Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47271 * 2 1 4 4 C 1.40365 * 126.64531 * 265.30054 * 3 2 1 5 5 C 1.35128 * 107.11321 * 180.15289 * 4 3 2 6 6 O 1.33933 * 108.76675 * 359.58673 * 5 4 3 7 7 C 1.34906 * 109.38386 * 0.26221 * 6 5 4 8 8 C 1.46660 * 125.98379 * 179.97438 * 7 6 5 9 9 O 1.21697 * 119.99988 * 172.64256 * 8 7 6 10 10 N 1.34777 * 120.00166 * 352.64442 * 8 7 6 11 11 C 1.46495 * 119.99933 * 3.51940 * 10 8 7 12 12 C 1.46496 * 119.99812 * 183.52410 * 10 8 7 13 13 C 1.53001 * 109.47596 * 89.99988 * 12 10 8 14 14 N 1.46496 * 109.47596 * 179.97438 * 13 12 10 15 15 C 1.34771 * 120.00180 * 179.97438 * 14 13 12 16 16 O 1.21278 * 120.00021 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00070 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.47430 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00360 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99418 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99952 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99944 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99801 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47460 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47037 * 120.00008 * 23 21 19 26 26 H 1.48496 * 109.47231 * 240.00346 * 23 21 19 27 27 H 1.09001 * 109.47060 * 60.00534 * 1 2 3 28 28 H 1.09004 * 109.46673 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47330 * 300.00155 * 1 2 3 30 30 H 1.08995 * 109.47330 * 239.99845 * 2 1 3 31 31 H 1.09004 * 109.46758 * 120.00167 * 2 1 3 32 32 H 1.07996 * 126.44009 * 0.02562 * 4 3 2 33 33 H 1.08000 * 125.61412 * 179.84777 * 5 4 3 34 34 H 1.09001 * 109.47154 * 83.94027 * 11 10 8 35 35 H 1.09001 * 109.47160 * 203.93890 * 11 10 8 36 36 H 1.09005 * 109.47225 * 323.94132 * 11 10 8 37 37 H 1.09003 * 109.46844 * 209.99913 * 12 10 8 38 38 H 1.09002 * 109.47380 * 329.99255 * 12 10 8 39 39 H 1.09000 * 109.46463 * 299.99770 * 13 12 10 40 40 H 1.08998 * 109.46893 * 59.99262 * 13 12 10 41 41 H 0.97006 * 119.99648 * 359.97438 * 14 13 12 42 42 H 1.09003 * 109.47023 * 300.00007 * 17 15 14 43 43 H 1.08998 * 109.47532 * 59.99846 * 17 15 14 44 44 H 0.97001 * 119.99990 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3987 2.1799 -1.1224 5 6 2.7915 3.3918 -0.6719 6 8 2.6755 3.4138 0.6622 7 6 2.2140 2.2210 1.0913 8 6 1.9535 1.8489 2.4858 9 8 1.4115 0.7898 2.7419 10 7 2.3144 2.6798 3.4837 11 6 2.8963 3.9879 3.1734 12 6 2.1247 2.2748 4.8788 13 6 3.3775 1.5495 5.3742 14 7 3.1881 1.1450 6.7694 15 6 4.1678 0.4855 7.4188 16 8 5.2061 0.2266 6.8479 17 6 3.9732 0.0700 8.8542 18 16 5.4546 -0.7895 9.4397 19 6 4.9655 -1.1504 11.0936 20 1 3.9923 -0.8441 11.4478 21 6 5.8305 -1.8291 11.9406 22 7 7.0164 -2.2028 11.5086 23 14 5.3122 -2.2110 13.6942 24 1 3.9429 -1.6875 13.9309 25 1 5.3227 -3.6811 13.9044 26 1 6.2587 -1.5687 14.6411 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.3734 1.8556 -2.1522 33 1 3.1377 4.2094 -1.2867 34 1 2.0976 4.7050 2.9835 35 1 3.4968 4.3279 4.0171 36 1 3.5273 3.9042 2.2885 37 1 1.9496 3.1581 5.4929 38 1 1.2662 1.6069 4.9498 39 1 3.5526 0.6662 4.7600 40 1 4.2360 2.2173 5.3031 41 1 2.3575 1.3518 7.2258 42 1 3.7990 0.9538 9.4679 43 1 3.1143 -0.5972 8.9261 44 1 7.6210 -2.6769 12.1007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527937765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -82.500716 kcal Electronic energy + Delta-G solvation = -26209.288218 eV Core-core repulsion = 22253.835142 eV Total energy + Delta-G solvation = -3955.453076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.73969 -40.98754 -40.42806 -37.48003 -36.01719 -35.48490 -34.58774 -32.48486 -31.96306 -30.67364 -29.37723 -27.73383 -27.53164 -25.40992 -24.33427 -23.07232 -22.07254 -21.69456 -20.30642 -19.83976 -18.62801 -17.96430 -17.78387 -17.44797 -17.22077 -16.88399 -16.82572 -16.69452 -15.99050 -15.61330 -15.56873 -15.18119 -14.82207 -14.74814 -14.63854 -14.41184 -14.15836 -13.98077 -13.74761 -13.57987 -13.31685 -13.22979 -13.16383 -12.92611 -12.89905 -12.59521 -12.41415 -12.28421 -11.96546 -11.72040 -11.31443 -11.16170 -11.04871 -10.70889 -10.27871 -10.22133 -10.00005 -9.53559 -8.67689 -8.35057 -6.13395 0.01387 1.22598 1.39586 1.41659 1.43076 1.53300 1.56879 1.62161 1.93287 2.07875 2.26777 2.42890 2.99206 3.31739 3.49768 3.73161 3.76465 3.84252 3.93656 3.98497 4.22171 4.29891 4.33466 4.37992 4.42827 4.47970 4.50565 4.54778 4.62554 4.68209 4.81738 4.83193 4.87371 5.03852 5.07963 5.23025 5.26008 5.31332 5.37510 5.42221 5.46939 5.85938 6.16421 6.20056 6.44719 6.87156 7.06281 7.19696 8.74518 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024885 B = 0.001789 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.924776 B =15643.143620 C =15972.705118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 C -0.092 4.092 4 C -0.236 4.236 5 C 0.011 3.989 6 O -0.159 6.159 7 C -0.114 4.114 8 C 0.592 3.408 9 O -0.547 6.547 10 N -0.605 5.605 11 C 0.070 3.930 12 C 0.115 3.885 13 C 0.113 3.887 14 N -0.708 5.708 15 C 0.534 3.466 16 O -0.567 6.567 17 C -0.128 4.128 18 S -0.155 6.155 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.273 1.273 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.177 0.823 33 H 0.255 0.745 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.420 0.580 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.579 17.512 -25.848 34.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 C -0.095 4.095 4 C -0.254 4.254 5 C -0.059 4.059 6 O -0.055 6.055 7 C -0.165 4.165 8 C 0.382 3.618 9 O -0.427 6.427 10 N -0.337 5.337 11 C -0.071 4.071 12 C -0.008 4.008 13 C -0.013 4.013 14 N -0.363 5.363 15 C 0.320 3.680 16 O -0.446 6.446 17 C -0.279 4.279 18 S 0.072 5.928 19 C -0.692 4.692 20 H 0.103 0.897 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.201 1.201 26 H -0.199 1.199 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.195 0.805 33 H 0.271 0.729 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.144 0.856 38 H 0.108 0.892 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.258 0.742 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.945 16.732 -26.410 34.234 hybrid contribution -1.221 -0.317 1.596 2.035 sum -15.167 16.415 -24.814 33.395 Atomic orbital electron populations 1.21571 0.93804 1.02225 1.01413 1.20120 0.96873 0.90395 1.02841 1.20944 0.98623 0.97738 0.92157 1.22051 1.08088 0.94726 1.00571 1.25379 0.99307 1.00699 0.80475 1.84278 1.64856 1.32525 1.23831 1.21534 1.13813 0.86893 0.94250 1.16997 0.78410 0.83491 0.82945 1.90858 1.44301 1.24357 1.83172 1.47684 1.62057 1.18519 1.05437 1.22258 0.99556 0.81922 1.03402 1.21623 0.96318 1.01774 0.81062 1.21585 0.99515 0.98730 0.81460 1.45499 1.19144 1.58687 1.12991 1.20129 0.83191 0.76848 0.87839 1.90697 1.29151 1.55632 1.69082 1.23359 1.04115 1.05078 0.95333 1.85626 1.20422 1.72924 1.13852 1.23241 1.05353 1.43355 0.97257 0.89732 1.26162 0.94374 0.94472 1.04345 1.70195 1.08611 1.37829 1.38223 0.84876 0.78897 0.78040 0.75941 1.17918 1.20053 1.19860 0.91671 0.91608 0.94262 0.89259 0.92236 0.80524 0.72901 0.90414 0.88673 0.89990 0.85565 0.89247 0.94458 0.91517 0.74203 0.86575 0.87147 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.84 71.98 0.71 -1.65 16 2 C -0.06 -1.25 5.67 29.85 0.17 -1.08 16 3 C -0.09 -1.72 5.45 -19.74 -0.11 -1.83 16 4 C -0.24 -2.76 10.83 22.07 0.24 -2.52 16 5 C 0.01 0.09 12.08 67.10 0.81 0.90 16 6 O -0.16 -2.25 7.30 -4.98 -0.04 -2.29 16 7 C -0.11 -2.31 6.76 24.07 0.16 -2.15 16 8 C 0.59 14.09 7.64 86.44 0.66 14.75 16 9 O -0.55 -16.36 13.91 -4.34 -0.06 -16.42 16 10 N -0.61 -10.96 2.87 -851.53 -2.45 -13.40 16 11 C 0.07 0.79 9.62 127.77 1.23 2.02 16 12 C 0.12 1.92 5.52 86.38 0.48 2.40 16 13 C 0.11 2.75 6.00 86.38 0.52 3.26 16 14 N -0.71 -18.22 5.56 -463.08 -2.57 -20.80 16 15 C 0.53 20.25 7.85 87.66 0.69 20.94 16 16 O -0.57 -27.39 15.86 -3.02 -0.05 -27.44 16 17 C -0.13 -5.09 6.16 71.23 0.44 -4.65 16 18 S -0.16 -8.76 20.57 -56.49 -1.16 -9.92 16 19 C -0.54 -31.29 9.50 67.95 0.65 -30.65 16 20 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 21 C 0.01 0.63 5.49 84.86 0.47 1.10 16 22 N -0.91 -56.60 13.22 21.65 0.29 -56.31 16 23 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 25 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.04 0.86 7.56 -2.39 -0.02 0.84 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.48 6.91 -2.38 -0.02 1.46 16 32 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.26 -0.51 8.06 -2.91 -0.02 -0.53 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.79 8.03 -2.39 -0.02 0.77 16 36 H 0.08 1.00 5.41 -2.38 -0.01 0.99 16 37 H 0.13 1.19 8.07 -2.39 -0.02 1.17 16 38 H 0.09 1.66 7.37 -2.39 -0.02 1.64 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.42 7.32 8.47 -92.70 -0.79 6.54 16 42 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 43 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 44 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -86.86 387.77 3.33 -83.53 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.24 Total: 16.28 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 7.10 Total: 0.84 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -4.73 Total: -90.51 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -0.14 Total: -46.15 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -86.86 3.33 -83.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527937765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.030 kcal (2) G-P(sol) polarization free energy of solvation -86.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds