Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41382 * 126.58161 * 2 1 4 4 C 1.34505 * 106.84567 * 179.97438 * 3 2 1 5 5 O 1.34307 * 108.42111 * 359.73124 * 4 3 2 6 6 C 1.34304 * 109.47132 * 0.43938 * 5 4 3 7 7 C 1.50700 * 125.78579 * 179.82898 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.68837 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 8 13 13 N 1.46499 * 109.47555 * 180.02562 * 12 11 10 14 14 C 1.46502 * 119.99740 * 89.99934 * 13 12 11 15 15 C 1.34773 * 120.00312 * 270.00762 * 13 12 11 16 16 O 1.21282 * 119.99732 * 359.97438 * 15 13 12 17 17 C 1.50694 * 120.00153 * 179.97438 * 15 13 12 18 18 S 1.81005 * 109.47365 * 179.97438 * 17 15 13 19 19 C 1.76194 * 100.00055 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00473 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99595 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00498 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99636 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47138 * 90.00025 * 23 21 19 25 25 H 1.48502 * 109.46983 * 209.99832 * 23 21 19 26 26 H 1.48496 * 109.47031 * 329.99716 * 23 21 19 27 27 H 1.08998 * 109.47554 * 270.04736 * 1 2 3 28 28 H 1.08995 * 109.46894 * 30.05613 * 1 2 3 29 29 H 1.09001 * 109.46766 * 150.04953 * 1 2 3 30 30 H 1.08007 * 126.57476 * 359.96955 * 3 2 1 31 31 H 1.07999 * 125.79214 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.47210 * 149.69130 * 7 6 5 33 33 H 1.08994 * 109.47551 * 29.68783 * 7 6 5 34 34 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 35 35 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 36 36 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 37 37 H 1.08998 * 109.47382 * 300.00439 * 12 11 10 38 38 H 1.09005 * 109.46800 * 60.00640 * 12 11 10 39 39 H 1.08999 * 109.46870 * 90.00232 * 14 13 12 40 40 H 1.09005 * 109.47107 * 210.00147 * 14 13 12 41 41 H 1.08997 * 109.46990 * 330.00278 * 14 13 12 42 42 H 1.08997 * 109.47027 * 299.99606 * 17 15 13 43 43 H 1.09000 * 109.47497 * 59.99840 * 17 15 13 44 44 H 0.96989 * 120.00244 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6811 0.0006 5 8 3.5848 -0.6616 0.0069 6 6 2.3087 -1.0801 0.0007 7 6 1.8523 -2.5164 0.0011 8 6 1.7006 -2.9956 -1.4196 9 8 1.9401 -2.2450 -2.3417 10 7 1.3048 -4.2602 -1.6656 11 6 1.1632 -4.7280 -3.0467 12 6 0.7046 -6.1876 -3.0464 13 7 0.5636 -6.6555 -4.4275 14 6 1.7035 -7.2698 -5.1127 15 6 -0.6147 -6.5208 -5.0677 16 8 -1.5585 -6.0126 -4.5002 17 6 -0.7596 -7.0016 -6.4885 18 16 -2.4459 -6.6835 -7.0642 19 6 -2.3361 -7.3241 -8.7019 20 1 -1.4072 -7.7469 -9.0552 21 6 -3.4431 -7.2843 -9.5383 22 7 -4.5750 -6.7685 -9.1079 23 14 -3.3268 -7.9641 -11.2744 24 1 -3.6936 -9.4031 -11.2681 25 1 -4.2574 -7.2200 -12.1607 26 1 -1.9372 -7.8096 -11.7744 27 1 -0.3634 0.0008 1.0276 28 1 -0.3633 0.8894 -0.5147 29 1 -0.3633 -0.8905 -0.5131 30 1 2.0366 2.1690 -0.0005 31 1 4.5060 1.2924 0.0011 32 1 0.8938 -2.5930 0.5146 33 1 2.5902 -3.1320 0.5154 34 1 1.1136 -4.8607 -0.9282 35 1 0.4246 -4.1155 -3.5638 36 1 2.1229 -4.6483 -3.5574 37 1 1.4429 -6.8003 -2.5292 38 1 -0.2552 -6.2667 -2.5358 39 1 1.6944 -8.3459 -4.9399 40 1 1.6334 -7.0730 -6.1826 41 1 2.6307 -6.8474 -4.7256 42 1 -0.0518 -6.4713 -7.1254 43 1 -0.5569 -8.0717 -6.5324 44 1 -5.3487 -6.7410 -9.6922 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528625134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = -86.537434 kcal Electronic energy + Delta-G solvation = -25886.723379 eV Core-core repulsion = 21931.095258 eV Total energy + Delta-G solvation = -3955.628121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.53798 -41.07464 -40.52277 -37.18910 -35.66739 -35.23292 -34.59182 -33.25183 -31.86483 -30.13711 -29.26557 -27.70441 -27.56016 -26.78288 -24.13420 -22.48283 -21.98175 -20.81262 -20.42392 -19.55262 -18.45221 -18.13596 -17.97746 -17.41918 -16.95260 -16.88384 -16.73891 -16.66038 -16.35525 -15.77364 -15.43862 -15.02093 -14.75917 -14.52868 -14.31350 -14.29900 -14.22695 -13.98284 -13.64729 -13.57243 -13.40329 -13.25185 -13.17015 -13.05731 -13.00674 -12.88726 -12.64378 -12.39513 -12.34362 -11.72739 -11.21627 -11.14777 -10.92948 -10.52759 -10.27755 -10.22496 -9.80077 -9.29167 -8.68201 -8.35316 -6.13678 0.72173 1.23769 1.42041 1.43345 1.51137 1.53787 1.55832 1.62336 1.89923 2.11663 2.26633 2.49298 2.98795 3.25743 3.58787 3.68645 3.80914 3.95285 3.96701 4.02255 4.05272 4.20670 4.27670 4.32291 4.37951 4.43250 4.47794 4.60893 4.69577 4.74249 4.76768 4.87349 4.89584 4.94973 4.97133 5.12242 5.25173 5.31492 5.41093 5.53797 5.64876 6.18453 6.19773 6.20739 6.46748 7.05860 7.09738 7.18814 8.73918 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019106 B = 0.001825 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.177140 B =15337.858482 C =16001.309527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.184 4.184 3 C -0.231 4.231 4 C -0.039 4.039 5 O -0.190 6.190 6 C -0.023 4.023 7 C -0.051 4.051 8 C 0.510 3.490 9 O -0.583 6.583 10 N -0.708 5.708 11 C 0.112 3.888 12 C 0.112 3.888 13 N -0.610 5.610 14 C 0.069 3.931 15 C 0.530 3.470 16 O -0.561 6.561 17 C -0.125 4.125 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.258 1.258 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.162 0.838 31 H 0.236 0.764 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.423 0.577 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.131 0.869 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.225 5.163 22.784 30.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.186 4.186 3 C -0.250 4.250 4 C -0.105 4.105 5 O -0.086 6.086 6 C -0.073 4.073 7 C -0.090 4.090 8 C 0.297 3.703 9 O -0.463 6.463 10 N -0.362 5.362 11 C -0.013 4.013 12 C -0.011 4.011 13 N -0.344 5.344 14 C -0.072 4.072 15 C 0.318 3.682 16 O -0.439 6.439 17 C -0.276 4.276 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.191 1.191 25 H -0.204 1.204 26 H -0.182 1.182 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.180 0.820 31 H 0.252 0.748 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.262 0.738 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.149 0.851 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.094 6.252 22.932 30.488 hybrid contribution 0.471 -0.552 -1.678 1.828 sum 19.565 5.700 21.254 29.445 Atomic orbital electron populations 1.20219 0.88408 1.02486 1.02930 1.20610 0.98078 0.92765 1.07139 1.22042 0.93037 1.00527 1.09397 1.24682 1.00941 0.80084 1.04837 1.83958 1.29035 1.23889 1.71747 1.21726 0.81167 0.96315 1.08091 1.20194 1.06659 0.88736 0.93422 1.21053 0.75808 0.81523 0.91923 1.90758 1.51337 1.56071 1.48103 1.45592 1.68865 1.12973 1.08819 1.21514 1.00672 0.95577 0.83572 1.21631 1.03961 0.92848 0.82628 1.47727 1.11272 1.60905 1.14473 1.22154 0.87749 0.99165 0.98154 1.20186 0.82688 0.77774 0.87597 1.90687 1.40287 1.44723 1.68166 1.23384 1.02741 1.05500 0.95950 1.85581 1.10382 1.81284 1.15508 1.23193 1.01199 1.46281 0.98633 0.89852 1.26147 0.93931 0.95113 1.04058 1.70181 1.02367 1.43686 1.38533 0.84946 0.78790 0.78304 0.75897 1.19135 1.20405 1.18196 0.89371 0.91587 0.92515 0.82018 0.74759 0.83030 0.83601 0.73850 0.95285 0.91270 0.85095 0.90246 0.90234 0.91009 0.88153 0.87642 0.87095 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 9.99 71.24 0.71 -0.75 16 2 C -0.18 -3.89 6.16 -19.94 -0.12 -4.01 16 3 C -0.23 -4.38 10.87 22.19 0.24 -4.13 16 4 C -0.04 -0.66 12.09 66.96 0.81 0.15 16 5 O -0.19 -4.11 10.65 -2.54 -0.03 -4.14 16 6 C -0.02 -0.47 5.81 24.83 0.14 -0.33 16 7 C -0.05 -0.67 5.85 29.10 0.17 -0.49 16 8 C 0.51 10.74 7.82 87.66 0.69 11.43 16 9 O -0.58 -19.38 16.03 -3.04 -0.05 -19.43 16 10 N -0.71 -11.14 5.56 -463.06 -2.57 -13.71 16 11 C 0.11 2.45 6.00 86.38 0.52 2.97 16 12 C 0.11 2.05 5.52 86.38 0.48 2.53 16 13 N -0.61 -14.77 2.87 -846.77 -2.43 -17.20 16 14 C 0.07 1.08 10.24 127.77 1.31 2.39 16 15 C 0.53 19.47 7.69 87.66 0.67 20.15 16 16 O -0.56 -25.69 15.44 -3.04 -0.05 -25.74 16 17 C -0.12 -4.96 4.71 71.23 0.34 -4.62 16 18 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 19 C -0.55 -31.25 9.50 67.96 0.65 -30.60 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.70 5.50 84.86 0.47 1.16 16 22 N -0.91 -56.34 13.22 21.65 0.29 -56.05 16 23 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 26 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.05 7.78 -2.39 -0.02 1.04 16 30 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.24 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.15 1.06 7.76 -2.38 -0.02 1.04 16 33 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.42 2.87 8.47 -92.71 -0.79 2.08 16 35 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.13 1.15 8.07 -2.39 -0.02 1.13 16 38 H 0.08 1.71 7.42 -2.38 -0.02 1.70 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.24 6.44 -2.38 -0.02 1.23 16 41 H 0.10 0.99 8.07 -2.39 -0.02 0.97 16 42 H 0.11 3.86 7.40 -2.40 -0.02 3.84 16 43 H 0.11 3.92 8.11 -2.40 -0.02 3.90 16 44 H 0.27 15.54 8.31 -92.72 -0.77 14.77 16 Total: -1.00 -92.59 393.59 3.32 -89.27 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.23 Total: 15.23 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 7.06 Total: -4.18 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -4.72 Total: -86.96 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.12 Total: -49.31 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -92.59 3.32 -89.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528625134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.734 kcal (2) G-P(sol) polarization free energy of solvation -92.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds