Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35132 * 126.44829 * 2 1 4 4 O 1.33924 * 108.77185 * 179.97438 * 3 2 1 5 5 C 1.34913 * 109.38499 * 359.97438 * 4 3 2 6 6 C 1.46658 * 125.99051 * 179.97438 * 5 4 3 7 7 O 1.21696 * 120.00328 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99683 * 0.02989 * 6 5 4 9 9 C 1.46502 * 119.99830 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46958 * 35.00331 * 9 8 6 11 11 C 1.53000 * 109.46861 * 274.99901 * 9 8 6 12 12 C 1.52997 * 109.47004 * 154.99864 * 9 8 6 13 13 H 1.09001 * 109.47502 * 295.00420 * 12 9 8 14 14 C 1.53006 * 109.47127 * 55.00263 * 12 9 8 15 15 N 1.46500 * 109.47007 * 175.00044 * 12 9 8 16 16 C 1.34773 * 119.99910 * 155.00372 * 15 12 9 17 17 O 1.21288 * 120.00271 * 359.97438 * 16 15 12 18 18 C 1.50699 * 119.99928 * 179.97438 * 16 15 12 19 19 S 1.81000 * 109.47331 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00488 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99536 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00410 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99884 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00262 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47021 * 59.99521 * 24 22 20 26 26 H 1.48493 * 109.47221 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46623 * 299.99932 * 24 22 20 28 28 C 1.36544 * 108.02477 * 0.26363 * 5 4 3 29 29 H 1.08999 * 109.47376 * 90.02368 * 1 2 3 30 30 H 1.08994 * 109.47642 * 210.02738 * 1 2 3 31 31 H 1.09010 * 109.47075 * 330.02914 * 1 2 3 32 32 H 1.08007 * 125.61100 * 359.96489 * 3 2 1 33 33 H 0.97001 * 120.00108 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.46818 * 180.02562 * 11 9 8 35 35 H 1.08994 * 109.47281 * 299.99657 * 11 9 8 36 36 H 1.09004 * 109.47031 * 60.00509 * 11 9 8 37 37 H 1.09001 * 109.47002 * 299.99574 * 14 12 9 38 38 H 1.08993 * 109.46955 * 60.00011 * 14 12 9 39 39 H 1.09000 * 109.47050 * 179.97438 * 14 12 9 40 40 H 0.96995 * 120.00293 * 334.99551 * 15 12 9 41 41 H 1.09000 * 109.47712 * 299.99892 * 18 16 15 42 42 H 1.08995 * 109.47183 * 60.00106 * 18 16 15 43 43 H 0.97002 * 119.99766 * 179.97438 * 23 22 20 44 44 H 1.07999 * 126.64698 * 179.69902 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3098 1.0870 0.0000 4 8 3.5858 0.6803 0.0006 5 6 3.6260 -0.6682 0.0015 6 6 4.8378 -1.4943 0.0018 7 8 4.7470 -2.7078 0.0022 8 7 6.0520 -0.9093 0.0017 9 6 7.2626 -1.7345 0.0026 10 1 7.0888 -2.6351 -0.5863 11 6 7.6127 -2.1246 1.4400 12 6 8.4204 -0.9419 -0.6073 13 1 8.2095 -0.7404 -1.6575 14 6 8.5837 0.3815 0.1431 15 7 9.6564 -1.7209 -0.4980 16 6 10.6678 -1.5045 -1.3621 17 8 10.5547 -0.6652 -2.2304 18 6 11.9394 -2.3054 -1.2494 19 16 13.0957 -1.7866 -2.5417 20 6 14.4520 -2.8533 -2.1850 21 1 14.3877 -3.5526 -1.3644 22 6 15.6030 -2.7950 -2.9585 23 7 15.6815 -1.9424 -3.9583 24 14 17.0406 -3.9265 -2.5808 25 1 16.6015 -5.3403 -2.6969 26 1 18.1398 -3.6692 -3.5455 27 1 17.5229 -3.6698 -1.1999 28 6 2.3407 -1.1292 -0.0044 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3634 0.8903 0.5134 32 1 1.9771 2.1145 -0.0005 33 1 6.1244 0.0580 0.0011 34 1 8.5137 -2.7382 1.4407 35 1 7.7865 -1.2240 2.0288 36 1 6.7878 -2.6893 1.8745 37 1 7.6641 0.9611 0.0618 38 1 8.7947 0.1800 1.1933 39 1 9.4089 0.9459 -0.2911 40 1 9.7468 -2.3922 0.1961 41 1 12.3889 -2.1378 -0.2706 42 1 11.7133 -3.3649 -1.3687 43 1 16.4860 -1.9013 -4.4986 44 1 2.0266 -2.1625 -0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571754932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = -90.235453 kcal Electronic energy + Delta-G solvation = -26057.397805 eV Core-core repulsion = 22101.609325 eV Total energy + Delta-G solvation = -3955.788480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.72112 -41.32718 -40.44793 -38.10647 -35.44455 -34.97903 -34.57522 -32.73962 -31.60345 -30.54703 -29.79477 -28.16141 -27.65184 -26.02830 -24.55088 -22.23251 -22.10653 -21.15558 -20.99321 -19.91327 -19.10551 -18.02740 -17.57831 -17.49067 -17.16649 -16.87474 -16.80562 -16.44140 -16.04314 -15.69306 -15.52143 -15.34666 -14.76486 -14.50413 -14.40207 -14.19711 -14.10109 -13.96062 -13.72022 -13.53160 -13.40803 -13.25138 -13.16187 -12.86582 -12.85530 -12.61329 -12.56429 -12.16161 -12.00184 -11.74050 -11.53086 -11.12227 -10.97721 -10.76089 -10.39772 -10.27233 -10.21073 -9.57561 -8.65666 -8.33902 -6.11823 -0.02700 1.24486 1.31793 1.43593 1.44431 1.52474 1.58976 1.63504 1.98713 2.02986 2.28000 2.41392 3.00305 3.31904 3.40063 3.63005 3.76564 3.80411 3.94514 4.03589 4.05199 4.29326 4.32127 4.35030 4.41867 4.52274 4.61833 4.64748 4.66609 4.86523 4.87782 4.91025 4.92758 5.02426 5.07913 5.12083 5.21308 5.36766 5.42275 5.42952 5.49467 5.79805 6.20296 6.30440 6.45625 6.89211 7.07492 7.21457 8.74968 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.034983 B = 0.001706 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.190072 B =16404.104893 C =16670.555697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.208 4.208 3 C 0.008 3.992 4 O -0.167 6.167 5 C -0.105 4.105 6 C 0.605 3.395 7 O -0.555 6.555 8 N -0.701 5.701 9 C 0.144 3.856 10 H 0.083 0.917 11 C -0.165 4.165 12 C 0.141 3.859 13 H 0.072 0.928 14 C -0.164 4.164 15 N -0.706 5.706 16 C 0.538 3.462 17 O -0.561 6.561 18 C -0.131 4.131 19 S -0.149 6.149 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.263 1.263 26 H -0.279 1.279 27 H -0.261 1.261 28 C -0.123 4.123 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.252 0.748 33 H 0.415 0.585 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.416 0.584 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.865 5.239 15.088 33.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.209 4.209 3 C -0.062 4.062 4 O -0.062 6.062 5 C -0.156 4.156 6 C 0.393 3.607 7 O -0.435 6.435 8 N -0.354 5.354 9 C 0.039 3.961 10 H 0.101 0.899 11 C -0.223 4.223 12 C 0.035 3.965 13 H 0.090 0.910 14 C -0.222 4.222 15 N -0.363 5.363 16 C 0.324 3.676 17 O -0.438 6.438 18 C -0.282 4.282 19 S 0.078 5.922 20 C -0.696 4.696 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.819 3.181 25 H -0.188 1.188 26 H -0.204 1.204 27 H -0.186 1.186 28 C -0.144 4.144 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.268 0.732 33 H 0.254 0.746 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.255 0.745 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -29.727 6.017 13.520 33.207 hybrid contribution 1.075 -1.476 0.927 2.048 sum -28.652 4.541 14.448 32.408 Atomic orbital electron populations 1.20260 0.86702 1.03918 1.03086 1.20849 0.99145 0.91771 1.09139 1.25120 0.78725 1.01704 1.00625 1.84048 1.30724 1.20691 1.70745 1.21742 0.95665 0.81386 1.16850 1.16693 0.81902 0.86124 0.76014 1.90873 1.86548 1.13754 1.52368 1.45873 1.04318 1.11343 1.73858 1.21043 0.82675 0.93727 0.98671 0.89903 1.22247 1.02580 1.03045 0.94385 1.21001 0.83051 0.91790 1.00657 0.90958 1.22237 1.02730 0.95702 1.01537 1.45789 1.14333 1.41806 1.34325 1.20040 0.84579 0.82409 0.80565 1.90698 1.81601 1.35504 1.36035 1.23383 0.96264 1.03573 1.05005 1.85560 1.12544 1.53327 1.40795 1.23189 1.01898 1.24493 1.20019 0.89865 1.26110 1.01393 0.97496 0.94043 1.70178 1.29460 1.36386 1.18730 0.85018 0.76356 0.78193 0.78521 1.18767 1.20437 1.18594 1.22104 0.90938 1.01393 0.99952 0.90663 0.91298 0.89405 0.73245 0.74556 0.89832 0.90091 0.92286 0.89781 0.89833 0.93560 0.74514 0.86915 0.87238 0.92015 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.39 71.23 0.74 0.23 16 2 C -0.21 -2.42 6.14 -20.06 -0.12 -2.54 16 3 C 0.01 0.07 12.00 67.10 0.81 0.87 16 4 O -0.17 -2.44 10.40 -4.97 -0.05 -2.49 16 5 C -0.10 -1.98 7.13 24.07 0.17 -1.80 16 6 C 0.61 13.26 7.75 86.44 0.67 13.93 16 7 O -0.56 -15.77 16.53 -4.34 -0.07 -15.84 16 8 N -0.70 -12.14 4.98 -446.51 -2.23 -14.37 16 9 C 0.14 2.61 2.62 44.99 0.12 2.72 16 10 H 0.08 1.83 7.58 -2.38 -0.02 1.81 16 11 C -0.16 -2.33 9.00 71.98 0.65 -1.69 16 12 C 0.14 2.99 2.62 44.99 0.12 3.10 16 13 H 0.07 1.93 7.58 -2.39 -0.02 1.92 16 14 C -0.16 -2.93 9.00 71.98 0.65 -2.28 16 15 N -0.71 -16.88 4.99 -442.52 -2.21 -19.09 16 16 C 0.54 19.18 7.81 87.66 0.68 19.87 16 17 O -0.56 -25.23 15.53 -3.05 -0.05 -25.28 16 18 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 19 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 20 C -0.55 -31.16 9.50 67.95 0.65 -30.52 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.82 5.49 84.86 0.47 1.29 16 23 N -0.91 -55.92 13.22 21.65 0.29 -55.64 16 24 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 27 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 28 C -0.12 -2.12 10.57 22.39 0.24 -1.88 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 32 H 0.25 -0.10 8.06 -2.91 -0.02 -0.12 16 33 H 0.42 5.60 6.33 -92.71 -0.59 5.01 16 34 H 0.08 0.96 6.29 -2.39 -0.02 0.95 16 35 H 0.08 0.93 6.56 -2.39 -0.02 0.92 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.09 6.29 -2.39 -0.02 1.07 16 38 H 0.08 1.19 6.56 -2.39 -0.02 1.17 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 40 H 0.42 7.22 6.58 -92.71 -0.61 6.61 16 41 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 42 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -82.32 386.27 2.66 -79.66 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.15 Total: 20.27 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 6.27 Total: -3.34 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -4.15 Total: -89.09 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -0.17 Total: -43.61 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -82.32 2.66 -79.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571754932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.576 kcal (2) G-P(sol) polarization free energy of solvation -82.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds