Wall clock time and date at job start Sat Apr 11 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33648 * 125.80548 * 2 1 4 4 C 1.34214 * 110.91281 * 179.73475 * 3 2 1 5 5 C 1.34177 * 109.12202 * 0.45134 * 4 3 2 6 6 C 1.36414 * 125.79801 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19599 * 359.97438 * 6 2 1 8 8 O 1.21616 * 119.99610 * 359.97044 * 7 6 2 9 9 N 1.34783 * 120.00408 * 179.97438 * 7 6 2 10 10 C 1.46491 * 119.99950 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47583 * 34.99186 * 10 9 7 12 12 C 1.53006 * 109.47070 * 274.99370 * 10 9 7 13 13 C 1.53005 * 109.47179 * 155.00036 * 10 9 7 14 14 N 1.46511 * 109.46554 * 304.99596 * 13 10 9 15 15 C 1.46494 * 119.99790 * 269.99870 * 14 13 10 16 16 C 1.34774 * 119.99756 * 90.00058 * 14 13 10 17 17 O 1.21279 * 120.00051 * 0.02562 * 16 14 13 18 18 C 1.50702 * 119.99384 * 179.97438 * 16 14 13 19 19 S 1.81009 * 109.46830 * 180.02562 * 18 16 14 20 20 C 1.76197 * 99.99697 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00403 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99663 * 179.97438 * 20 19 18 23 23 N 1.31638 * 120.00169 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00122 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46909 * 59.99858 * 24 22 20 26 26 H 1.48502 * 109.47050 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47084 * 300.00078 * 24 22 20 28 28 H 1.09001 * 109.46861 * 269.99620 * 1 2 3 29 29 H 1.08999 * 109.47154 * 29.99168 * 1 2 3 30 30 H 1.08995 * 109.47634 * 149.99949 * 1 2 3 31 31 H 1.08002 * 125.43915 * 180.28813 * 4 3 2 32 32 H 1.08002 * 127.02647 * 179.84063 * 5 4 3 33 33 H 0.97001 * 119.99484 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.46997 * 59.99991 * 12 10 9 35 35 H 1.08993 * 109.47392 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.47193 * 300.00446 * 12 10 9 37 37 H 1.08993 * 109.47302 * 64.98971 * 13 10 9 38 38 H 1.09000 * 109.47209 * 184.99902 * 13 10 9 39 39 H 1.09005 * 109.47604 * 90.00036 * 15 14 13 40 40 H 1.09001 * 109.47547 * 210.00031 * 15 14 13 41 41 H 1.09009 * 109.47348 * 330.00337 * 15 14 13 42 42 H 1.09001 * 109.47196 * 299.99868 * 18 16 14 43 43 H 1.08994 * 109.47243 * 60.00424 * 18 16 14 44 44 H 0.96996 * 119.99786 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 0.0058 5 6 3.6849 -0.5991 -0.0002 6 6 2.3049 -1.1064 -0.0005 7 6 1.8739 -2.5157 -0.0006 8 8 0.6889 -2.7891 0.0003 9 7 2.7929 -3.5016 -0.0016 10 6 2.3644 -4.9025 -0.0023 11 1 1.4528 -5.0033 -0.5912 12 6 2.0958 -5.3543 1.4346 13 6 3.4651 -5.7723 -0.6130 14 7 3.8058 -5.2650 -1.9446 15 6 3.0950 -5.7663 -3.1233 16 6 4.7733 -4.3372 -2.0849 17 8 5.3621 -3.9226 -1.1090 18 6 5.1241 -3.8159 -3.4547 19 16 6.4502 -2.5921 -3.3129 20 6 6.6529 -2.1628 -5.0097 21 1 6.0385 -2.6334 -5.7630 22 6 7.6022 -1.2196 -5.3783 23 7 8.3508 -0.6456 -4.4602 24 14 7.8177 -0.7649 -7.1773 25 1 6.5429 -0.2160 -7.7052 26 1 8.8877 0.2569 -7.3049 27 1 8.1942 -1.9746 -7.9520 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 4.4172 1.4284 0.0115 32 1 4.5928 -1.1841 -0.0002 33 1 3.7381 -3.2835 -0.0027 34 1 1.3117 -4.7347 1.8697 35 1 1.7773 -6.3967 1.4342 36 1 3.0073 -5.2535 2.0236 37 1 4.3485 -5.7412 0.0246 38 1 3.1122 -6.8003 -0.6952 39 1 2.2190 -5.1452 -3.3109 40 1 3.7568 -5.7317 -3.9887 41 1 2.7801 -6.7950 -2.9476 42 1 5.4579 -4.6416 -4.0832 43 1 4.2460 -3.3504 -3.9022 44 1 9.0139 0.0138 -4.7178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001510456230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:47 Heat of formation + Delta-G solvation = -61.552926 kcal Electronic energy + Delta-G solvation = -27969.215374 eV Core-core repulsion = 24014.670662 eV Total energy + Delta-G solvation = -3954.544712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.39561 -40.10691 -38.92873 -36.19503 -34.64936 -32.97630 -32.46613 -31.88569 -30.97088 -29.50057 -27.31771 -26.81216 -25.71304 -25.25166 -23.59855 -21.68837 -20.43460 -19.86150 -19.23961 -17.88884 -17.64375 -16.72757 -16.37835 -16.19565 -15.92588 -15.72037 -15.07259 -14.83774 -14.58943 -14.30292 -14.04999 -13.61575 -13.33704 -13.25748 -13.13913 -12.96497 -12.89147 -12.77871 -12.63892 -12.55733 -12.39355 -12.25593 -11.89855 -11.77709 -11.64685 -11.21866 -11.08273 -11.06920 -10.80057 -9.85900 -9.83226 -9.63770 -9.51298 -9.09468 -9.01886 -8.60444 -8.40198 -8.30206 -6.54383 -6.25961 -3.96242 1.48096 2.28321 2.81410 2.90795 2.93854 3.20730 3.22591 3.26015 3.39104 3.52939 3.56990 4.16665 4.65923 4.68044 4.74125 4.96180 5.00428 5.03794 5.09684 5.11898 5.19588 5.27806 5.32679 5.40245 5.47553 5.51441 5.54233 5.64651 5.67695 5.74125 5.77433 5.84258 5.88102 6.02087 6.08005 6.09309 6.21698 6.44260 6.52600 6.68018 7.16840 7.40092 7.55710 7.73909 8.30974 8.35954 8.45296 9.19980 10.81334 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009677 B = 0.004091 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.716130 B = 6842.785595 C = 8811.434107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.069 3.931 3 O -0.178 6.178 4 C -0.039 4.039 5 C -0.174 4.174 6 C -0.247 4.247 7 C 0.594 3.406 8 O -0.556 6.556 9 N -0.713 5.713 10 C 0.127 3.873 11 H 0.087 0.913 12 C -0.161 4.161 13 C 0.106 3.894 14 N -0.621 5.621 15 C 0.079 3.921 16 C 0.541 3.459 17 O -0.524 6.524 18 C -0.152 4.152 19 S -0.056 6.056 20 C -0.536 4.536 21 H 0.071 0.929 22 C 0.076 3.924 23 N -0.868 5.868 24 Si 0.916 3.084 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.210 0.790 32 H 0.163 0.837 33 H 0.414 0.586 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.768 -6.647 9.068 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.016 3.984 3 O -0.075 6.075 4 C -0.104 4.104 5 C -0.193 4.193 6 C -0.252 4.252 7 C 0.383 3.617 8 O -0.437 6.437 9 N -0.369 5.369 10 C 0.021 3.979 11 H 0.105 0.895 12 C -0.220 4.220 13 C -0.018 4.018 14 N -0.356 5.356 15 C -0.064 4.064 16 C 0.330 3.670 17 O -0.399 6.399 18 C -0.303 4.303 19 S 0.170 5.830 20 C -0.684 4.684 21 H 0.089 0.911 22 C -0.134 4.134 23 N -0.503 5.503 24 Si 0.743 3.257 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.227 0.773 32 H 0.180 0.820 33 H 0.254 0.746 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.638 -5.838 10.527 18.190 hybrid contribution 0.207 -0.280 -2.469 2.493 sum -13.430 -6.117 8.058 16.814 Atomic orbital electron populations 1.20539 0.84108 1.04822 1.03961 1.22709 0.93946 0.83367 0.98426 1.83740 1.17400 1.34834 1.71484 1.23904 0.83062 0.96665 1.06780 1.23039 0.96799 0.94693 1.04793 1.21133 0.93667 0.93653 1.16706 1.17221 0.85272 0.83999 0.75212 1.90690 1.16713 1.84325 1.51995 1.46133 1.11248 1.05085 1.74458 1.21380 0.98454 0.81154 0.96937 0.89467 1.22125 1.02438 1.01415 0.95995 1.21827 0.98679 0.96937 0.84322 1.47838 1.38027 1.42560 1.07166 1.21811 0.97257 0.99200 0.88134 1.20341 0.77711 0.77621 0.91366 1.90578 1.51380 1.57438 1.40530 1.23570 1.06049 1.04733 0.95915 1.85233 1.40004 1.46124 1.11621 1.22811 1.24698 1.28458 0.92430 0.91075 1.24957 0.94730 0.95068 0.98597 1.69996 1.21083 1.26110 1.33105 0.86257 0.78056 0.78345 0.83073 1.19930 1.20774 1.19927 0.89732 0.90620 0.87564 0.77349 0.81954 0.74560 0.91744 0.91589 0.92149 0.89122 0.89106 0.92694 0.90537 0.91159 0.89245 0.89331 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.89 36.01 0.36 -0.53 16 2 C 0.07 1.01 7.37 -34.97 -0.26 0.75 16 3 O -0.18 -2.59 10.52 7.67 0.08 -2.51 16 4 C -0.04 -0.55 12.03 29.30 0.35 -0.19 16 5 C -0.17 -2.75 10.60 -37.45 -0.40 -3.15 16 6 C -0.25 -3.98 6.31 -103.27 -0.65 -4.64 16 7 C 0.59 9.67 7.78 -12.54 -0.10 9.57 16 8 O -0.56 -9.58 14.51 5.26 0.08 -9.50 16 9 N -0.71 -10.55 4.48 -54.90 -0.25 -10.79 16 10 C 0.13 1.51 2.88 -67.93 -0.20 1.31 16 11 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 12 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 13 C 0.11 1.15 5.19 -4.03 -0.02 1.13 16 14 N -0.62 -8.15 2.77 -181.56 -0.50 -8.65 16 15 C 0.08 0.80 10.28 59.84 0.62 1.42 16 16 C 0.54 9.45 6.99 -10.99 -0.08 9.37 16 17 O -0.52 -10.35 13.18 5.56 0.07 -10.27 16 18 C -0.15 -2.98 4.71 36.01 0.17 -2.81 16 19 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 20 C -0.54 -14.88 9.50 30.94 0.29 -14.58 16 21 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 22 C 0.08 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -25.41 13.22 55.49 0.73 -24.67 16 24 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.11 1.33 6.48 -51.93 -0.34 0.99 16 31 H 0.21 2.26 8.06 -52.49 -0.42 1.84 16 32 H 0.16 2.66 7.74 -52.49 -0.41 2.26 16 33 H 0.41 6.65 4.99 -40.82 -0.20 6.44 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.08 7.42 -51.93 -0.39 0.70 16 38 H 0.09 0.69 7.89 -51.93 -0.41 0.28 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 41 H 0.07 0.51 7.89 -51.92 -0.41 0.10 16 42 H 0.09 1.63 7.40 -51.92 -0.38 1.25 16 43 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -34.09 383.61 -7.08 -41.17 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.19 Total: 8.66 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 0.35 Total: -1.59 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.02 Total: -44.11 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: 0.23 Total: -22.28 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.09 -7.08 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510456230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.386 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds