Wall clock time and date at job start Sat Apr 11 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35130 * 126.44581 * 2 1 4 4 O 1.33928 * 108.77095 * 179.97438 * 3 2 1 5 5 C 1.34915 * 109.38419 * 359.97438 * 4 3 2 6 6 C 1.46652 * 125.98700 * 180.02562 * 5 4 3 7 7 O 1.21700 * 120.00059 * 180.02562 * 6 5 4 8 8 N 1.34780 * 120.00085 * 0.02649 * 6 5 4 9 9 C 1.46500 * 119.99910 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47129 * 324.99754 * 9 8 6 11 11 C 1.52997 * 109.47473 * 85.00011 * 9 8 6 12 12 C 1.52999 * 109.46944 * 205.00356 * 9 8 6 13 13 H 1.08994 * 109.47465 * 64.99757 * 12 9 8 14 14 C 1.53003 * 109.47015 * 304.99481 * 12 9 8 15 15 N 1.46500 * 109.47177 * 184.99965 * 12 9 8 16 16 C 1.34774 * 120.00131 * 204.99570 * 15 12 9 17 17 O 1.21282 * 120.00100 * 359.97438 * 16 15 12 18 18 C 1.50699 * 120.00308 * 179.97438 * 16 15 12 19 19 S 1.81000 * 109.47245 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99748 * 180.02562 * 19 18 16 21 21 H 1.07993 * 120.00220 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99482 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00303 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99799 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47185 * 89.99674 * 24 22 20 26 26 H 1.48489 * 109.47201 * 209.99588 * 24 22 20 27 27 H 1.48496 * 109.47058 * 330.00109 * 24 22 20 28 28 C 1.36546 * 108.02411 * 0.26900 * 5 4 3 29 29 H 1.09007 * 109.46698 * 89.98364 * 1 2 3 30 30 H 1.09005 * 109.47136 * 209.97801 * 1 2 3 31 31 H 1.08992 * 109.47185 * 329.98081 * 1 2 3 32 32 H 1.08005 * 125.61311 * 359.95255 * 3 2 1 33 33 H 0.96994 * 120.00115 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47153 * 59.99757 * 11 9 8 35 35 H 1.09001 * 109.46832 * 299.99948 * 11 9 8 36 36 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 37 37 H 1.09000 * 109.46883 * 59.99966 * 14 12 9 38 38 H 1.09001 * 109.47405 * 179.97438 * 14 12 9 39 39 H 1.08994 * 109.47229 * 300.00420 * 14 12 9 40 40 H 0.97004 * 120.00210 * 24.99770 * 15 12 9 41 41 H 1.08996 * 109.47391 * 300.00333 * 18 16 15 42 42 H 1.09003 * 109.46792 * 60.00127 * 18 16 15 43 43 H 0.97003 * 119.99853 * 180.02562 * 23 22 20 44 44 H 1.07999 * 126.64234 * 179.69662 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0006 5 6 3.6260 -0.6682 0.0015 6 6 4.8379 -1.4941 0.0029 7 8 4.7471 -2.7077 0.0032 8 7 6.0521 -0.9092 0.0038 9 6 7.2626 -1.7343 0.0046 10 1 7.0883 -2.6346 0.5939 11 6 7.6144 -2.1253 -1.4321 12 6 8.4199 -0.9414 0.6153 13 1 8.2079 -0.7393 1.6652 14 6 8.5839 0.3816 -0.1356 15 7 9.6560 -1.7203 0.5078 16 6 10.6665 -1.5034 1.3727 17 8 10.5528 -0.6631 2.2398 18 6 11.9379 -2.3050 1.2625 19 16 13.0929 -1.7853 2.5556 20 6 14.4496 -2.8522 2.2007 21 1 14.3861 -3.5520 1.3806 22 6 15.5994 -2.7939 2.9760 23 7 15.6766 -1.9413 3.9759 24 14 17.0375 -3.9254 2.6004 25 1 17.9519 -3.2608 1.6372 26 1 17.7729 -4.2245 3.8552 27 1 16.5310 -5.1902 2.0098 28 6 2.3408 -1.1292 -0.0046 29 1 -0.3633 0.0003 -1.0278 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5141 32 1 1.9770 2.1145 -0.0007 33 1 6.1245 0.0581 0.0032 34 1 7.7887 -1.2250 -2.0214 35 1 6.7899 -2.6903 -1.8670 36 1 8.5153 -2.7389 -1.4315 37 1 7.6642 0.9611 -0.0557 38 1 9.4080 0.9468 0.2996 39 1 8.7959 0.1796 -1.1855 40 1 9.7471 -2.3921 -0.1859 41 1 11.7111 -3.3643 1.3829 42 1 12.3885 -2.1388 0.2840 43 1 16.4803 -1.9003 4.5174 44 1 2.0267 -2.1625 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571754934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:30 Heat of formation + Delta-G solvation = -64.034869 kcal Electronic energy + Delta-G solvation = -26056.349226 eV Core-core repulsion = 22101.696889 eV Total energy + Delta-G solvation = -3954.652337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.14500 -40.34672 -39.25435 -37.03829 -34.78161 -34.04875 -32.43425 -31.70791 -30.78726 -29.72708 -28.51217 -27.73822 -25.51491 -25.23816 -23.74088 -21.57991 -21.00471 -20.35855 -19.98341 -18.54417 -17.86716 -16.90305 -16.83971 -16.62158 -16.18067 -15.83345 -15.13487 -14.93658 -14.80650 -14.64384 -14.48845 -14.04366 -13.92186 -13.65589 -13.49553 -13.35398 -13.20001 -13.07696 -12.87240 -12.57898 -12.48098 -12.20591 -12.05631 -11.93436 -11.27621 -11.11779 -11.06619 -11.02674 -10.76925 -10.66180 -10.17031 -9.82686 -9.60226 -9.44153 -9.08242 -9.02859 -8.99733 -8.24877 -6.50821 -6.22252 -3.92906 0.63409 1.84855 2.21238 2.65916 2.79192 3.04060 3.09497 3.22288 3.28350 3.32986 3.70588 4.16454 4.19933 4.29911 4.32160 4.48671 4.61064 4.82357 4.88061 5.06860 5.12338 5.13048 5.14698 5.16812 5.17966 5.33048 5.38383 5.45205 5.47087 5.50251 5.59806 5.63678 5.76834 5.87164 5.90724 5.93481 5.99948 6.12542 6.16031 6.37902 6.56196 7.03768 7.59096 7.63329 7.67826 8.34730 8.56008 9.23233 10.85154 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.034985 B = 0.001706 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.140499 B =16404.317495 C =16671.059768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.194 4.194 3 C -0.007 4.007 4 O -0.162 6.162 5 C -0.077 4.077 6 C 0.606 3.394 7 O -0.517 6.517 8 N -0.711 5.711 9 C 0.135 3.865 10 H 0.099 0.901 11 C -0.168 4.168 12 C 0.138 3.862 13 H 0.095 0.905 14 C -0.169 4.169 15 N -0.732 5.732 16 C 0.535 3.465 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C -0.116 4.116 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.210 0.790 33 H 0.407 0.593 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.399 0.601 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.774 5.181 -12.896 31.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.196 4.196 3 C -0.077 4.077 4 O -0.057 6.057 5 C -0.129 4.129 6 C 0.392 3.608 7 O -0.394 6.394 8 N -0.364 5.364 9 C 0.030 3.970 10 H 0.117 0.883 11 C -0.227 4.227 12 C 0.032 3.968 13 H 0.113 0.887 14 C -0.227 4.227 15 N -0.388 5.388 16 C 0.321 3.679 17 O -0.389 6.389 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.136 4.136 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.227 0.773 33 H 0.244 0.756 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.235 0.765 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -28.613 5.955 -11.277 31.326 hybrid contribution 0.950 -1.515 -1.589 2.392 sum -27.663 4.440 -12.867 30.830 Atomic orbital electron populations 1.20196 0.88506 1.03014 1.02412 1.20517 0.97828 0.92368 1.08868 1.24240 0.79836 1.00138 1.03486 1.84059 1.29440 1.21615 1.70632 1.22006 0.96075 0.80620 1.14223 1.16524 0.81222 0.86399 0.76686 1.90905 1.85943 1.12194 1.50379 1.45973 1.04903 1.10970 1.74549 1.21202 0.83216 0.94665 0.97886 0.88251 1.22261 1.02346 1.02274 0.95776 1.20956 0.83559 0.90932 1.01377 0.88664 1.22278 1.02477 0.96920 1.01048 1.46075 1.15217 1.41985 1.35547 1.20334 0.84143 0.83115 0.80312 1.90704 1.80751 1.33466 1.33943 1.23537 0.97232 1.02556 1.07125 1.85395 1.09776 1.51806 1.36307 1.22872 1.01567 1.24364 1.19634 0.90898 1.24988 0.98184 0.95916 0.94450 1.70016 1.28408 1.34468 1.17393 0.86167 0.81095 0.80294 0.77947 1.20273 1.20748 1.19687 1.21873 0.90514 1.00679 1.00555 0.91196 0.91179 0.91347 0.77336 0.75614 0.91546 0.91527 0.91101 0.92213 0.90892 0.91759 0.76525 0.89113 0.89137 0.92178 0.82209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.39 36.01 0.37 0.03 16 2 C -0.19 -1.30 6.14 -104.93 -0.64 -1.94 16 3 C -0.01 -0.04 12.00 29.63 0.36 0.31 16 4 O -0.16 -1.32 10.40 5.00 0.05 -1.26 16 5 C -0.08 -0.74 7.13 -36.80 -0.26 -1.00 16 6 C 0.61 6.60 7.75 -12.86 -0.10 6.50 16 7 O -0.52 -7.13 16.53 5.19 0.09 -7.05 16 8 N -0.71 -6.41 4.98 -55.12 -0.27 -6.69 16 9 C 0.14 1.29 2.62 -67.93 -0.18 1.11 16 10 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 11 C -0.17 -1.37 9.00 37.16 0.33 -1.03 16 12 C 0.14 1.52 2.62 -67.93 -0.18 1.34 16 13 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 14 C -0.17 -1.64 9.00 37.16 0.33 -1.31 16 15 N -0.73 -9.22 4.99 -53.81 -0.27 -9.49 16 16 C 0.53 9.60 7.81 -10.99 -0.09 9.52 16 17 O -0.51 -11.28 15.52 5.56 0.09 -11.19 16 18 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 24 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.12 -1.01 10.57 -39.39 -0.42 -1.43 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.21 0.40 8.06 -52.48 -0.42 -0.02 16 33 H 0.41 3.02 6.33 -40.82 -0.26 2.76 16 34 H 0.07 0.49 6.57 -51.93 -0.34 0.14 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.51 6.29 -51.93 -0.33 0.18 16 37 H 0.06 0.45 6.29 -51.93 -0.33 0.12 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 40 H 0.40 3.96 6.58 -40.82 -0.27 3.69 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -36.18 386.27 -7.04 -43.22 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.00 Total: 3.08 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -0.05 Total: -3.61 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.19 Total: -41.53 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.22 Total: -19.50 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.18 -7.04 -43.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571754934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.810 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds