Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33653 * 125.80111 * 2 1 4 4 C 1.34214 * 110.90844 * 179.97438 * 3 2 1 5 5 C 1.34175 * 109.12584 * 359.70622 * 4 3 2 6 6 C 1.36419 * 125.80198 * 179.97438 * 2 1 3 7 7 C 1.47377 * 127.19269 * 0.02562 * 6 2 1 8 8 O 1.21613 * 119.99686 * 359.97438 * 7 6 2 9 9 N 1.34777 * 119.99975 * 179.97438 * 7 6 2 10 10 C 1.46496 * 120.00105 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47535 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.46929 * 64.99145 * 11 10 9 13 13 C 1.52997 * 109.47317 * 185.00041 * 11 10 9 14 14 N 1.46506 * 109.46684 * 305.00097 * 11 10 9 15 15 C 1.46505 * 119.99873 * 299.99551 * 14 11 10 16 16 C 1.34771 * 120.00092 * 119.99866 * 14 11 10 17 17 O 1.21287 * 120.00010 * 359.97438 * 16 14 11 18 18 C 1.50696 * 120.00122 * 179.97438 * 16 14 11 19 19 S 1.80999 * 109.47425 * 179.97438 * 18 16 14 20 20 C 1.76202 * 100.00373 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99772 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00011 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00093 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99832 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46893 * 89.99551 * 24 22 20 26 26 H 1.48499 * 109.47009 * 209.99758 * 24 22 20 27 27 H 1.48499 * 109.47212 * 329.99807 * 24 22 20 28 28 H 1.09006 * 109.47137 * 269.99938 * 1 2 3 29 29 H 1.08997 * 109.47288 * 29.99942 * 1 2 3 30 30 H 1.08998 * 109.46972 * 150.00611 * 1 2 3 31 31 H 1.08004 * 125.43448 * 179.97438 * 4 3 2 32 32 H 1.07995 * 127.02644 * 180.27288 * 5 4 3 33 33 H 0.97001 * 119.99516 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47174 * 59.99261 * 10 9 7 35 35 H 1.09000 * 109.47051 * 299.99828 * 10 9 7 36 36 H 1.09002 * 109.47153 * 299.99641 * 13 11 10 37 37 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 38 38 H 1.09004 * 109.47261 * 59.99813 * 13 11 10 39 39 H 1.08999 * 109.46723 * 90.00515 * 15 14 11 40 40 H 1.08997 * 109.46979 * 210.00219 * 15 14 11 41 41 H 1.09005 * 109.46961 * 330.00570 * 15 14 11 42 42 H 1.09000 * 109.47333 * 300.00318 * 18 16 14 43 43 H 1.09005 * 109.46872 * 59.99879 * 18 16 14 44 44 H 0.97005 * 119.99923 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 0.0006 5 6 3.6849 -0.5990 0.0074 6 6 2.3050 -1.1064 0.0005 7 6 1.8740 -2.5158 0.0006 8 8 0.6890 -2.7891 0.0007 9 7 2.7931 -3.5015 0.0006 10 6 2.3647 -4.9024 0.0013 11 6 3.5949 -5.8121 0.0018 12 1 4.1453 -5.6783 0.9330 13 6 3.1507 -7.2708 -0.1233 14 7 4.4586 -5.4658 -1.1299 15 6 3.9465 -5.5638 -2.4990 16 6 5.7241 -5.0573 -0.9114 17 8 6.1479 -4.9758 0.2221 18 6 6.6127 -4.7017 -2.0754 19 16 8.2377 -4.1937 -1.4610 20 6 9.0466 -3.8450 -2.9870 21 1 8.5177 -3.9724 -3.9200 22 6 10.3638 -3.4075 -2.9901 23 7 11.0086 -3.2527 -1.8530 24 14 11.2216 -3.0385 -4.6080 25 1 11.0082 -1.6136 -4.9676 26 1 12.6764 -3.3013 -4.4681 27 1 10.6620 -3.9073 -5.6744 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 4.4172 1.4286 0.0003 32 1 4.5928 -1.1839 0.0137 33 1 3.7382 -3.2833 0.0001 34 1 1.7666 -5.0999 -0.8883 35 1 1.7674 -5.0993 0.8916 36 1 2.5081 -7.5284 0.7187 37 1 4.0272 -7.9187 -0.1234 38 1 2.6003 -7.4045 -1.0546 39 1 3.4962 -4.6140 -2.7873 40 1 4.7666 -5.7980 -3.1777 41 1 3.1957 -6.3524 -2.5505 42 1 6.7247 -5.5694 -2.7255 43 1 6.1647 -3.8821 -2.6374 44 1 11.9291 -2.9466 -1.8552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508728689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -82.713911 kcal Electronic energy + Delta-G solvation = -27281.513351 eV Core-core repulsion = 23326.051030 eV Total energy + Delta-G solvation = -3955.462321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.58247 -41.29602 -40.27452 -37.71186 -35.38512 -34.57806 -34.12099 -33.15442 -32.68901 -30.21302 -28.42772 -27.87328 -27.64795 -27.00258 -24.13878 -22.90584 -21.97949 -21.01643 -20.26116 -19.58685 -18.90111 -18.32809 -17.39099 -17.36979 -17.08003 -16.87614 -16.74963 -16.48752 -16.20845 -15.74446 -15.49971 -14.66782 -14.64217 -14.53046 -14.41400 -14.13531 -13.99901 -13.89432 -13.79026 -13.76034 -13.52825 -13.19524 -13.11069 -13.07768 -12.89579 -12.82555 -12.70499 -12.58691 -11.95638 -11.70530 -11.14395 -11.13803 -10.91183 -10.88956 -10.25651 -10.18564 -9.76494 -9.57360 -8.65098 -8.34277 -6.11447 0.28260 1.04908 1.25648 1.42005 1.45635 1.54377 1.55816 1.79249 2.03228 2.23378 2.26098 2.28213 3.00108 3.26410 3.54001 3.56438 3.70861 3.82658 3.85804 4.06748 4.17964 4.20961 4.28029 4.33512 4.48163 4.54704 4.58523 4.61997 4.63682 4.65480 4.73826 4.78868 4.86600 4.89459 5.02742 5.17925 5.24962 5.28429 5.37152 5.42535 5.56310 5.97722 6.19799 6.22685 6.37995 7.07628 7.08272 7.11238 8.74531 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.003294 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.695550 B = 8498.547957 C =10570.866786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.074 3.926 3 O -0.178 6.178 4 C -0.027 4.027 5 C -0.207 4.207 6 C -0.275 4.275 7 C 0.590 3.410 8 O -0.568 6.568 9 N -0.716 5.716 10 C 0.117 3.883 11 C 0.125 3.875 12 H 0.085 0.915 13 C -0.150 4.150 14 N -0.603 5.603 15 C 0.070 3.930 16 C 0.533 3.467 17 O -0.559 6.559 18 C -0.126 4.126 19 S -0.142 6.142 20 C -0.546 4.546 21 H 0.080 0.920 22 C 0.016 3.984 23 N -0.910 5.910 24 Si 0.994 3.006 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.259 1.259 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.242 0.758 32 H 0.153 0.847 33 H 0.401 0.599 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.182 0.892 -0.079 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.020 3.980 3 O -0.074 6.074 4 C -0.092 4.092 5 C -0.226 4.226 6 C -0.280 4.280 7 C 0.380 3.620 8 O -0.450 6.450 9 N -0.366 5.366 10 C -0.007 4.007 11 C 0.021 3.979 12 H 0.103 0.897 13 C -0.208 4.208 14 N -0.337 5.337 15 C -0.072 4.072 16 C 0.321 3.679 17 O -0.437 6.437 18 C -0.277 4.277 19 S 0.085 5.915 20 C -0.694 4.694 21 H 0.098 0.902 22 C -0.189 4.189 23 N -0.546 5.546 24 Si 0.816 3.184 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.183 1.183 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.258 0.742 32 H 0.171 0.829 33 H 0.236 0.764 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.355 1.102 1.666 22.444 hybrid contribution 1.334 0.056 -1.880 2.306 sum -21.021 1.158 -0.214 21.054 Atomic orbital electron populations 1.20660 0.82056 1.05516 1.05157 1.23270 0.95174 0.82913 0.96627 1.83793 1.17633 1.34780 1.71195 1.24523 0.83613 0.96582 1.04483 1.23048 0.96393 0.95663 1.07489 1.21278 0.94248 0.93920 1.18510 1.17299 0.85095 0.84285 0.75343 1.90705 1.17076 1.84573 1.52674 1.45798 1.09870 1.06418 1.74557 1.21827 0.96176 0.78920 1.03745 1.21406 0.90023 0.96081 0.90351 0.89654 1.22024 1.02259 0.92044 1.04521 1.47896 1.10860 1.66301 1.08692 1.22037 1.01276 1.03199 0.80718 1.20106 0.82294 0.76030 0.89447 1.90697 1.74199 1.53839 1.24992 1.23388 0.98956 1.05220 1.00136 1.85511 1.05711 1.86628 1.13659 1.23185 1.00873 1.52168 0.93181 0.90153 1.26053 0.97075 0.94358 1.01368 1.70171 1.11913 1.44528 1.27987 0.85016 0.77093 0.78987 0.77293 1.19303 1.20409 1.18324 0.88305 0.88153 0.88481 0.74156 0.82930 0.76418 0.89824 0.89639 0.89229 0.92441 0.89936 0.92242 0.90353 0.87961 0.87650 0.87780 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 9.89 71.24 0.70 -0.60 16 2 C 0.07 1.69 7.37 25.26 0.19 1.87 16 3 O -0.18 -3.90 10.52 4.48 0.05 -3.85 16 4 C -0.03 -0.55 12.03 66.89 0.80 0.25 16 5 C -0.21 -5.12 10.60 23.65 0.25 -4.86 16 6 C -0.28 -7.20 6.31 -18.99 -0.12 -7.32 16 7 C 0.59 16.13 7.81 86.65 0.68 16.81 16 8 O -0.57 -16.97 14.85 -4.07 -0.06 -17.03 16 9 N -0.72 -17.68 5.38 -466.43 -2.51 -20.20 16 10 C 0.12 2.31 4.97 86.38 0.43 2.74 16 11 C 0.12 2.58 2.80 44.99 0.13 2.71 16 12 H 0.09 2.24 6.90 -2.39 -0.02 2.23 16 13 C -0.15 -2.16 9.17 71.98 0.66 -1.50 16 14 N -0.60 -14.43 2.24 -822.58 -1.85 -16.28 16 15 C 0.07 1.19 9.40 127.77 1.20 2.40 16 16 C 0.53 18.44 7.40 87.66 0.65 19.09 16 17 O -0.56 -24.00 15.19 -3.05 -0.05 -24.04 16 18 C -0.13 -4.78 4.71 71.23 0.34 -4.44 16 19 S -0.14 -7.59 20.57 -56.49 -1.16 -8.76 16 20 C -0.55 -30.36 9.50 67.95 0.65 -29.71 16 21 H 0.08 4.16 7.80 -2.91 -0.02 4.14 16 22 C 0.02 0.92 5.49 84.86 0.47 1.38 16 23 N -0.91 -54.64 13.22 21.65 0.29 -54.35 16 24 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 28 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.88 6.49 -2.39 -0.02 1.87 16 31 H 0.24 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.15 3.91 7.74 -2.91 -0.02 3.89 16 33 H 0.40 10.85 7.04 -92.71 -0.65 10.19 16 34 H 0.08 1.48 7.84 -2.39 -0.02 1.46 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 0.87 6.66 -2.38 -0.02 0.85 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.36 6.44 -2.39 -0.02 1.35 16 41 H 0.10 1.16 6.43 -2.38 -0.02 1.14 16 42 H 0.11 3.66 7.40 -2.39 -0.02 3.64 16 43 H 0.10 3.62 8.11 -2.39 -0.02 3.60 16 44 H 0.27 15.13 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -77.35 384.38 4.13 -73.22 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.38 Total: 27.77 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 7.02 Total: -1.20 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -4.07 Total: -90.82 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -0.06 Total: -44.92 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -1.16 Total: -8.76 kcal Total: -77.35 4.13 -73.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508728689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.495 kcal (2) G-P(sol) polarization free energy of solvation -77.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds