 2.0453 16 7 3.0395 -7.1732 0.6124 17 6 3.9585 -8.1591 0.6090 18 8 5.1402 -7.8866 0.6040 19 6 3.5174 -9.6001 0.6125 20 16 4.9727 -10.6764 0.6073 21 6 4.1869 -12.2534 0.6116 22 1 3.1089 -12.3197 0.6165 23 6 4.9532 -13.4107 0.6099 24 7 4.3662 -14.5888 0.6136 25 14 6.8177 -13.2962 0.6037 26 1 7.3165 -13.2648 2.0020 27 1 7.3838 -14.4766 -0.0975 28 1 7.2351 -12.0561 -0.0987 29 1 -0.3633 0.0024 1.0276 30 1 -0.3633 0.8887 -0.5160 31 1 -0.3633 -0.8913 -0.5117 32 1 4.4171 1.4285 -0.0108 33 1 4.5928 -1.1839 -0.0088 34 1 3.7382 -3.2834 -0.0027 35 1 1.7700 -6.3961 -1.4296 36 1 1.3030 -4.7343 -1.8626 37 1 2.9980 -5.2529 -2.0247 38 1 2.8348 -5.4218 2.6386 39 1 4.5301 -5.9403 2.4764 40 1 4.0623 -4.2785 2.0437 41 1 2.0943 -7.3912 0.6168 42 1 2.9240 -9.7964 1.5054 43 1 2.9156 -9.7980 -0.2745 44 1 4.9018 -15.3976 0.6128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508477741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = -94.405536 kcal Electronic energy + Delta-G solvation = -26320.729506 eV Core-core repulsion = 22364.760198 eV Total energy + Delta-G solvation = -3955.969308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.53364 -41.21351 -40.37519 -37.87309 -35.20263 -34.66243 -34.07270 -32.87008 -32.29812 -30.98864 -29.93364 -27.86905 -27.81656 -25.29500 -24.25642 -22.62621 -21.82513 -21.52579 -20.85921 -19.89779 -18.98795 -18.09710 -17.43557 -17.33230 -17.08498 -16.87892 -16.53858 -16.46966 -15.91418 -15.73313 -15.39812 -15.02684 -14.89986 -14.75078 -14.45321 -14.37550 -14.12082 -13.86675 -13.79221 -13.75720 -13.33849 -13.28691 -13.27440 -13.00971 -12.73491 -12.67618 -12.62481 -12.50770 -11.87181 -11.77746 -11.16351 -11.15402 -10.96810 -10.84018 -10.52683 -10.36525 -10.06516 -9.52457 -8.97976 -8.50648 -6.21155 0.32484 0.98824 1.13389 1.32212 1.45901 1.53469 1.56840 1.79247 2.01835 2.25444 2.30381 2.48534 2.74153 2.87619 3.38520 3.61465 3.80278 3.86625 3.87296 3.90668 4.08987 4.25075 4.36166 4.39980 4.45919 4.49658 4.62200 4.63604 4.68773 4.70472 4.75620 4.85212 4.89376 4.97920 5.19718 5.21259 5.24301 5.32572 5.39320 5.49479 5.71466 6.04166 6.12589 6.42147 6.49405 6.94468 7.15756 7.18401 8.61686 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.033351 B = 0.001847 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.362521 B =15159.406418 C =15656.995483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.067 3.933 3 O -0.184 6.184 4 C -0.033 4.033 5 C -0.197 4.197 6 C -0.271 4.271 7 C 0.593 3.407 8 O -0.571 6.571 9 N -0.703 5.703 10 C 0.149 3.851 11 H 0.092 0.908 12 C -0.161 4.161 13 C 0.143 3.857 14 H 0.086 0.914 15 C -0.159 4.159 16 N -0.706 5.706 17 C 0.542 3.458 18 O -0.556 6.556 19 C -0.113 4.113 20 S -0.172 6.172 21 C -0.530 4.530 22 H 0.062 0.938 23 C 0.044 3.956 24 N -0.917 5.917 25 Si 0.915 3.085 26 H -0.263 1.263 27 H -0.260 1.260 28 H -0.235 1.235 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.246 0.754 33 H 0.179 0.821 34 H 0.412 0.588 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.416 0.584 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.812 34.362 -1.439 34.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.014 3.986 3 O -0.080 6.080 4 C -0.097 4.097 5 C -0.216 4.216 6 C -0.276 4.276 7 C 0.382 3.618 8 O -0.452 6.452 9 N -0.355 5.355 10 C 0.044 3.956 11 H 0.110 0.890 12 C -0.219 4.219 13 C 0.038 3.962 14 H 0.104 0.896 15 C -0.217 4.217 16 N -0.360 5.360 17 C 0.328 3.672 18 O -0.434 6.434 19 C -0.264 4.264 20 S 0.054 5.946 21 C -0.677 4.677 22 H 0.080 0.920 23 C -0.161 4.161 24 N -0.555 5.555 25 Si 0.737 3.263 26 H -0.187 1.187 27 H -0.185 1.185 28 H -0.159 1.159 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.262 0.738 33 H 0.197 0.803 34 H 0.249 0.751 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.253 0.747 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.782 34.710 -1.446 34.945 hybrid contribution -0.632 -1.303 0.062 1.450 sum -4.415 33.407 -1.385 33.725 Atomic orbital electron populations 1.20628 0.83054 1.05243 1.04915 1.23150 0.94933 0.83344 0.97174 1.83798 1.18162 1.34850 1.71237 1.24672 0.83399 0.97048 1.04628 1.23180 0.96261 0.95229 1.06962 1.21227 0.95006 0.93127 1.18234 1.17354 0.85059 0.84375 0.74976 1.90747 1.17780 1.84513 1.52193 1.45568 1.10294 1.04778 1.74898 1.20958 0.97243 0.80017 0.97423 0.88975 1.22152 1.02126 1.02158 0.95467 1.21061 0.97589 0.79913 0.97657 0.89595 1.22141 1.02117 1.02090 0.95356 1.45653 1.10139 1.04726 1.75482 1.19842 0.85799 0.86614 0.74958 1.90690 1.18449 1.84259 1.49958 1.23284 1.02041 0.93592 1.07512 1.84662 1.12149 1.00170 1.97581 1.22480 0.95671 0.91388 1.58184 0.92014 1.25586 1.03633 0.93975 0.92935 1.70021 1.38161 0.98175 1.49170 0.85854 0.79880 0.80354 0.80192 1.18728 1.18471 1.15902 0.88642 0.88550 0.88778 0.73839 0.80341 0.75101 0.90646 0.92586 0.92123 0.91773 0.93543 0.89920 0.74693 0.86932 0.86749 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.89 71.24 0.70 -0.34 16 2 C 0.07 1.07 7.37 25.26 0.19 1.25 16 3 O -0.18 -2.53 10.52 4.49 0.05 -2.48 16 4 C -0.03 -0.28 12.03 66.89 0.80 0.52 16 5 C -0.20 -2.09 10.60 23.65 0.25 -1.84 16 6 C -0.27 -4.49 6.31 -18.99 -0.12 -4.61 16 7 C 0.59 11.42 7.78 86.65 0.67 12.09 16 8 O -0.57 -14.24 14.51 -4.06 -0.06 -14.29 16 9 N -0.70 -10.45 4.38 -445.87 -1.95 -12.40 16 10 C 0.15 2.42 2.21 44.99 0.10 2.52 16 11 H 0.09 1.63 7.58 -2.39 -0.02 1.62 16 12 C -0.16 -2.72 9.33 71.98 0.67 -2.04 16 13 C 0.14 2.66 2.21 44.99 0.10 2.76 16 14 H 0.09 1.81 7.58 -2.39 -0.02 1.79 16 15 C -0.16 -2.86 9.33 71.98 0.67 -2.19 16 16 N -0.71 -15.17 4.38 -442.53 -1.94 -17.11 16 17 C 0.54 17.28 7.81 87.66 0.68 17.96 16 18 O -0.56 -22.01 15.53 -3.03 -0.05 -22.05 16 19 C -0.11 -4.09 6.16 71.24 0.44 -3.65 16 20 S -0.17 -8.49 18.55 -56.49 -1.05 -9.54 16 21 C -0.53 -30.53 10.04 67.96 0.68 -29.85 16 22 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 23 C 0.04 2.57 5.50 84.86 0.47 3.04 16 24 N -0.92 -55.67 13.97 21.65 0.30 -55.37 16 25 Si 0.92 44.60 27.74 68.60 1.90 46.50 16 26 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 28 H -0.24 -11.37 6.74 99.48 0.67 -10.70 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.50 6.49 -2.39 -0.02 1.49 16 32 H 0.25 -0.06 8.06 -2.92 -0.02 -0.08 16 33 H 0.18 0.94 7.74 -2.91 -0.02 0.92 16 34 H 0.41 4.37 7.56 -92.71 -0.70 3.67 16 35 H 0.07 1.21 7.45 -2.39 -0.02 1.19 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.16 7.45 -2.39 -0.02 1.14 16 41 H 0.42 6.71 8.39 -92.71 -0.78 5.94 16 42 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 43 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 44 H 0.28 15.52 8.31 -92.70 -0.77 14.75 16 Total: -1.00 -78.23 386.84 3.04 -75.18 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.48 Total: 15.93 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 6.31 Total: -4.37 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -3.59 Total: -84.88 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.06 Total: -38.83 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.90 Total: 46.50 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.05 Total: -9.54 kcal Total: -78.23 3.04 -75.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508477741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.221 kcal (2) G-P(sol) polarization free energy of solvation -78.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds