Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33653 * 125.80111 * 2 1 4 4 C 1.34214 * 110.90844 * 179.97438 * 3 2 1 5 5 C 1.34175 * 109.12584 * 359.70622 * 4 3 2 6 6 C 1.36419 * 125.80198 * 179.97438 * 2 1 3 7 7 C 1.47377 * 127.19269 * 0.02562 * 6 2 1 8 8 O 1.21613 * 119.99686 * 359.97438 * 7 6 2 9 9 N 1.34777 * 119.99975 * 179.97438 * 7 6 2 10 10 C 1.46496 * 120.00105 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47535 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.46929 * 64.99145 * 11 10 9 13 13 C 1.52997 * 109.47317 * 185.00041 * 11 10 9 14 14 N 1.46506 * 109.46684 * 305.00097 * 11 10 9 15 15 C 1.46505 * 119.99873 * 299.99551 * 14 11 10 16 16 C 1.34771 * 120.00092 * 119.99866 * 14 11 10 17 17 O 1.21287 * 120.00010 * 359.97438 * 16 14 11 18 18 C 1.50696 * 120.00122 * 179.97438 * 16 14 11 19 19 S 1.80999 * 109.47425 * 179.97438 * 18 16 14 20 20 C 1.76202 * 100.00373 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99772 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00011 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00093 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99832 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46893 * 89.99551 * 24 22 20 26 26 H 1.48499 * 109.47009 * 209.99758 * 24 22 20 27 27 H 1.48499 * 109.47212 * 329.99807 * 24 22 20 28 28 H 1.09006 * 109.47137 * 269.99938 * 1 2 3 29 29 H 1.08997 * 109.47288 * 29.99942 * 1 2 3 30 30 H 1.08998 * 109.46972 * 150.00611 * 1 2 3 31 31 H 1.08004 * 125.43448 * 179.97438 * 4 3 2 32 32 H 1.07995 * 127.02644 * 180.27288 * 5 4 3 33 33 H 0.97001 * 119.99516 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47174 * 59.99261 * 10 9 7 35 35 H 1.09000 * 109.47051 * 299.99828 * 10 9 7 36 36 H 1.09002 * 109.47153 * 299.99641 * 13 11 10 37 37 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 38 38 H 1.09004 * 109.47261 * 59.99813 * 13 11 10 39 39 H 1.08999 * 109.46723 * 90.00515 * 15 14 11 40 40 H 1.08997 * 109.46979 * 210.00219 * 15 14 11 41 41 H 1.09005 * 109.46961 * 330.00570 * 15 14 11 42 42 H 1.09000 * 109.47333 * 300.00318 * 18 16 14 43 43 H 1.09005 * 109.46872 * 59.99879 * 18 16 14 44 44 H 0.97005 * 119.99923 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 0.0006 5 6 3.6849 -0.5990 0.0074 6 6 2.3050 -1.1064 0.0005 7 6 1.8740 -2.5158 0.0006 8 8 0.6890 -2.7891 0.0007 9 7 2.7931 -3.5015 0.0006 10 6 2.3647 -4.9024 0.0013 11 6 3.5949 -5.8121 0.0018 12 1 4.1453 -5.6783 0.9330 13 6 3.1507 -7.2708 -0.1233 14 7 4.4586 -5.4658 -1.1299 15 6 3.9465 -5.5638 -2.4990 16 6 5.7241 -5.0573 -0.9114 17 8 6.1479 -4.9758 0.2221 18 6 6.6127 -4.7017 -2.0754 19 16 8.2377 -4.1937 -1.4610 20 6 9.0466 -3.8450 -2.9870 21 1 8.5177 -3.9724 -3.9200 22 6 10.3638 -3.4075 -2.9901 23 7 11.0086 -3.2527 -1.8530 24 14 11.2216 -3.0385 -4.6080 25 1 11.0082 -1.6136 -4.9676 26 1 12.6764 -3.3013 -4.4681 27 1 10.6620 -3.9073 -5.6744 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 4.4172 1.4286 0.0003 32 1 4.5928 -1.1839 0.0137 33 1 3.7382 -3.2833 0.0001 34 1 1.7666 -5.0999 -0.8883 35 1 1.7674 -5.0993 0.8916 36 1 2.5081 -7.5284 0.7187 37 1 4.0272 -7.9187 -0.1234 38 1 2.6003 -7.4045 -1.0546 39 1 3.4962 -4.6140 -2.7873 40 1 4.7666 -5.7980 -3.1777 41 1 3.1957 -6.3524 -2.5505 42 1 6.7247 -5.5694 -2.7255 43 1 6.1647 -3.8821 -2.6374 44 1 11.9291 -2.9466 -1.8552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508728689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -59.779079 kcal Electronic energy + Delta-G solvation = -27280.518822 eV Core-core repulsion = 23326.051030 eV Total energy + Delta-G solvation = -3954.467792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.68389 -40.14470 -39.13919 -36.54644 -34.31277 -33.18164 -32.47812 -32.21442 -31.78023 -28.80358 -27.58621 -26.93070 -26.17070 -25.53298 -23.19436 -21.83214 -21.04025 -19.98689 -19.09785 -17.99104 -17.78525 -17.01073 -16.47518 -16.31961 -16.07443 -15.56244 -15.36608 -14.96880 -14.84626 -14.57450 -14.17172 -13.66625 -13.44982 -13.33658 -13.23507 -13.20517 -13.08250 -12.98471 -12.87739 -12.59124 -12.37520 -12.29536 -12.04277 -11.92524 -11.82992 -11.12764 -11.09927 -11.06009 -10.79797 -10.08914 -9.94375 -9.85707 -9.48314 -9.18451 -9.11354 -8.68746 -8.67119 -8.29386 -6.56234 -6.26708 -3.97758 1.22487 1.96250 2.65110 2.80137 2.91272 3.14363 3.18686 3.23171 3.26648 3.27857 3.53811 4.15523 4.38348 4.46605 4.66401 4.73606 4.84377 4.99922 5.03164 5.05805 5.08788 5.09338 5.29320 5.32888 5.40154 5.42084 5.45666 5.46881 5.52267 5.54630 5.68400 5.72066 5.81575 5.87282 5.96011 5.98823 6.07078 6.18105 6.30860 6.56285 6.88043 7.39552 7.43498 7.54964 8.12609 8.30244 8.42423 9.18987 10.80575 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.003294 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.695550 B = 8498.547957 C =10570.866786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.075 3.925 3 O -0.177 6.177 4 C -0.037 4.037 5 C -0.184 4.184 6 C -0.249 4.249 7 C 0.593 3.407 8 O -0.550 6.550 9 N -0.717 5.717 10 C 0.114 3.886 11 C 0.122 3.878 12 H 0.109 0.891 13 C -0.157 4.157 14 N -0.619 5.619 15 C 0.078 3.922 16 C 0.532 3.468 17 O -0.516 6.516 18 C -0.151 4.151 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.211 0.789 32 H 0.160 0.840 33 H 0.406 0.594 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.426 0.927 1.780 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.021 3.979 3 O -0.073 6.073 4 C -0.102 4.102 5 C -0.203 4.203 6 C -0.253 4.253 7 C 0.382 3.618 8 O -0.430 6.430 9 N -0.368 5.368 10 C -0.011 4.011 11 C 0.018 3.982 12 H 0.127 0.873 13 C -0.216 4.216 14 N -0.356 5.356 15 C -0.065 4.065 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.302 4.302 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.227 0.773 32 H 0.178 0.822 33 H 0.242 0.758 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.549 1.165 3.547 20.885 hybrid contribution 0.917 0.067 -2.488 2.653 sum -19.632 1.233 1.058 19.699 Atomic orbital electron populations 1.20583 0.83871 1.04938 1.04272 1.22779 0.94057 0.83223 0.97813 1.83766 1.17325 1.34882 1.71366 1.23931 0.83245 0.96576 1.06445 1.23007 0.96751 0.94778 1.05779 1.21127 0.93530 0.93714 1.16938 1.17170 0.85241 0.83818 0.75601 1.90727 1.16547 1.84232 1.51502 1.45721 1.10317 1.05722 1.75029 1.21739 0.96446 0.80105 1.02801 1.21303 0.90657 0.94129 0.92081 0.87256 1.22053 1.02226 0.94748 1.02553 1.47953 1.12440 1.68369 1.06788 1.21765 1.00422 1.01694 0.82667 1.20431 0.80992 0.75753 0.90825 1.90708 1.72936 1.51571 1.23793 1.23571 1.02889 1.04337 0.99368 1.85370 1.00354 1.85855 1.11748 1.22850 1.00308 1.52336 0.92900 0.90967 1.24979 0.96272 0.94786 0.97444 1.70012 1.11496 1.43377 1.25347 0.86183 0.78529 0.78781 0.82111 1.20249 1.20739 1.19685 0.89460 0.90487 0.87412 0.77256 0.82201 0.75843 0.91090 0.90397 0.91118 0.91369 0.91978 0.92762 0.90525 0.91112 0.89190 0.89267 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.89 36.01 0.36 -0.37 16 2 C 0.07 0.88 7.37 -34.96 -0.26 0.63 16 3 O -0.18 -2.05 10.52 7.66 0.08 -1.97 16 4 C -0.04 -0.39 12.03 29.30 0.35 -0.04 16 5 C -0.18 -2.25 10.60 -37.45 -0.40 -2.65 16 6 C -0.25 -3.26 6.31 -103.27 -0.65 -3.91 16 7 C 0.59 8.16 7.81 -12.54 -0.10 8.06 16 8 O -0.55 -8.38 14.85 5.27 0.08 -8.30 16 9 N -0.72 -8.94 5.38 -61.40 -0.33 -9.27 16 10 C 0.11 1.21 4.97 -4.04 -0.02 1.19 16 11 C 0.12 1.34 2.80 -67.93 -0.19 1.15 16 12 H 0.11 1.42 6.90 -51.93 -0.36 1.06 16 13 C -0.16 -1.33 9.17 37.16 0.34 -0.99 16 14 N -0.62 -7.79 2.24 -173.93 -0.39 -8.18 16 15 C 0.08 0.77 9.40 59.85 0.56 1.34 16 16 C 0.53 9.16 7.40 -10.99 -0.08 9.08 16 17 O -0.52 -10.68 15.19 5.55 0.08 -10.59 16 18 C -0.15 -2.88 4.71 36.00 0.17 -2.71 16 19 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 20 C -0.54 -14.78 9.50 30.94 0.29 -14.49 16 21 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.49 13.22 55.49 0.73 -24.76 16 24 Si 0.92 20.93 29.55 -169.99 -5.02 15.90 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.11 1.09 6.49 -51.93 -0.34 0.76 16 31 H 0.21 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.16 1.94 7.74 -52.49 -0.41 1.53 16 33 H 0.41 5.38 7.04 -40.82 -0.29 5.09 16 34 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.45 6.66 -51.93 -0.35 0.10 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 41 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 42 H 0.09 1.61 7.40 -51.92 -0.38 1.23 16 43 H 0.09 1.58 8.11 -51.91 -0.42 1.16 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -34.56 384.38 -7.02 -41.58 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.12 Total: 5.30 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 0.28 Total: -1.74 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.01 Total: -42.21 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.24 Total: -20.86 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.56 -7.02 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508728689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.198 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds