Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33648 * 125.80548 * 2 1 4 4 C 1.34214 * 110.91281 * 179.73475 * 3 2 1 5 5 C 1.34177 * 109.12202 * 0.45134 * 4 3 2 6 6 C 1.36414 * 125.79801 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19599 * 359.97438 * 6 2 1 8 8 O 1.21616 * 119.99610 * 359.97044 * 7 6 2 9 9 N 1.34783 * 120.00408 * 179.97438 * 7 6 2 10 10 C 1.46491 * 119.99950 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47583 * 34.99186 * 10 9 7 12 12 C 1.53006 * 109.47070 * 274.99370 * 10 9 7 13 13 C 1.53005 * 109.47179 * 155.00036 * 10 9 7 14 14 N 1.46511 * 109.46554 * 304.99596 * 13 10 9 15 15 C 1.46494 * 119.99790 * 269.99870 * 14 13 10 16 16 C 1.34774 * 119.99756 * 90.00058 * 14 13 10 17 17 O 1.21279 * 120.00051 * 0.02562 * 16 14 13 18 18 C 1.50702 * 119.99384 * 179.97438 * 16 14 13 19 19 S 1.81009 * 109.46830 * 180.02562 * 18 16 14 20 20 C 1.76197 * 99.99697 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00403 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99663 * 179.97438 * 20 19 18 23 23 N 1.31638 * 120.00169 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00122 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46909 * 59.99858 * 24 22 20 26 26 H 1.48502 * 109.47050 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47084 * 300.00078 * 24 22 20 28 28 H 1.09001 * 109.46861 * 269.99620 * 1 2 3 29 29 H 1.08999 * 109.47154 * 29.99168 * 1 2 3 30 30 H 1.08995 * 109.47634 * 149.99949 * 1 2 3 31 31 H 1.08002 * 125.43915 * 180.28813 * 4 3 2 32 32 H 1.08002 * 127.02647 * 179.84063 * 5 4 3 33 33 H 0.97001 * 119.99484 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.46997 * 59.99991 * 12 10 9 35 35 H 1.08993 * 109.47392 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.47193 * 300.00446 * 12 10 9 37 37 H 1.08993 * 109.47302 * 64.98971 * 13 10 9 38 38 H 1.09000 * 109.47209 * 184.99902 * 13 10 9 39 39 H 1.09005 * 109.47604 * 90.00036 * 15 14 13 40 40 H 1.09001 * 109.47547 * 210.00031 * 15 14 13 41 41 H 1.09009 * 109.47348 * 330.00337 * 15 14 13 42 42 H 1.09001 * 109.47196 * 299.99868 * 18 16 14 43 43 H 1.08994 * 109.47243 * 60.00424 * 18 16 14 44 44 H 0.96996 * 119.99786 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 0.0058 5 6 3.6849 -0.5991 -0.0002 6 6 2.3049 -1.1064 -0.0005 7 6 1.8739 -2.5157 -0.0006 8 8 0.6889 -2.7891 0.0003 9 7 2.7929 -3.5016 -0.0016 10 6 2.3644 -4.9025 -0.0023 11 1 1.4528 -5.0033 -0.5912 12 6 2.0958 -5.3543 1.4346 13 6 3.4651 -5.7723 -0.6130 14 7 3.8058 -5.2650 -1.9446 15 6 3.0950 -5.7663 -3.1233 16 6 4.7733 -4.3372 -2.0849 17 8 5.3621 -3.9226 -1.1090 18 6 5.1241 -3.8159 -3.4547 19 16 6.4502 -2.5921 -3.3129 20 6 6.6529 -2.1628 -5.0097 21 1 6.0385 -2.6334 -5.7630 22 6 7.6022 -1.2196 -5.3783 23 7 8.3508 -0.6456 -4.4602 24 14 7.8177 -0.7649 -7.1773 25 1 6.5429 -0.2160 -7.7052 26 1 8.8877 0.2569 -7.3049 27 1 8.1942 -1.9746 -7.9520 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 4.4172 1.4284 0.0115 32 1 4.5928 -1.1841 -0.0002 33 1 3.7381 -3.2835 -0.0027 34 1 1.3117 -4.7347 1.8697 35 1 1.7773 -6.3967 1.4342 36 1 3.0073 -5.2535 2.0236 37 1 4.3485 -5.7412 0.0246 38 1 3.1122 -6.8003 -0.6952 39 1 2.2190 -5.1452 -3.3109 40 1 3.7568 -5.7317 -3.9887 41 1 2.7801 -6.7950 -2.9476 42 1 5.4579 -4.6416 -4.0832 43 1 4.2460 -3.3504 -3.9022 44 1 9.0139 0.0138 -4.7178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001510456230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -83.725028 kcal Electronic energy + Delta-G solvation = -27970.176828 eV Core-core repulsion = 24014.670662 eV Total energy + Delta-G solvation = -3955.506166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.55144 -41.30537 -40.18746 -37.36182 -35.78854 -34.57707 -34.14300 -32.93230 -32.11108 -30.86141 -28.26341 -27.86614 -27.67968 -26.44820 -24.73672 -22.80203 -21.55895 -21.03686 -20.54873 -19.54699 -18.96057 -18.03509 -17.51919 -17.35038 -17.10354 -16.94123 -16.86915 -16.32033 -15.89045 -15.72169 -15.39228 -14.75769 -14.55441 -14.52203 -14.44267 -14.16697 -13.85704 -13.84082 -13.79696 -13.57370 -13.52773 -13.32197 -13.15737 -12.96216 -12.87721 -12.71193 -12.68922 -12.60309 -12.15117 -11.73044 -11.12953 -11.05834 -10.90544 -10.86239 -10.27513 -10.15912 -9.70043 -9.53674 -8.62920 -8.34549 -6.10375 0.31018 1.08739 1.25702 1.41913 1.44511 1.51380 1.55194 1.82609 2.07956 2.26967 2.30250 2.34873 2.99637 3.26658 3.58274 3.69672 3.72564 3.86146 3.88705 4.12299 4.17745 4.22882 4.33354 4.37044 4.45936 4.49618 4.61496 4.62084 4.63986 4.70525 4.74130 4.79742 4.87986 4.91197 5.00822 5.19716 5.25038 5.31428 5.41616 5.44551 5.61733 6.00489 6.19003 6.22278 6.50953 7.07427 7.08986 7.19586 8.73861 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009677 B = 0.004091 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.716130 B = 6842.785595 C = 8811.434107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.069 3.931 3 O -0.178 6.178 4 C -0.032 4.032 5 C -0.199 4.199 6 C -0.276 4.276 7 C 0.588 3.412 8 O -0.571 6.571 9 N -0.715 5.715 10 C 0.123 3.877 11 H 0.084 0.916 12 C -0.153 4.153 13 C 0.107 3.893 14 N -0.610 5.610 15 C 0.071 3.929 16 C 0.537 3.463 17 O -0.554 6.554 18 C -0.130 4.130 19 S -0.127 6.127 20 C -0.551 4.551 21 H 0.076 0.924 22 C 0.020 3.980 23 N -0.907 5.907 24 Si 0.990 3.010 25 H -0.266 1.266 26 H -0.277 1.277 27 H -0.263 1.263 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.238 0.762 32 H 0.148 0.852 33 H 0.407 0.593 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.137 0.863 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.324 -7.912 8.132 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.016 3.984 3 O -0.074 6.074 4 C -0.097 4.097 5 C -0.218 4.218 6 C -0.280 4.280 7 C 0.377 3.623 8 O -0.454 6.454 9 N -0.369 5.369 10 C 0.018 3.982 11 H 0.102 0.898 12 C -0.211 4.211 13 C -0.015 4.015 14 N -0.343 5.343 15 C -0.071 4.071 16 C 0.325 3.675 17 O -0.433 6.433 18 C -0.281 4.281 19 S 0.100 5.900 20 C -0.699 4.699 21 H 0.095 0.905 22 C -0.185 4.185 23 N -0.543 5.543 24 Si 0.812 3.188 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.188 1.188 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.255 0.745 32 H 0.165 0.835 33 H 0.246 0.754 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.155 0.845 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.111 0.889 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.229 -7.154 9.591 19.367 hybrid contribution 0.613 0.030 -2.125 2.212 sum -14.615 -7.125 7.466 17.892 Atomic orbital electron populations 1.20638 0.81832 1.05356 1.05226 1.23301 0.95252 0.82908 0.96976 1.83765 1.17482 1.34790 1.71317 1.24423 0.83607 0.96567 1.05071 1.23014 0.96509 0.95600 1.06722 1.21362 0.94066 0.94340 1.18241 1.17329 0.85308 0.84392 0.75241 1.90662 1.17048 1.84603 1.53098 1.46284 1.10615 1.06239 1.73744 1.21612 0.98528 0.79776 0.98305 0.89766 1.22061 1.01833 1.02933 0.94319 1.22065 0.98007 0.98787 0.82683 1.47828 1.36434 1.40774 1.09218 1.22086 0.96792 1.01373 0.86839 1.20000 0.78929 0.78623 0.89906 1.90575 1.52983 1.58810 1.40893 1.23396 1.03467 1.03150 0.98084 1.85314 1.43531 1.49182 1.12001 1.23157 1.24976 1.28776 0.92969 0.90547 1.25986 0.94208 0.94807 1.03506 1.70145 1.21817 1.26804 1.35523 0.85128 0.78290 0.78367 0.77019 1.19032 1.20223 1.18753 0.87972 0.88268 0.88694 0.74549 0.83462 0.75353 0.93494 0.88334 0.92250 0.90155 0.84478 0.92645 0.90717 0.87184 0.87724 0.88900 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.62 9.89 71.24 0.70 -0.92 16 2 C 0.07 2.01 7.37 25.26 0.19 2.20 16 3 O -0.18 -5.09 10.52 4.52 0.05 -5.04 16 4 C -0.03 -0.90 12.03 66.89 0.80 -0.10 16 5 C -0.20 -6.62 10.60 23.65 0.25 -6.37 16 6 C -0.28 -9.15 6.31 -18.99 -0.12 -9.27 16 7 C 0.59 19.53 7.78 86.65 0.67 20.21 16 8 O -0.57 -19.76 14.51 -4.08 -0.06 -19.82 16 9 N -0.71 -21.41 4.48 -445.84 -2.00 -23.40 16 10 C 0.12 2.75 2.88 45.00 0.13 2.88 16 11 H 0.08 1.97 7.58 -2.39 -0.02 1.95 16 12 C -0.15 -2.79 9.48 71.98 0.68 -2.11 16 13 C 0.11 2.08 5.19 86.38 0.45 2.52 16 14 N -0.61 -14.89 2.77 -846.73 -2.35 -17.24 16 15 C 0.07 1.23 10.28 127.77 1.31 2.55 16 16 C 0.54 18.73 6.99 87.66 0.61 19.34 16 17 O -0.55 -22.53 13.18 -3.03 -0.04 -22.57 16 18 C -0.13 -5.09 4.71 71.24 0.34 -4.76 16 19 S -0.13 -6.78 20.57 -56.49 -1.16 -7.95 16 20 C -0.55 -30.96 9.50 67.95 0.65 -30.32 16 21 H 0.08 4.05 7.80 -2.91 -0.02 4.02 16 22 C 0.02 1.13 5.49 84.86 0.47 1.60 16 23 N -0.91 -54.17 13.22 21.65 0.29 -53.88 16 24 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 26 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 2.33 6.48 -2.39 -0.02 2.31 16 31 H 0.24 5.06 8.06 -2.91 -0.02 5.04 16 32 H 0.15 5.28 7.74 -2.91 -0.02 5.26 16 33 H 0.41 13.60 4.99 -92.71 -0.46 13.14 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.80 7.42 -2.39 -0.02 1.78 16 38 H 0.14 1.44 7.89 -2.39 -0.02 1.42 16 39 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.07 1.35 6.44 -2.39 -0.02 1.33 16 41 H 0.11 1.08 7.89 -2.38 -0.02 1.07 16 42 H 0.10 3.74 7.40 -2.40 -0.02 3.73 16 43 H 0.09 3.53 8.11 -2.40 -0.02 3.51 16 44 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -76.79 383.61 4.45 -72.35 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.56 Total: 35.03 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 7.13 Total: -2.55 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -4.06 Total: -94.53 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -0.05 Total: -47.43 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -6.78 SS G_CDS: -1.16 Total: -7.95 kcal Total: -76.79 4.45 -72.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510456230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.379 kcal (2) G-P(sol) polarization free energy of solvation -76.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds