Wall clock time and date at job start Sat Apr 11 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34183 * 127.02395 * 2 1 4 4 O 1.34222 * 109.12433 * 179.97438 * 3 2 1 5 5 C 1.33652 * 110.90696 * 359.76059 * 4 3 2 6 6 C 1.36418 * 108.39600 * 0.38939 * 5 4 3 7 7 C 1.47387 * 127.19001 * 179.89682 * 6 5 4 8 8 O 1.21609 * 119.99842 * 215.15943 * 7 6 5 9 9 N 1.34775 * 119.99974 * 35.15361 * 7 6 5 10 10 C 1.46499 * 120.00154 * 356.15568 * 9 7 6 11 11 C 1.46497 * 119.99892 * 176.14880 * 9 7 6 12 12 C 1.52995 * 109.47198 * 90.00428 * 11 9 7 13 13 H 1.09001 * 109.47338 * 65.00298 * 12 11 9 14 14 C 1.52998 * 109.46977 * 184.99966 * 12 11 9 15 15 N 1.46502 * 109.46964 * 305.00072 * 12 11 9 16 16 C 1.34776 * 119.99767 * 155.00064 * 15 12 11 17 17 O 1.21273 * 120.00472 * 0.02562 * 16 15 12 18 18 C 1.50707 * 119.99649 * 179.97438 * 16 15 12 19 19 S 1.80999 * 109.47007 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99987 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99969 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99978 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99986 * 180.02562 * 22 20 19 24 24 Si 1.86808 * 119.99894 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.46712 * 89.99992 * 24 22 20 26 26 H 1.48498 * 109.46748 * 209.99611 * 24 22 20 27 27 H 1.48490 * 109.47215 * 330.00112 * 24 22 20 28 28 H 1.08992 * 109.47155 * 270.03485 * 1 2 3 29 29 H 1.09001 * 109.46438 * 30.02901 * 1 2 3 30 30 H 1.09002 * 109.46714 * 150.02371 * 1 2 3 31 31 H 1.08000 * 125.43793 * 359.97079 * 3 2 1 32 32 H 1.07996 * 125.80404 * 180.26405 * 5 4 3 33 33 H 1.09000 * 109.47055 * 275.36032 * 10 9 7 34 34 H 1.09004 * 109.47496 * 35.35865 * 10 9 7 35 35 H 1.08996 * 109.47328 * 155.36296 * 10 9 7 36 36 H 1.08999 * 109.47142 * 329.99926 * 11 9 7 37 37 H 1.09000 * 109.47371 * 210.00716 * 11 9 7 38 38 H 1.08998 * 109.47435 * 60.00422 * 14 12 11 39 39 H 1.09004 * 109.46960 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47300 * 299.99712 * 14 12 11 41 41 H 0.97002 * 119.99762 * 334.99908 * 15 12 11 42 42 H 1.08998 * 109.47417 * 299.99831 * 18 16 15 43 43 H 1.09004 * 109.46993 * 60.00044 * 18 16 15 44 44 H 0.96996 * 119.99692 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6624 -0.6759 0.0062 6 6 2.3923 -1.1738 0.0007 7 6 1.9913 -2.5920 0.0017 8 8 1.0005 -2.9442 -0.6092 9 7 2.7228 -3.4986 0.6796 10 6 3.9622 -3.0899 1.3453 11 6 2.2785 -4.8928 0.7508 12 6 2.8666 -5.6762 -0.4244 13 1 3.9518 -5.7142 -0.3290 14 6 2.3042 -7.0991 -0.4212 15 7 2.5097 -5.0128 -1.6809 16 6 3.2797 -5.1812 -2.7741 17 8 4.2677 -5.8821 -2.7179 18 6 2.9122 -4.4992 -4.0669 19 16 4.1315 -4.9175 -5.3375 20 6 3.4760 -4.0130 -6.7001 21 1 2.5742 -3.4313 -6.5784 22 6 4.1192 -4.0472 -7.9296 23 7 3.6298 -3.3711 -8.9475 24 14 5.6794 -5.0528 -8.1399 25 1 5.3263 -6.4310 -8.5656 26 1 6.5400 -4.4211 -9.1720 27 1 6.4118 -5.1058 -6.8493 28 1 -0.3633 0.0006 1.0276 29 1 -0.3632 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.9895 2.1011 -0.0004 32 1 4.5702 -1.2609 0.0118 33 1 4.7832 -3.1098 0.6286 34 1 3.8475 -2.0797 1.7383 35 1 4.1781 -3.7760 2.1642 36 1 1.1901 -4.9301 0.7041 37 1 2.6172 -5.3347 1.6879 38 1 1.2191 -7.0611 -0.5166 39 1 2.7229 -7.6571 -1.2587 40 1 2.5698 -7.5926 0.5136 41 1 1.7192 -4.4524 -1.7260 42 1 1.9250 -4.8333 -4.3861 43 1 2.8996 -3.4195 -3.9173 44 1 4.0791 -3.3953 -9.8067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001510710790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:50 Heat of formation + Delta-G solvation = -54.819674 kcal Electronic energy + Delta-G solvation = -27677.371458 eV Core-core repulsion = 23723.118722 eV Total energy + Delta-G solvation = -3954.252736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.84397 -40.32705 -38.95661 -36.43309 -34.89392 -34.03287 -32.38996 -31.72188 -30.76159 -28.60202 -27.80182 -27.42819 -26.55630 -25.55988 -23.24442 -21.80464 -20.84799 -20.18434 -19.62324 -17.93000 -17.71631 -16.88910 -16.56597 -16.49564 -16.14211 -16.09113 -15.03660 -14.92665 -14.86495 -14.70035 -14.11150 -13.81900 -13.73851 -13.34713 -13.33286 -13.24343 -13.09272 -12.92717 -12.80440 -12.74657 -12.57117 -12.26430 -12.02094 -11.83675 -11.75348 -11.23973 -11.21837 -10.97254 -10.53516 -10.26653 -9.81552 -9.73365 -9.41302 -9.09817 -8.95881 -8.92067 -8.77543 -8.44190 -6.85780 -6.23939 -3.94915 1.15661 1.77979 2.50948 2.73504 2.82268 2.89980 3.09203 3.35468 3.41568 3.53272 3.77145 4.17650 4.29246 4.37222 4.55682 4.61328 4.66199 4.80680 4.88303 4.97749 5.03517 5.10434 5.14983 5.17515 5.19370 5.26977 5.41300 5.44471 5.44753 5.59165 5.63987 5.68341 5.77121 5.87464 5.93605 6.02318 6.14749 6.18837 6.22044 6.71134 6.74743 6.97855 7.76461 7.94079 7.99611 8.48221 8.64229 9.22255 10.85524 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003485 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.945431 B = 8032.800050 C = 9619.297090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.135 4.135 3 C -0.043 4.043 4 O -0.171 6.171 5 C 0.020 3.980 6 C -0.232 4.232 7 C 0.596 3.404 8 O -0.530 6.530 9 N -0.609 5.609 10 C 0.067 3.933 11 C 0.109 3.891 12 C 0.127 3.873 13 H 0.087 0.913 14 C -0.162 4.162 15 N -0.729 5.729 16 C 0.531 3.469 17 O -0.527 6.527 18 C -0.122 4.122 19 S -0.143 6.143 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.236 1.236 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.207 0.793 32 H 0.213 0.787 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.409 0.591 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 4.932 27.576 28.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C -0.109 4.109 4 O -0.066 6.066 5 C -0.050 4.050 6 C -0.237 4.237 7 C 0.385 3.615 8 O -0.408 6.408 9 N -0.342 5.342 10 C -0.076 4.076 11 C -0.014 4.014 12 C 0.020 3.980 13 H 0.105 0.895 14 C -0.221 4.221 15 N -0.388 5.388 16 C 0.317 3.683 17 O -0.402 6.402 18 C -0.272 4.272 19 S 0.084 5.916 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.160 1.160 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.224 0.776 32 H 0.230 0.770 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.249 0.751 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.000 3.851 27.178 27.522 hybrid contribution -0.900 0.629 -0.520 1.215 sum -2.900 4.480 26.657 27.186 Atomic orbital electron populations 1.20255 0.88408 1.03849 1.02164 1.21365 0.97149 0.90247 1.04942 1.23742 0.79703 0.99750 1.07728 1.83813 1.29615 1.22332 1.70823 1.24732 0.98915 0.81014 1.00335 1.21244 0.93630 0.93964 1.14834 1.17304 0.82297 0.83893 0.77965 1.90680 1.27043 1.80321 1.42731 1.47638 1.24714 1.08941 1.52912 1.22130 0.85851 1.01948 0.97674 1.21937 1.01405 0.79774 0.98296 1.21300 1.00869 0.92080 0.83718 0.89469 1.22133 1.01448 0.95832 1.02696 1.46359 1.30682 1.52227 1.09555 1.20256 0.82657 0.80684 0.84703 1.90661 1.26613 1.38478 1.84473 1.23259 1.04863 1.03465 0.95651 1.84667 1.34876 1.66888 1.05200 1.22342 1.15140 1.34029 0.95220 0.89430 1.24709 0.97373 0.94625 0.94568 1.69946 1.39856 1.40378 1.01648 0.86733 0.83717 0.80858 0.80523 1.19226 1.19988 1.15968 0.91503 0.91289 0.89869 0.77603 0.77043 0.92045 0.90517 0.90232 0.89070 0.88778 0.92245 0.91313 0.91792 0.75135 0.88668 0.88847 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.32 36.01 0.37 -0.45 16 2 C -0.14 -1.40 6.37 -102.49 -0.65 -2.05 16 3 C -0.04 -0.37 11.96 29.30 0.35 -0.02 16 4 O -0.17 -1.65 10.52 7.63 0.08 -1.57 16 5 C 0.02 0.19 9.85 30.08 0.30 0.48 16 6 C -0.23 -2.58 5.61 -103.27 -0.58 -3.16 16 7 C 0.60 7.17 6.97 -12.54 -0.09 7.08 16 8 O -0.53 -7.77 13.12 5.27 0.07 -7.70 16 9 N -0.61 -5.62 2.77 -182.87 -0.51 -6.13 16 10 C 0.07 0.40 9.05 59.85 0.54 0.94 16 11 C 0.11 0.93 5.18 -4.05 -0.02 0.91 16 12 C 0.13 1.46 2.88 -67.93 -0.20 1.27 16 13 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 14 C -0.16 -1.70 9.48 37.16 0.35 -1.35 16 15 N -0.73 -10.95 4.48 -53.81 -0.24 -11.19 16 16 C 0.53 10.26 7.81 -10.98 -0.09 10.17 16 17 O -0.53 -11.64 15.52 5.56 0.09 -11.55 16 18 C -0.12 -2.62 6.16 36.01 0.22 -2.40 16 19 S -0.14 -3.77 18.55 -107.50 -1.99 -5.77 16 20 C -0.52 -15.56 10.04 30.94 0.31 -15.25 16 21 H 0.09 2.76 8.03 -52.49 -0.42 2.34 16 22 C 0.10 2.87 5.50 -17.43 -0.10 2.78 16 23 N -0.88 -27.27 13.97 55.49 0.78 -26.49 16 24 Si 0.86 22.29 27.74 -169.99 -4.72 17.57 16 25 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.24 -6.11 6.74 56.52 0.38 -5.73 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.94 7.09 -51.93 -0.37 0.57 16 31 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.21 1.39 6.11 -52.49 -0.32 1.07 16 33 H 0.06 0.38 7.31 -51.93 -0.38 0.00 16 34 H 0.08 0.40 5.88 -51.93 -0.31 0.09 16 35 H 0.08 0.31 7.83 -51.93 -0.41 -0.10 16 36 H 0.09 0.84 7.48 -51.93 -0.39 0.45 16 37 H 0.09 0.51 7.86 -51.93 -0.41 0.10 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.41 6.19 5.65 -40.82 -0.23 5.96 16 42 H 0.10 1.97 8.14 -51.92 -0.42 1.55 16 43 H 0.09 1.96 8.14 -51.91 -0.42 1.54 16 44 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -37.44 378.99 -6.17 -43.61 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.16 Total: 4.57 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 0.73 Total: -1.06 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.03 Total: -43.81 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.24 Total: -20.81 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.72 Total: 17.57 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -1.99 Total: -5.77 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.44 -6.17 -43.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510710790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.210 kcal (2) G-P(sol) polarization free energy of solvation -37.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds