Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35134 * 126.44041 * 2 1 4 4 O 1.33935 * 108.76349 * 180.02562 * 3 2 1 5 5 C 1.34918 * 109.38527 * 359.97438 * 4 3 2 6 6 C 1.46653 * 125.98578 * 180.02562 * 5 4 3 7 7 O 1.21697 * 119.99684 * 174.15940 * 6 5 4 8 8 N 1.34771 * 120.00359 * 354.42845 * 6 5 4 9 9 C 1.46504 * 119.99659 * 354.39514 * 8 6 5 10 10 C 1.46498 * 120.00378 * 174.39127 * 8 6 5 11 11 C 1.53001 * 109.46975 * 90.00260 * 10 8 6 12 12 H 1.08997 * 109.47162 * 65.00673 * 11 10 8 13 13 C 1.53002 * 109.46844 * 185.00227 * 11 10 8 14 14 N 1.46502 * 109.47163 * 304.99810 * 11 10 8 15 15 C 1.34779 * 119.99486 * 154.99937 * 14 11 10 16 16 O 1.21273 * 120.00400 * 0.02562 * 15 14 11 17 17 C 1.50702 * 119.99598 * 180.02562 * 15 14 11 18 18 S 1.80996 * 109.47008 * 180.02562 * 17 15 14 19 19 C 1.76206 * 99.99910 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99914 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99911 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00182 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47197 * 89.99583 * 23 21 19 25 25 H 1.48496 * 109.47202 * 209.99606 * 23 21 19 26 26 H 1.48506 * 109.47131 * 329.99707 * 23 21 19 27 27 C 1.36546 * 108.02548 * 0.26728 * 5 4 3 28 28 H 1.09000 * 109.47090 * 89.96912 * 1 2 3 29 29 H 1.08995 * 109.46958 * 209.97563 * 1 2 3 30 30 H 1.09008 * 109.46646 * 329.97422 * 1 2 3 31 31 H 1.08000 * 125.61995 * 0.05941 * 3 2 1 32 32 H 1.08996 * 109.47247 * 85.19247 * 9 8 6 33 33 H 1.09004 * 109.46899 * 205.18979 * 9 8 6 34 34 H 1.08997 * 109.47450 * 325.18935 * 9 8 6 35 35 H 1.09003 * 109.47474 * 210.00377 * 10 8 6 36 36 H 1.09003 * 109.47007 * 330.00538 * 10 8 6 37 37 H 1.08996 * 109.47326 * 300.00019 * 13 11 10 38 38 H 1.08999 * 109.47586 * 60.00047 * 13 11 10 39 39 H 1.09004 * 109.46927 * 180.02562 * 13 11 10 40 40 H 0.96992 * 119.99949 * 335.00380 * 14 11 10 41 41 H 1.08994 * 109.47259 * 300.00574 * 17 15 14 42 42 H 1.09007 * 109.47020 * 60.00478 * 17 15 14 43 43 H 0.96996 * 119.99983 * 180.02562 * 22 21 19 44 44 H 1.07996 * 126.64637 * 179.73839 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6804 -0.0006 5 6 3.6260 -0.6682 -0.0004 6 6 4.8379 -1.4941 -0.0003 7 8 4.7501 -2.7031 0.1071 8 7 6.0489 -0.9138 -0.1138 9 6 6.1507 0.5267 -0.3602 10 6 7.2636 -1.7235 0.0094 11 6 7.6693 -2.2474 -1.3697 12 1 7.9451 -1.4095 -2.0100 13 6 8.8633 -3.1931 -1.2249 14 7 6.5440 -2.9698 -1.9681 15 6 6.4519 -3.0829 -3.3079 16 8 7.3007 -2.5871 -4.0182 17 6 5.2940 -3.8255 -3.9235 18 16 5.4531 -3.8033 -5.7263 19 6 4.0115 -4.7134 -6.1719 20 1 3.3515 -5.0894 -5.4041 21 6 3.7247 -4.9479 -7.5095 22 7 4.5292 -4.4900 -8.4452 23 14 2.1961 -5.9120 -7.9819 24 1 1.0558 -4.9770 -8.1580 25 1 2.4420 -6.6379 -9.2538 26 1 1.8750 -6.8876 -6.9093 27 6 2.3408 -1.1292 -0.0057 28 1 -0.3633 0.0006 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 1.9770 2.1146 0.0009 32 1 6.1023 1.0619 0.5881 33 1 7.0984 0.7451 -0.8526 34 1 5.3273 0.8451 -0.9995 35 1 8.0685 -1.1116 0.4168 36 1 7.0736 -2.5646 0.6761 37 1 9.7006 -2.6557 -0.7797 38 1 8.5877 -4.0310 -0.5846 39 1 9.1526 -3.5660 -2.2075 40 1 5.8653 -3.3666 -1.4000 41 1 5.2956 -4.8570 -3.5716 42 1 4.3593 -3.3446 -3.6350 43 1 4.3286 -4.6536 -9.3800 44 1 2.0266 -2.1624 -0.0110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572288867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -81.164565 kcal Electronic energy + Delta-G solvation = -27475.856962 eV Core-core repulsion = 23520.461826 eV Total energy + Delta-G solvation = -3955.395136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.74298 -41.34223 -40.26419 -37.52365 -35.93184 -35.06752 -34.62072 -32.83776 -31.59676 -30.11495 -28.78687 -28.07780 -27.69316 -27.11278 -24.06524 -22.72157 -22.11237 -21.45000 -20.42342 -19.86134 -18.50103 -18.12537 -17.75372 -17.53637 -17.38234 -16.96433 -16.91030 -16.41354 -16.01654 -15.81226 -15.10756 -14.79010 -14.65281 -14.49722 -14.37545 -14.15328 -14.05412 -13.98245 -13.91284 -13.63974 -13.35169 -13.21975 -13.20161 -13.00272 -12.91428 -12.73897 -12.60453 -12.55994 -12.15323 -11.76112 -11.48752 -11.17305 -10.96248 -10.74636 -10.35217 -10.20372 -9.86681 -9.51679 -8.70932 -8.37795 -6.16574 -0.02661 1.22723 1.30874 1.39923 1.42496 1.52538 1.55968 1.58287 1.94901 2.09135 2.23929 2.32882 2.95914 3.28546 3.43824 3.71553 3.80258 3.94238 4.02237 4.05945 4.10278 4.18579 4.30702 4.34536 4.40340 4.44565 4.57665 4.64445 4.69710 4.76890 4.80526 4.84965 4.95865 4.99484 5.02763 5.08486 5.19666 5.35166 5.37921 5.49452 5.55665 5.82302 6.11986 6.16544 6.46398 6.83093 7.03002 7.22096 8.71689 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008920 B = 0.003582 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.139634 B = 7814.738010 C =10209.343127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.210 4.210 3 C 0.003 3.997 4 O -0.156 6.156 5 C -0.102 4.102 6 C 0.598 3.402 7 O -0.553 6.553 8 N -0.602 5.602 9 C 0.074 3.926 10 C 0.113 3.887 11 C 0.120 3.880 12 H 0.076 0.924 13 C -0.156 4.156 14 N -0.713 5.713 15 C 0.534 3.466 16 O -0.560 6.560 17 C -0.130 4.130 18 S -0.136 6.136 19 C -0.552 4.552 20 H 0.077 0.923 21 C 0.017 3.983 22 N -0.909 5.909 23 Si 0.998 3.002 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.261 1.261 27 C -0.129 4.129 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.252 0.748 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.141 0.859 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.410 0.590 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.273 0.727 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 13.905 25.506 29.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.211 4.211 3 C -0.067 4.067 4 O -0.052 6.052 5 C -0.154 4.154 6 C 0.388 3.612 7 O -0.435 6.435 8 N -0.332 5.332 9 C -0.068 4.068 10 C -0.010 4.010 11 C 0.014 3.986 12 H 0.094 0.906 13 C -0.214 4.214 14 N -0.371 5.371 15 C 0.319 3.681 16 O -0.439 6.439 17 C -0.282 4.282 18 S 0.091 5.909 19 C -0.700 4.700 20 H 0.095 0.905 21 C -0.188 4.188 22 N -0.545 5.545 23 Si 0.820 3.180 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.185 1.185 27 C -0.150 4.150 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.268 0.732 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.158 0.842 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.251 0.749 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.082 0.918 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.162 14.322 24.266 28.177 hybrid contribution -2.154 -1.531 0.188 2.649 sum -2.316 12.791 24.454 27.694 Atomic orbital electron populations 1.20255 0.86999 1.03930 1.02823 1.20836 0.99066 0.91958 1.09214 1.25138 0.79292 1.01562 1.00682 1.84242 1.29872 1.20490 1.70548 1.21730 0.95644 0.81573 1.16406 1.16878 0.82075 0.86071 0.76189 1.90727 1.86019 1.13768 1.52939 1.47807 1.05102 1.10715 1.69603 1.22138 1.04095 0.77690 1.02880 1.22104 0.86885 0.96949 0.95011 1.21632 0.86734 0.95212 0.94981 0.90603 1.22079 0.97576 0.99994 1.01783 1.46343 1.28559 1.56820 1.05383 1.19945 0.85715 0.79320 0.83090 1.90648 1.42360 1.48749 1.62119 1.23354 1.00146 1.03538 1.01127 1.85379 1.35485 1.73171 0.96840 1.23192 1.10535 1.40562 0.95686 0.90524 1.26106 1.01132 0.96586 0.94951 1.70169 1.38547 1.44733 1.01091 0.84962 0.76938 0.78122 0.78013 1.19064 1.19803 1.18520 1.22096 0.91344 1.01272 1.00304 0.91217 0.91418 0.89079 0.73198 0.89821 0.88725 0.91474 0.84150 0.88845 0.88170 0.91403 0.94587 0.74899 0.88287 0.88928 0.91822 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.39 71.24 0.74 -0.28 16 2 C -0.21 -3.65 6.14 -20.06 -0.12 -3.78 16 3 C 0.00 0.03 12.00 67.10 0.81 0.84 16 4 O -0.16 -2.85 7.52 -5.11 -0.04 -2.89 16 5 C -0.10 -2.41 6.70 24.07 0.16 -2.25 16 6 C 0.60 15.18 7.05 86.44 0.61 15.79 16 7 O -0.55 -16.62 13.91 -4.34 -0.06 -16.68 16 8 N -0.60 -11.71 2.77 -851.53 -2.36 -14.07 16 9 C 0.07 1.04 9.34 127.77 1.19 2.23 16 10 C 0.11 1.82 5.11 86.38 0.44 2.26 16 11 C 0.12 2.84 2.88 44.99 0.13 2.97 16 12 H 0.08 2.03 7.58 -2.39 -0.02 2.01 16 13 C -0.16 -3.25 9.48 71.98 0.68 -2.57 16 14 N -0.71 -22.73 4.48 -442.53 -1.98 -24.72 16 15 C 0.53 22.45 7.81 87.66 0.68 23.14 16 16 O -0.56 -27.37 15.52 -3.01 -0.05 -27.42 16 17 C -0.13 -6.00 6.16 71.24 0.44 -5.56 16 18 S -0.14 -7.99 20.57 -56.49 -1.16 -9.16 16 19 C -0.55 -33.27 9.50 67.95 0.65 -32.63 16 20 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 21 C 0.02 1.02 5.49 84.86 0.47 1.48 16 22 N -0.91 -57.05 13.22 21.65 0.29 -56.76 16 23 Si 1.00 45.06 29.55 68.60 2.03 47.08 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 27 C -0.13 -3.02 10.58 22.39 0.24 -2.78 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.25 0.91 8.06 -2.91 -0.02 0.88 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.05 8.04 -2.38 -0.02 1.03 16 34 H 0.07 1.16 5.93 -2.39 -0.01 1.14 16 35 H 0.14 1.10 8.07 -2.39 -0.02 1.09 16 36 H 0.09 1.57 7.50 -2.39 -0.02 1.55 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.41 12.89 5.59 -92.71 -0.52 12.37 16 41 H 0.10 4.29 8.14 -2.40 -0.02 4.27 16 42 H 0.09 4.09 8.14 -2.39 -0.02 4.08 16 43 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -84.23 385.73 4.27 -79.96 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.50 Total: 25.79 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 7.11 Total: -1.14 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -4.06 Total: -95.55 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -0.15 Total: -46.99 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.16 kcal Total: -84.23 4.27 -79.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572288867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.204 kcal (2) G-P(sol) polarization free energy of solvation -84.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds