Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34183 * 127.02395 * 2 1 4 4 O 1.34222 * 109.12433 * 179.97438 * 3 2 1 5 5 C 1.33652 * 110.90696 * 359.76059 * 4 3 2 6 6 C 1.36418 * 108.39600 * 0.38939 * 5 4 3 7 7 C 1.47387 * 127.19001 * 179.89682 * 6 5 4 8 8 O 1.21609 * 119.99842 * 215.15943 * 7 6 5 9 9 N 1.34775 * 119.99974 * 35.15361 * 7 6 5 10 10 C 1.46499 * 120.00154 * 356.15568 * 9 7 6 11 11 C 1.46497 * 119.99892 * 176.14880 * 9 7 6 12 12 C 1.52995 * 109.47198 * 90.00428 * 11 9 7 13 13 H 1.09001 * 109.47338 * 65.00298 * 12 11 9 14 14 C 1.52998 * 109.46977 * 184.99966 * 12 11 9 15 15 N 1.46502 * 109.46964 * 305.00072 * 12 11 9 16 16 C 1.34776 * 119.99767 * 155.00064 * 15 12 11 17 17 O 1.21273 * 120.00472 * 0.02562 * 16 15 12 18 18 C 1.50707 * 119.99649 * 179.97438 * 16 15 12 19 19 S 1.80999 * 109.47007 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99987 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99969 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99978 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99986 * 180.02562 * 22 20 19 24 24 Si 1.86808 * 119.99894 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.46712 * 89.99992 * 24 22 20 26 26 H 1.48498 * 109.46748 * 209.99611 * 24 22 20 27 27 H 1.48490 * 109.47215 * 330.00112 * 24 22 20 28 28 H 1.08992 * 109.47155 * 270.03485 * 1 2 3 29 29 H 1.09001 * 109.46438 * 30.02901 * 1 2 3 30 30 H 1.09002 * 109.46714 * 150.02371 * 1 2 3 31 31 H 1.08000 * 125.43793 * 359.97079 * 3 2 1 32 32 H 1.07996 * 125.80404 * 180.26405 * 5 4 3 33 33 H 1.09000 * 109.47055 * 275.36032 * 10 9 7 34 34 H 1.09004 * 109.47496 * 35.35865 * 10 9 7 35 35 H 1.08996 * 109.47328 * 155.36296 * 10 9 7 36 36 H 1.08999 * 109.47142 * 329.99926 * 11 9 7 37 37 H 1.09000 * 109.47371 * 210.00716 * 11 9 7 38 38 H 1.08998 * 109.47435 * 60.00422 * 14 12 11 39 39 H 1.09004 * 109.46960 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47300 * 299.99712 * 14 12 11 41 41 H 0.97002 * 119.99762 * 334.99908 * 15 12 11 42 42 H 1.08998 * 109.47417 * 299.99831 * 18 16 15 43 43 H 1.09004 * 109.46993 * 60.00044 * 18 16 15 44 44 H 0.96996 * 119.99692 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6624 -0.6759 0.0062 6 6 2.3923 -1.1738 0.0007 7 6 1.9913 -2.5920 0.0017 8 8 1.0005 -2.9442 -0.6092 9 7 2.7228 -3.4986 0.6796 10 6 3.9622 -3.0899 1.3453 11 6 2.2785 -4.8928 0.7508 12 6 2.8666 -5.6762 -0.4244 13 1 3.9518 -5.7142 -0.3290 14 6 2.3042 -7.0991 -0.4212 15 7 2.5097 -5.0128 -1.6809 16 6 3.2797 -5.1812 -2.7741 17 8 4.2677 -5.8821 -2.7179 18 6 2.9122 -4.4992 -4.0669 19 16 4.1315 -4.9175 -5.3375 20 6 3.4760 -4.0130 -6.7001 21 1 2.5742 -3.4313 -6.5784 22 6 4.1192 -4.0472 -7.9296 23 7 3.6298 -3.3711 -8.9475 24 14 5.6794 -5.0528 -8.1399 25 1 5.3263 -6.4310 -8.5656 26 1 6.5400 -4.4211 -9.1720 27 1 6.4118 -5.1058 -6.8493 28 1 -0.3633 0.0006 1.0276 29 1 -0.3632 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.9895 2.1011 -0.0004 32 1 4.5702 -1.2609 0.0118 33 1 4.7832 -3.1098 0.6286 34 1 3.8475 -2.0797 1.7383 35 1 4.1781 -3.7760 2.1642 36 1 1.1901 -4.9301 0.7041 37 1 2.6172 -5.3347 1.6879 38 1 1.2191 -7.0611 -0.5166 39 1 2.7229 -7.6571 -1.2587 40 1 2.5698 -7.5926 0.5136 41 1 1.7192 -4.4524 -1.7260 42 1 1.9250 -4.8333 -4.3861 43 1 2.8996 -3.4195 -3.9173 44 1 4.0791 -3.3953 -9.8067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001510710790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -81.052470 kcal Electronic energy + Delta-G solvation = -27678.508998 eV Core-core repulsion = 23723.118722 eV Total energy + Delta-G solvation = -3955.390276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.55678 -41.32026 -40.26631 -37.40528 -35.90415 -34.78531 -34.70835 -32.93770 -31.60842 -30.12627 -28.42863 -28.11683 -27.89216 -27.29896 -24.06012 -22.85034 -21.57831 -21.47064 -20.40405 -19.92030 -18.55771 -18.02909 -17.65786 -17.60213 -17.13010 -16.96292 -16.91887 -16.42943 -16.00343 -15.83017 -15.40871 -15.00310 -14.75213 -14.64862 -14.59046 -14.15829 -14.03325 -13.97802 -13.79984 -13.48658 -13.43714 -13.37757 -13.25954 -13.04596 -13.03390 -12.71327 -12.58459 -12.48842 -12.14756 -11.88405 -11.20040 -11.17540 -10.99351 -10.61500 -10.50854 -10.20010 -9.73610 -9.60904 -9.04345 -8.54394 -6.26627 0.40470 0.93932 1.05867 1.29791 1.43695 1.51564 1.53150 1.81367 1.98783 2.12487 2.22255 2.30547 2.68026 2.83373 3.49947 3.62797 3.72289 3.84778 3.93481 4.05551 4.13698 4.16671 4.30255 4.33555 4.36323 4.47085 4.48952 4.57705 4.69031 4.77104 4.77486 4.85297 4.91440 4.99968 5.02553 5.04650 5.23085 5.41070 5.47518 5.56777 5.67320 6.00320 6.07487 6.22217 6.43765 6.89560 7.02500 7.18140 8.58702 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003485 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.945431 B = 8032.800050 C = 9619.297090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.165 4.165 3 C -0.035 4.035 4 O -0.177 6.177 5 C 0.027 3.973 6 C -0.261 4.261 7 C 0.587 3.413 8 O -0.568 6.568 9 N -0.606 5.606 10 C 0.059 3.941 11 C 0.113 3.887 12 C 0.122 3.878 13 H 0.081 0.919 14 C -0.157 4.157 15 N -0.711 5.711 16 C 0.536 3.464 17 O -0.556 6.556 18 C -0.113 4.113 19 S -0.157 6.157 20 C -0.536 4.536 21 H 0.054 0.946 22 C 0.047 3.953 23 N -0.917 5.917 24 Si 0.918 3.082 25 H -0.260 1.260 26 H -0.255 1.255 27 H -0.235 1.235 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.241 0.759 32 H 0.235 0.765 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.138 0.862 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.099 0.901 41 H 0.410 0.590 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.134 4.699 30.020 30.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.167 4.167 3 C -0.100 4.100 4 O -0.072 6.072 5 C -0.043 4.043 6 C -0.265 4.265 7 C 0.377 3.623 8 O -0.449 6.449 9 N -0.337 5.337 10 C -0.082 4.082 11 C -0.009 4.009 12 C 0.017 3.983 13 H 0.099 0.901 14 C -0.216 4.216 15 N -0.369 5.369 16 C 0.321 3.679 17 O -0.435 6.435 18 C -0.264 4.264 19 S 0.070 5.930 20 C -0.684 4.684 21 H 0.073 0.927 22 C -0.159 4.159 23 N -0.555 5.555 24 Si 0.739 3.261 25 H -0.185 1.185 26 H -0.179 1.179 27 H -0.159 1.159 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.257 0.743 32 H 0.251 0.749 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.156 0.844 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.118 0.882 41 H 0.250 0.750 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.795 3.628 29.674 29.905 hybrid contribution -1.383 0.764 -1.164 1.963 sum -2.178 4.392 28.510 28.928 Atomic orbital electron populations 1.20206 0.88103 1.03168 1.02706 1.21665 0.97813 0.90795 1.06422 1.24367 0.78976 1.00819 1.05853 1.83835 1.30163 1.22476 1.70707 1.25134 0.99104 0.81008 0.99031 1.21420 0.94725 0.93947 1.16427 1.17591 0.82148 0.84696 0.77849 1.90648 1.28761 1.80938 1.44578 1.47763 1.25199 1.08758 1.51971 1.22379 0.84231 1.03333 0.98306 1.22031 1.01078 0.79248 0.98577 1.21642 1.00859 0.93053 0.82794 0.90074 1.22086 1.01430 0.94755 1.03280 1.46341 1.29545 1.51308 1.09707 1.19796 0.82812 0.80390 0.84867 1.90647 1.27994 1.39971 1.84874 1.23249 1.03507 1.04005 0.95650 1.84446 1.36778 1.66437 1.05386 1.22475 1.14428 1.34328 0.97168 0.92746 1.25611 1.00559 0.95582 0.94114 1.70026 1.41522 1.41551 1.02410 0.85825 0.79849 0.79529 0.80882 1.18498 1.17920 1.15888 0.90379 0.89764 0.92642 0.74290 0.74864 0.92030 0.89697 0.87349 0.89630 0.84382 0.91802 0.94401 0.88234 0.74970 0.88188 0.88602 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.56 10.32 71.24 0.74 -0.82 16 2 C -0.17 -3.34 6.37 -18.49 -0.12 -3.46 16 3 C -0.03 -0.55 11.96 66.89 0.80 0.25 16 4 O -0.18 -3.14 10.52 4.40 0.05 -3.09 16 5 C 0.03 0.47 9.85 67.39 0.66 1.13 16 6 C -0.26 -5.67 5.61 -18.99 -0.11 -5.78 16 7 C 0.59 13.86 6.97 86.65 0.60 14.46 16 8 O -0.57 -16.98 13.12 -4.06 -0.05 -17.03 16 9 N -0.61 -10.03 2.77 -850.73 -2.36 -12.39 16 10 C 0.06 0.54 9.05 127.77 1.16 1.70 16 11 C 0.11 1.63 5.18 86.38 0.45 2.08 16 12 C 0.12 2.59 2.88 44.99 0.13 2.71 16 13 H 0.08 1.89 7.58 -2.39 -0.02 1.87 16 14 C -0.16 -2.99 9.48 71.98 0.68 -2.31 16 15 N -0.71 -21.01 4.48 -442.54 -1.98 -22.99 16 16 C 0.54 20.69 7.81 87.66 0.68 21.37 16 17 O -0.56 -24.45 15.52 -3.01 -0.05 -24.50 16 18 C -0.11 -4.94 6.16 71.24 0.44 -4.50 16 19 S -0.16 -8.37 18.55 -56.49 -1.05 -9.42 16 20 C -0.54 -32.94 10.04 67.95 0.68 -32.26 16 21 H 0.05 3.58 8.03 -2.91 -0.02 3.56 16 22 C 0.05 2.84 5.50 84.86 0.47 3.30 16 23 N -0.92 -57.50 13.97 21.65 0.30 -57.20 16 24 Si 0.92 45.92 27.74 68.60 1.90 47.83 16 25 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.32 7.09 -2.39 -0.02 1.30 16 31 H 0.24 1.78 8.06 -2.91 -0.02 1.75 16 32 H 0.24 2.65 6.11 -2.91 -0.02 2.63 16 33 H 0.06 0.60 7.31 -2.39 -0.02 0.58 16 34 H 0.08 0.67 5.88 -2.38 -0.01 0.65 16 35 H 0.11 0.39 7.83 -2.39 -0.02 0.37 16 36 H 0.09 1.40 7.48 -2.39 -0.02 1.39 16 37 H 0.14 0.84 7.86 -2.39 -0.02 0.82 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.41 12.40 5.65 -92.71 -0.52 11.88 16 42 H 0.10 4.24 8.14 -2.40 -0.02 4.22 16 43 H 0.10 4.12 8.14 -2.39 -0.02 4.10 16 44 H 0.28 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -83.51 378.99 4.49 -79.02 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.47 Total: 21.88 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 7.27 Total: -2.11 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -4.04 Total: -92.57 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.05 Total: -44.62 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.83 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.05 Total: -9.42 kcal Total: -83.51 4.49 -79.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510710790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.033 kcal (2) G-P(sol) polarization free energy of solvation -83.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds